Miyakogusa Predicted Gene
- Lj3g3v2341100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2341100.1 Non Chatacterized Hit- tr|I1MKV5|I1MKV5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,85.56,0,DEAD-like
helicases superfamily,Helicase, superfamily 1/2, ATP-binding domain;
helicase superfamily ,CUFF.43953.1
(1186 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 1521 0.0
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 1509 0.0
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 372 e-103
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 366 e-101
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 361 2e-99
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 360 2e-99
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 360 2e-99
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 290 4e-78
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 274 2e-73
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 274 2e-73
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 274 2e-73
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 273 4e-73
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 273 4e-73
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 257 4e-68
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 244 4e-64
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 240 4e-63
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 240 4e-63
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 239 9e-63
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 231 2e-60
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 230 4e-60
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 184 4e-46
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 183 7e-46
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 177 3e-44
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 175 2e-43
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 171 3e-42
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 170 5e-42
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 162 1e-39
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 159 8e-39
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 153 7e-37
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 120 4e-27
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 106 9e-23
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 103 8e-22
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 101 4e-21
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 101 4e-21
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 101 4e-21
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 94 8e-19
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 92 2e-18
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 91 5e-18
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 91 5e-18
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 91 7e-18
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 91 7e-18
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 90 8e-18
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 84 7e-16
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 83 1e-15
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 81 4e-15
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 80 8e-15
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 79 3e-14
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 76 1e-13
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 75 2e-13
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 70 6e-12
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 60 7e-09
AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family... 59 3e-08
AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family... 59 3e-08
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 57 1e-07
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 56 1e-07
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 55 2e-07
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 55 3e-07
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 55 4e-07
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 1521 bits (3938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 779/1196 (65%), Positives = 897/1196 (75%), Gaps = 38/1196 (3%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNV 60
MEFKGNYGPHLIIVPNAVLVNWKSEL+ WLPSVSCI+YVG KD RSKLFSQEV AMKFNV
Sbjct: 1024 MEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNV 1083
Query: 61 LVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQN 120
LVTTYEFIMYDRSKLSK+DWKYI+IDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQN
Sbjct: 1084 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1143
Query: 121 DXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQI 180
D P+VFDNRKAF+DWF++PFQKEGP N EDDWLETEKKVI+IHRLHQI
Sbjct: 1144 DLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQI 1203
Query: 181 LEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKN 240
LEPFMLRRRVEDVEGSLP KVSVVLRC+MS +QSA+YDW+KATGTLR+DPDDEKL+ QKN
Sbjct: 1204 LEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKN 1263
Query: 241 PAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFIVESCGKLWILDRILIKLQRT 300
P YQ K Y+TLNNRCMELRK CNHPLLNYP+FND SK+F+V SCGKLWILDRILIKLQRT
Sbjct: 1264 PIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRT 1323
Query: 301 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLS 360
GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN PD+DCFIFLLS
Sbjct: 1324 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLS 1383
Query: 361 IRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 420
IRAAGRGLNLQ+ADTVVIYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSHQ
Sbjct: 1384 IRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQ 1443
Query: 421 KEDELRSRGIVDSEDDLATKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQXXXXXX 480
KEDELRS G VD EDD+A KDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQ
Sbjct: 1444 KEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1503
Query: 481 XXXXXXXXXXXXXXCQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRFVH 540
QETVHDVPSL EVNRMIARSEEEVELFDQMD+E DW +EMT
Sbjct: 1504 RRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQ 1563
Query: 541 IPKWLRANTREVNAAIAALSKKPSKNTLLGGSIGMEAGELGSEXXXXXXXXXXXSYKELE 600
+PKWLRA+TREVNA +A LSKKPSKN L ++ ++ G G E +YKE+E
Sbjct: 1564 VPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKINYKEIE 1623
Query: 601 DEDLEYSEASSDERN--GYAHEEGEMGEFEDDRYIGADGDQPIDKNQLEDGLLCEAGYEF 658
D+ YSE SS+ERN EEG++ +F+DD GA GD +K + DG GY++
Sbjct: 1624 DDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEF-DGENPVCGYDY 1682
Query: 659 PQSLENAGNNQVVGKAGSSGSYSDSKKLKQIVSPSISSQKFGSLSALDARPSSISKMMTD 718
P + N AGSSGS +S + K++ SP +SSQKFGSLSALD RP S+SK + D
Sbjct: 1683 PPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASP-VSSQKFGSLSALDTRPGSVSKRLLD 1741
Query: 719 ELEDGEIFVSGDSLMDHQQSGSWIHDRDEGEDEQVLQQPRIKRKRSLRVRPRHMTERPEE 778
+LE+GEI SGDS +D Q+SGSW HDRDEG++EQVL QP IKRKRS+R+RPR ER +
Sbjct: 1742 DLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVL-QPTIKRKRSIRLRPRQTAERVD- 1799
Query: 779 KSGSEVTPHLEVQTVHKNQVQLRTDLESKPLVDSSARRNDQSTSSMKNKRTLPSRRIANT 838
GSE+ +Q + +LRT +VDS + R + S R++P++++A+T
Sbjct: 1800 --GSEMPAAQPLQVDRSYRSKLRT------VVDSHSSRQ-DQSDSSSRLRSVPAKKVAST 1850
Query: 839 SKLH-DSPKSARLNCISAPSDEAGEHSRESWEGKTNNSSGSSAHGTKMTEIIQRRCKNVI 897
SKLH SPKS RLN ++ E SRE+W+G + SS ++ G +M+ IIQ+RCK VI
Sbjct: 1851 SKLHVSSPKSGRLNATQLTVEDNAEASRETWDGTSPISSSNA--GARMSHIIQKRCKIVI 1908
Query: 898 SKIQRRIDKEGHQIVPLLTDLWKRIENSGYAGGSGNNLLDFRKIDQRIDRLEYNGVTELV 957
SK+QRRIDKEG QIVP+LT+LWKRI+N GYA G NNLL+ R+ID R++RLEY GV EL
Sbjct: 1909 SKLQRRIDKEGQQIVPMLTNLWKRIQN-GYAAGGVNNLLELREIDHRVERLEYAGVMELA 1967
Query: 958 LDVQFMLKSAMHFYGFSYEVRSEARKVHDLFFDILKIVFPDTDFREARSALSFSGQIPAT 1017
DVQ ML+ AM FYGFS+EVRSEA+KVH+LFFD+LK+ FPDTDFREAR+ALSFSG P
Sbjct: 1968 SDVQLMLRGAMQFYGFSHEVRSEAKKVHNLFFDLLKMSFPDTDFREARNALSFSGSAPTL 2027
Query: 1018 VTSPRPMAVG--QSKTHRPINDAETDSHPSQRSLQRGSASSGESNRIKGPQKQSRTRSGC 1075
V++P P G Q K + +N+ ET+ QRS QR E++RI+ Q T+ G
Sbjct: 2028 VSTPTPRGAGISQGKRQKLVNEPETEPSSPQRSQQR------ENSRIRVQIPQKETKLGG 2081
Query: 1076 AGSSREQLQQDDSP-LAHPGELVVCKKKRNDREKSLVKPRTGPVXXXXXXXXXXXXXXXX 1134
S D+SP LAHPGELV+CKKKR DREKS K RTG
Sbjct: 2082 TTS-----HTDESPILAHPGELVICKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLR 2136
Query: 1135 XXKDARLTQQT--AHAQGWAGQASQPNGSGGP---VGWANPVKRLRTDSGKRRPSH 1185
+ ++T A Q W Q + PN SG VGWANPVKRLRTDSGKRRPSH
Sbjct: 2137 SPVSGGVPRETRLAQQQRWPNQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSH 2192
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 1509 bits (3907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1196 (64%), Positives = 894/1196 (74%), Gaps = 39/1196 (3%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNV 60
MEFKGNYGPHLIIVPNAVLVNWKSEL+ WLPSVSCI+YVG KD RSKLFSQ V KFNV
Sbjct: 1024 MEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQ-VKFEKFNV 1082
Query: 61 LVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQN 120
LVTTYEFIMYDRSKLSK+DWKYI+IDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQN
Sbjct: 1083 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1142
Query: 121 DXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQI 180
D P+VFDNRKAF+DWF++PFQKEGP N EDDWLETEKKVI+IHRLHQI
Sbjct: 1143 DLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQI 1202
Query: 181 LEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKN 240
LEPFMLRRRVEDVEGSLP KVSVVLRC+MS +QSA+YDW+KATGTLR+DPDDEKL+ QKN
Sbjct: 1203 LEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKN 1262
Query: 241 PAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFIVESCGKLWILDRILIKLQRT 300
P YQ K Y+TLNNRCMELRK CNHPLLNYP+FND SK+F+V SCGKLWILDRILIKLQRT
Sbjct: 1263 PIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRT 1322
Query: 301 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLS 360
GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN PD+DCFIFLLS
Sbjct: 1323 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLS 1382
Query: 361 IRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 420
IRAAGRGLNLQ+ADTVVIYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSHQ
Sbjct: 1383 IRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQ 1442
Query: 421 KEDELRSRGIVDSEDDLATKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQXXXXXX 480
KEDELRS G VD EDD+A KDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQ
Sbjct: 1443 KEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1502
Query: 481 XXXXXXXXXXXXXXCQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRFVH 540
QETVHDVPSL EVNRMIARSEEEVELFDQMD+E DW +EMT
Sbjct: 1503 RRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQ 1562
Query: 541 IPKWLRANTREVNAAIAALSKKPSKNTLLGGSIGMEAGELGSEXXXXXXXXXXXSYKELE 600
+PKWLRA+TREVNA +A LSKKPSKN L ++ ++ G G E +YKE+E
Sbjct: 1563 VPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKINYKEIE 1622
Query: 601 DEDLEYSEASSDERN--GYAHEEGEMGEFEDDRYIGADGDQPIDKNQLEDGLLCEAGYEF 658
D+ YSE SS+ERN EEG++ +F+DD GA GD +K + DG GY++
Sbjct: 1623 DDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEF-DGENPVCGYDY 1681
Query: 659 PQSLENAGNNQVVGKAGSSGSYSDSKKLKQIVSPSISSQKFGSLSALDARPSSISKMMTD 718
P + N AGSSGS +S + K++ SP +SSQKFGSLSALD RP S+SK + D
Sbjct: 1682 PPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASP-VSSQKFGSLSALDTRPGSVSKRLLD 1740
Query: 719 ELEDGEIFVSGDSLMDHQQSGSWIHDRDEGEDEQVLQQPRIKRKRSLRVRPRHMTERPEE 778
+LE+GEI SGDS +D Q+SGSW HDRDEG++EQVL QP IKRKRS+R+RPR ER +
Sbjct: 1741 DLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVL-QPTIKRKRSIRLRPRQTAERVD- 1798
Query: 779 KSGSEVTPHLEVQTVHKNQVQLRTDLESKPLVDSSARRNDQSTSSMKNKRTLPSRRIANT 838
GSE+ +Q + +LRT +VDS + R + S R++P++++A+T
Sbjct: 1799 --GSEMPAAQPLQVDRSYRSKLRT------VVDSHSSRQ-DQSDSSSRLRSVPAKKVAST 1849
Query: 839 SKLH-DSPKSARLNCISAPSDEAGEHSRESWEGKTNNSSGSSAHGTKMTEIIQRRCKNVI 897
SKLH SPKS RLN ++ E SRE+W+G + SS ++ G +M+ IIQ+RCK VI
Sbjct: 1850 SKLHVSSPKSGRLNATQLTVEDNAEASRETWDGTSPISSSNA--GARMSHIIQKRCKIVI 1907
Query: 898 SKIQRRIDKEGHQIVPLLTDLWKRIENSGYAGGSGNNLLDFRKIDQRIDRLEYNGVTELV 957
SK+QRRIDKEG QIVP+LT+LWKRI+N GYA G NNLL+ R+ID R++RLEY GV EL
Sbjct: 1908 SKLQRRIDKEGQQIVPMLTNLWKRIQN-GYAAGGVNNLLELREIDHRVERLEYAGVMELA 1966
Query: 958 LDVQFMLKSAMHFYGFSYEVRSEARKVHDLFFDILKIVFPDTDFREARSALSFSGQIPAT 1017
DVQ ML+ AM FYGFS+EVRSEA+KVH+LFFD+LK+ FPDTDFREAR+ALSFSG P
Sbjct: 1967 SDVQLMLRGAMQFYGFSHEVRSEAKKVHNLFFDLLKMSFPDTDFREARNALSFSGSAPTL 2026
Query: 1018 VTSPRPMAVG--QSKTHRPINDAETDSHPSQRSLQRGSASSGESNRIKGPQKQSRTRSGC 1075
V++P P G Q K + +N+ ET+ QRS QR E++RI+ Q T+ G
Sbjct: 2027 VSTPTPRGAGISQGKRQKLVNEPETEPSSPQRSQQR------ENSRIRVQIPQKETKLGG 2080
Query: 1076 AGSSREQLQQDDSP-LAHPGELVVCKKKRNDREKSLVKPRTGPVXXXXXXXXXXXXXXXX 1134
S D+SP LAHPGELV+CKKKR DREKS K RTG
Sbjct: 2081 TTS-----HTDESPILAHPGELVICKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLR 2135
Query: 1135 XXKDARLTQQT--AHAQGWAGQASQPNGSGGP---VGWANPVKRLRTDSGKRRPSH 1185
+ ++T A Q W Q + PN SG VGWANPVKRLRTDSGKRRPSH
Sbjct: 2136 SPVSGGVPRETRLAQQQRWPNQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSH 2191
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/530 (39%), Positives = 297/530 (56%), Gaps = 57/530 (10%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNV 60
+E K +GPHLI+ P AVL NW++E W PS+S Y G K+ R+++ ++ ++ KFNV
Sbjct: 429 LESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRAR-IAGGKFNV 487
Query: 61 LVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDR-YRCQRRLLLTGTPLQ 119
L+T Y+ IM D++ L KIDW Y+++DE R+K+ + LA+ L YR +RRLLLTGTP+Q
Sbjct: 488 LITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQ 547
Query: 120 NDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQ 179
N P +F++ F +WF+ PF + G L E++++II+RLH
Sbjct: 548 NSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSAS------LTDEEELLIINRLHH 601
Query: 180 ILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQK 239
++ PF+LRR+ +VE LP K V+L+C MS Q Y V G + L + K
Sbjct: 602 VIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGK----- 656
Query: 240 NPAYQVKQYKTLNNRCMELRKTCNHPLLNYPF-FNDLSKEFIVESCGKLWILDRILIKLQ 298
K+L N M+LRK CNHP L +N K IV + GK +LDR+L KL+
Sbjct: 657 --------SKSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFELLDRLLPKLK 708
Query: 299 RTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFL 358
+ GHR+LLFS MT+L+D+LE YL +Y R+DG+T + R + FN PDS F+FL
Sbjct: 709 KAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFL 768
Query: 359 LSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 418
LS RA G GLNLQ+ADT++I+D D NP+ ++QA RAHRIGQK+EV+V + +
Sbjct: 769 LSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVS------- 821
Query: 419 HQKEDELRSRGIVDSEDDLATKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQXXXX 478
IGSIE +I +Q K+ + +VI AG F+
Sbjct: 822 -------------------------IGSIEEVILERAKQ-KMGIDAKVIQAGLFN--TTS 853
Query: 479 XXXXXXXXXXXXXXXXCQETVHDVPSLQEVNRMIARSEEEVELFDQMDDE 528
DVPS +E+NR+ AR+EEE +F+QMD+E
Sbjct: 854 TAQDRREMLEEIMSKGTSSLGEDVPSEREINRLAARTEEEFWMFEQMDEE 903
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/533 (39%), Positives = 293/533 (54%), Gaps = 62/533 (11%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNV 60
+E KG GP+LI+ P AVL NW +E W+PS++ Y G + R + + KFNV
Sbjct: 446 LENKGVPGPYLIVAPKAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIREKIAGEGKFNV 505
Query: 61 LVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDL-DRYRCQRRLLLTGTPLQ 119
L+T Y+ IM D++ L KI+W Y+++DE R+K+ +S LA+ L YR +RRLLLTGTP+Q
Sbjct: 506 LITHYDLIMRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQ 565
Query: 120 NDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQ 179
N P +F++ + F +WF+ PF G L E++++IIHRLH
Sbjct: 566 NSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVS------LTDEEELLIIHRLHH 619
Query: 180 ILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQK 239
++ PF+LRR+ ++VE LP K V+L+C MS Q Y V G + L K
Sbjct: 620 VIRPFILRRKKDEVEKFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGK----- 674
Query: 240 NPAYQVKQYKTLNNRCMELRKTCNHPLLNYPF----FNDLSKEFIVESCGKLWILDRILI 295
K+L N M+LRK CNHP Y F +N K IV + GK +LDR+L
Sbjct: 675 --------SKSLQNLTMQLRKCCNHP---YLFVGGDYNMWKKPEIVRASGKFELLDRLLP 723
Query: 296 KLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCF 355
KL++ GHR+LLFS MT+L+D+LE YL Y R+DGTT + R + FN PDS F
Sbjct: 724 KLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYF 783
Query: 356 IFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 415
+FLLS RA G GLNLQ+ADTV+I+D D NP+ ++QA RAHRIGQK+EV+V + +V
Sbjct: 784 MFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSV--- 840
Query: 416 ISSHQKEDELRSRGIVDSEDDLATKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQX 475
GS+E +I +Q K+ + +VI AG F+
Sbjct: 841 -----------------------------GSVEEVILERAKQ-KMGIDAKVIQAGLFNTT 870
Query: 476 XXXXXXXXXXXXXXXXXXXCQETVHDVPSLQEVNRMIARSEEEVELFDQMDDE 528
T DVPS +E+NR+ ARSE+E +F++MD+E
Sbjct: 871 STAQDRREMLEEIMRKGTSSLGT--DVPSEREINRLAARSEDEFWMFERMDEE 921
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 361 bits (926), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 307/564 (54%), Gaps = 76/564 (13%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNV 60
ME K + GP L++VP++VL W+SE+ W PS+ I Y G D R KLF +++ KFNV
Sbjct: 797 METKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNV 856
Query: 61 LVTTYEFIM--YDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPL 118
L+TTYE++M +DR KLSKI W YI+IDE R+K+ L DL Y RLLLTGTPL
Sbjct: 857 LLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPL 916
Query: 119 QNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLH 178
QN+ P +F++ + F+ WF+KPFQ G +AE+ L E+ ++II+RLH
Sbjct: 917 QNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNG-ESSAEEALLSEEENLLIINRLH 975
Query: 179 QILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQ 238
Q+L PF+LRR VE LP K+ ++RC+ S Q + V ++ L
Sbjct: 976 QVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRV-----------EDNLGSI 1024
Query: 239 KNPAYQVKQYKTLNNRCMELRKTCNHPLLNY----PFFNDLSKEF---IVESCGKLWILD 291
N + + ++N MELR CNHP L+ N + K F IV CGKL +LD
Sbjct: 1025 GN-----AKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLD 1079
Query: 292 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPD 351
R+L KL+ T HRVL FSTMT+LLD++E+YL + Y R+DG TS DR + I FN
Sbjct: 1080 RMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSG 1139
Query: 352 SDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 411
S FIFLLSIRA G G+NLQ+ADTV+++D D NP+ + QA ARAHRIGQK++V V+ E
Sbjct: 1140 SPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFET 1199
Query: 412 VVDKISSHQKEDELRSRGIVDSEDDLATKDRYIGSIESLIRNNIQQYKIDMADEVINAGR 471
V S+E +R + ++K+ +A++ I AG
Sbjct: 1200 V--------------------------------NSVEEQVRASA-EHKLGVANQSITAGF 1226
Query: 472 FDQXXXXXXXXXXXXXXXXXXXXCQETVHDVPSLQE--VNRMIARSEEEVELFDQMD--- 526
FD + D P L + +N +IAR E E+++F+ +D
Sbjct: 1227 FDNNTSAEDRKEYLESLLRESKKEE----DAPVLDDDALNDLIARRESEIDIFESIDKQR 1282
Query: 527 --DELDWIDEMTR------FVHIP 542
+E++ + + F HIP
Sbjct: 1283 KENEMETWNTLVHGPGSDSFAHIP 1306
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 360 bits (925), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 307/564 (54%), Gaps = 76/564 (13%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNV 60
ME K + GP L++VP++VL W+SE+ W PS+ I Y G D R KLF +++ KFNV
Sbjct: 797 METKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNV 856
Query: 61 LVTTYEFIM--YDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPL 118
L+TTYE++M +DR KLSKI W YI+IDE R+K+ L DL Y RLLLTGTPL
Sbjct: 857 LLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPL 916
Query: 119 QNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLH 178
QN+ P +F++ + F+ WF+KPFQ G +AE+ L E+ ++II+RLH
Sbjct: 917 QNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNG-ESSAEEALLSEEENLLIINRLH 975
Query: 179 QILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQ 238
Q+L PF+LRR VE LP K+ ++RC+ S Q + V ++ L
Sbjct: 976 QVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRV-----------EDNLGSI 1024
Query: 239 KNPAYQVKQYKTLNNRCMELRKTCNHPLLNY----PFFNDLSKEF---IVESCGKLWILD 291
N + + ++N MELR CNHP L+ N + K F IV CGKL +LD
Sbjct: 1025 GN-----AKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLD 1079
Query: 292 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPD 351
R+L KL+ T HRVL FSTMT+LLD++E+YL + Y R+DG TS DR + I FN
Sbjct: 1080 RMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSG 1139
Query: 352 SDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 411
S FIFLLSIRA G G+NLQ+ADTV+++D D NP+ + QA ARAHRIGQK++V V+ E
Sbjct: 1140 SPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFET 1199
Query: 412 VVDKISSHQKEDELRSRGIVDSEDDLATKDRYIGSIESLIRNNIQQYKIDMADEVINAGR 471
V S+E +R + ++K+ +A++ I AG
Sbjct: 1200 V--------------------------------NSVEEQVRASA-EHKLGVANQSITAGF 1226
Query: 472 FDQXXXXXXXXXXXXXXXXXXXXCQETVHDVPSLQE--VNRMIARSEEEVELFDQMD--- 526
FD + D P L + +N +IAR E E+++F+ +D
Sbjct: 1227 FDNNTSAEDRKEYLESLLRESKKEE----DAPVLDDDALNDLIARRESEIDIFESIDKQR 1282
Query: 527 --DELDWIDEMTR------FVHIP 542
+E++ + + F HIP
Sbjct: 1283 KENEMETWNTLVHGPGSDSFAHIP 1306
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 360 bits (925), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 307/564 (54%), Gaps = 76/564 (13%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNV 60
ME K + GP L++VP++VL W+SE+ W PS+ I Y G D R KLF +++ KFNV
Sbjct: 797 METKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNV 856
Query: 61 LVTTYEFIM--YDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPL 118
L+TTYE++M +DR KLSKI W YI+IDE R+K+ L DL Y RLLLTGTPL
Sbjct: 857 LLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPL 916
Query: 119 QNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLH 178
QN+ P +F++ + F+ WF+KPFQ G +AE+ L E+ ++II+RLH
Sbjct: 917 QNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNG-ESSAEEALLSEEENLLIINRLH 975
Query: 179 QILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQ 238
Q+L PF+LRR VE LP K+ ++RC+ S Q + V ++ L
Sbjct: 976 QVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRV-----------EDNLGSI 1024
Query: 239 KNPAYQVKQYKTLNNRCMELRKTCNHPLLNY----PFFNDLSKEF---IVESCGKLWILD 291
N + + ++N MELR CNHP L+ N + K F IV CGKL +LD
Sbjct: 1025 GN-----AKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLD 1079
Query: 292 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPD 351
R+L KL+ T HRVL FSTMT+LLD++E+YL + Y R+DG TS DR + I FN
Sbjct: 1080 RMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSG 1139
Query: 352 SDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 411
S FIFLLSIRA G G+NLQ+ADTV+++D D NP+ + QA ARAHRIGQK++V V+ E
Sbjct: 1140 SPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFET 1199
Query: 412 VVDKISSHQKEDELRSRGIVDSEDDLATKDRYIGSIESLIRNNIQQYKIDMADEVINAGR 471
V S+E +R + ++K+ +A++ I AG
Sbjct: 1200 V--------------------------------NSVEEQVRASA-EHKLGVANQSITAGF 1226
Query: 472 FDQXXXXXXXXXXXXXXXXXXXXCQETVHDVPSLQE--VNRMIARSEEEVELFDQMD--- 526
FD + D P L + +N +IAR E E+++F+ +D
Sbjct: 1227 FDNNTSAEDRKEYLESLLRESKKEE----DAPVLDDDALNDLIARRESEIDIFESIDKQR 1282
Query: 527 --DELDWIDEMTR------FVHIP 542
+E++ + + F HIP
Sbjct: 1283 KENEMETWNTLVHGPGSDSFAHIP 1306
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 169/416 (40%), Positives = 238/416 (57%), Gaps = 44/416 (10%)
Query: 8 GPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEV-------SAMKFNV 60
GP L++VP + L NW E WLP ++ I YVG + R E +KFN
Sbjct: 675 GPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIKFNA 734
Query: 61 LVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQN 120
L+TTYE ++ D++ LSKI W Y+++DEA R+K+ ++ L L + + +LL+TGTPLQN
Sbjct: 735 LLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQN 794
Query: 121 DXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQI 180
P F N+ D F + ++ +E + LH
Sbjct: 795 SVEELWALLHFLDPGKFKNK----DEFVENYKNLSSFNESE------------LANLHLE 838
Query: 181 LEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKN 240
L P +LRR ++DVE SLPPK+ +LR +MSP+Q Y W+ L + D V+ N
Sbjct: 839 LRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWI-----LERNFHDLNKGVRGN 893
Query: 241 PAYQVKQYKTLNNRCMELRKTCNHPLL----NYPF---FNDLSK-EFIVESCGKLWILDR 292
+L N +EL+K CNHP L ++ + ND SK + I+ S GKL ILD+
Sbjct: 894 QV-------SLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDK 946
Query: 293 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDS 352
+L++L+ T HRVL+FS M ++LDIL EYL R ++R+DG+T E R+ A+ FN P S
Sbjct: 947 LLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPAS 1006
Query: 353 DCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 408
D F FLLS RA G G+NL +ADTVVI+D D NP+N+ QA++RAHRIGQ+ EV IY
Sbjct: 1007 DDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQ-EVVNIY 1061
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 274 bits (701), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/412 (36%), Positives = 238/412 (57%), Gaps = 38/412 (9%)
Query: 2 EFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVL 61
E++G GPH+++ P + L NW +E+ + P + + ++G + R + + A KF++
Sbjct: 233 EYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDIC 292
Query: 62 VTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQND 121
VT++E + +++ L + W+YI+IDEA R+K+ +S+L++ + + RLL+TGTPLQN+
Sbjct: 293 VTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNN 352
Query: 122 XXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQIL 181
PE+F + + F++WF Q G E ++ +LH++L
Sbjct: 353 LHELWALLNFLLPEIFSSAETFDEWF----QISGENDQQE-----------VVQQLHKVL 397
Query: 182 EPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNP 241
PF+LRR DVE LPPK +L+ MS +Q Y + ++ E+
Sbjct: 398 RPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGER------- 450
Query: 242 AYQVKQYKTLNNRCMELRKTCNHPLL------NYPFFNDLSKEFIVESCGKLWILDRILI 295
K L N M+LRK CNHP L P+ + + ++ + GK+ +LD++L
Sbjct: 451 -------KRLLNIAMQLRKCCNHPYLFQGAEPGPPY---TTGDHLITNAGKMVLLDKLLP 500
Query: 296 KLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCF 355
KL+ RVL+FS MT+LLDILE+YL +R +Y RIDG T ++R+++I +N P S+ F
Sbjct: 501 KLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKF 560
Query: 356 IFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVI 407
+FLLS RA G G+NL +AD V++YD D NP+ + QA RAHRIGQK+EV+V
Sbjct: 561 VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 612
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 274 bits (701), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/412 (36%), Positives = 238/412 (57%), Gaps = 38/412 (9%)
Query: 2 EFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVL 61
E++G GPH+++ P + L NW +E+ + P + + ++G + R + + A KF++
Sbjct: 233 EYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDIC 292
Query: 62 VTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQND 121
VT++E + +++ L + W+YI+IDEA R+K+ +S+L++ + + RLL+TGTPLQN+
Sbjct: 293 VTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNN 352
Query: 122 XXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQIL 181
PE+F + + F++WF Q G E ++ +LH++L
Sbjct: 353 LHELWALLNFLLPEIFSSAETFDEWF----QISGENDQQE-----------VVQQLHKVL 397
Query: 182 EPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNP 241
PF+LRR DVE LPPK +L+ MS +Q Y + ++ E+
Sbjct: 398 RPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGER------- 450
Query: 242 AYQVKQYKTLNNRCMELRKTCNHPLL------NYPFFNDLSKEFIVESCGKLWILDRILI 295
K L N M+LRK CNHP L P+ + + ++ + GK+ +LD++L
Sbjct: 451 -------KRLLNIAMQLRKCCNHPYLFQGAEPGPPY---TTGDHLITNAGKMVLLDKLLP 500
Query: 296 KLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCF 355
KL+ RVL+FS MT+LLDILE+YL +R +Y RIDG T ++R+++I +N P S+ F
Sbjct: 501 KLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKF 560
Query: 356 IFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVI 407
+FLLS RA G G+NL +AD V++YD D NP+ + QA RAHRIGQK+EV+V
Sbjct: 561 VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 612
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 274 bits (701), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/412 (36%), Positives = 238/412 (57%), Gaps = 38/412 (9%)
Query: 2 EFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVL 61
E++G GPH+++ P + L NW +E+ + P + + ++G + R + + A KF++
Sbjct: 233 EYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDIC 292
Query: 62 VTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQND 121
VT++E + +++ L + W+YI+IDEA R+K+ +S+L++ + + RLL+TGTPLQN+
Sbjct: 293 VTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNN 352
Query: 122 XXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQIL 181
PE+F + + F++WF Q G E ++ +LH++L
Sbjct: 353 LHELWALLNFLLPEIFSSAETFDEWF----QISGENDQQE-----------VVQQLHKVL 397
Query: 182 EPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNP 241
PF+LRR DVE LPPK +L+ MS +Q Y + ++ E+
Sbjct: 398 RPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGER------- 450
Query: 242 AYQVKQYKTLNNRCMELRKTCNHPLL------NYPFFNDLSKEFIVESCGKLWILDRILI 295
K L N M+LRK CNHP L P+ + + ++ + GK+ +LD++L
Sbjct: 451 -------KRLLNIAMQLRKCCNHPYLFQGAEPGPPY---TTGDHLITNAGKMVLLDKLLP 500
Query: 296 KLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCF 355
KL+ RVL+FS MT+LLDILE+YL +R +Y RIDG T ++R+++I +N P S+ F
Sbjct: 501 KLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKF 560
Query: 356 IFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVI 407
+FLLS RA G G+NL +AD V++YD D NP+ + QA RAHRIGQK+EV+V
Sbjct: 561 VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 612
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 273 bits (699), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 239/409 (58%), Gaps = 32/409 (7%)
Query: 2 EFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVL 61
E++G GPH+++ P + L NW +E+ + P + + ++G + R + + + A KF++
Sbjct: 238 EYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDIC 297
Query: 62 VTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQND 121
VT++E + +++ L + W+YI+IDEA R+K+ +S+L++ + + RLL+TGTPLQN+
Sbjct: 298 VTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNN 357
Query: 122 XXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQIL 181
PEVF + + F++WF + E+D E ++ +LH++L
Sbjct: 358 LHELWALLNFLLPEVFSSAETFDEWFQI---------SGENDQQE------VVQQLHKVL 402
Query: 182 EPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNP 241
PF+LRR DVE LPPK +L+ MS +Q Y + ++ E+
Sbjct: 403 RPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGER------- 455
Query: 242 AYQVKQYKTLNNRCMELRKTCNHPLL---NYPFFNDLSKEFIVESCGKLWILDRILIKLQ 298
K L N M+LRK CNHP L P + + +V + GK+ +LD++L KL+
Sbjct: 456 -------KRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLK 508
Query: 299 RTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFL 358
RVL+FS MT+LLDILE+YL +R Y RIDG T ++R+++I +N P S+ F+FL
Sbjct: 509 DRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 568
Query: 359 LSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVI 407
LS RA G G+NL +AD V++YD D NP+ + QA RAHRIGQK+EV+V
Sbjct: 569 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 617
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 273 bits (699), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 239/409 (58%), Gaps = 32/409 (7%)
Query: 2 EFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVL 61
E++G GPH+++ P + L NW +E+ + P + + ++G + R + + + A KF++
Sbjct: 238 EYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDIC 297
Query: 62 VTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQND 121
VT++E + +++ L + W+YI+IDEA R+K+ +S+L++ + + RLL+TGTPLQN+
Sbjct: 298 VTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNN 357
Query: 122 XXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQIL 181
PEVF + + F++WF + E+D E ++ +LH++L
Sbjct: 358 LHELWALLNFLLPEVFSSAETFDEWFQI---------SGENDQQE------VVQQLHKVL 402
Query: 182 EPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNP 241
PF+LRR DVE LPPK +L+ MS +Q Y + ++ E+
Sbjct: 403 RPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGER------- 455
Query: 242 AYQVKQYKTLNNRCMELRKTCNHPLL---NYPFFNDLSKEFIVESCGKLWILDRILIKLQ 298
K L N M+LRK CNHP L P + + +V + GK+ +LD++L KL+
Sbjct: 456 -------KRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLK 508
Query: 299 RTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFL 358
RVL+FS MT+LLDILE+YL +R Y RIDG T ++R+++I +N P S+ F+FL
Sbjct: 509 DRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 568
Query: 359 LSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVI 407
LS RA G G+NL +AD V++YD D NP+ + QA RAHRIGQK+EV+V
Sbjct: 569 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 617
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 257 bits (656), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/432 (35%), Positives = 228/432 (52%), Gaps = 59/432 (13%)
Query: 3 FKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKL-------------- 48
F+ N PHL+I P + L NW+ E W P ++ + Y G R+ +
Sbjct: 316 FEENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKI 375
Query: 49 ---FSQEVSA------MKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLA 99
S ++S+ +KF+VL+T+YE I D + L I W+ +++DE R+K++DS L
Sbjct: 376 KKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLF 435
Query: 100 RDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQN 159
L +Y R+LLTGTPLQN+ F + + F + F Q+E
Sbjct: 436 SSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ---- 491
Query: 160 AEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDW 219
I RLH++L P +LRR +DV +PPK ++LR +S +Q Y
Sbjct: 492 --------------ISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYY-- 535
Query: 220 VKATGTLRLDPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL---NYPFFNDLS 276
KA T + K Q+ +LNN MELRK C HP + P +D +
Sbjct: 536 -KAIFTRNYQV------LTKKGGAQI----SLNNIMMELRKVCCHPYMLEGVEPVIHDAN 584
Query: 277 KEF--IVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGT 334
+ F ++ESCGKL +LD++++KL+ GHRVL+++ +LD+LE+Y ++ Y RIDG
Sbjct: 585 EAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGK 644
Query: 335 TSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVAR 394
+R+ I FN +S+ F FLLS RA G G+NL +ADTV+IYD D NP + QA+AR
Sbjct: 645 VGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMAR 704
Query: 395 AHRIGQKREVKV 406
AHR+GQ +V +
Sbjct: 705 AHRLGQTNKVMI 716
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 244 bits (622), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/419 (36%), Positives = 230/419 (54%), Gaps = 32/419 (7%)
Query: 3 FKGNY--GPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAM---K 57
KGN GP+L+I P + L NW +E+ + PS++ I Y G K+ R +L + + K
Sbjct: 244 LKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPK 303
Query: 58 FNVLVTTYEFIMYDRSK-LSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGT 116
F +++T+YE M D + L WKY+VIDE R+K+ L R+L + +LLLTGT
Sbjct: 304 FPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGT 363
Query: 117 PLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHR 176
PLQN+ P++F + F WF F ++ + +++ E +++ ++ +
Sbjct: 364 PLQNNLSELWSLLNFILPDIFTSHDEFESWFD--FSEKNKNEATKEE--EEKRRAQVVSK 419
Query: 177 LHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLK 236
LH IL PF+LRR DVE SLP K +++ M+ Q + + TL + ++
Sbjct: 420 LHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHL-VNNTLEAHLGENAIR 478
Query: 237 VQKNPAYQVKQYKTLNNRCMELRKTCNHP-LLN--------YPFFNDLSKEFIVESCGKL 287
Q ++ K LNN ++LRK CNHP LL YP E IV CGK
Sbjct: 479 GQ---GWKGK----LNNLVIQLRKNCNHPDLLQGQIDGSYLYP-----PVEEIVGQCGKF 526
Query: 288 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDF 347
+L+R+L++L H+VL+FS TKLLDI++ Y + RIDG+ L++R I DF
Sbjct: 527 RLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDF 586
Query: 348 NHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKV 406
+ S C IFLLS RA G G+NL +ADT ++YD D NP+ + QA+ R HRIGQ + V V
Sbjct: 587 SDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 645
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 240 bits (613), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 167/508 (32%), Positives = 254/508 (50%), Gaps = 86/508 (16%)
Query: 3 FKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVS-----AMK 57
F+ N PHL++ P + + NW+ E W P ++ + Y G + R ++ E K
Sbjct: 268 FEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSK 327
Query: 58 FNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTP 117
F+VL+TTYE + S LS I W ++IDE R+K++ S L L ++ + +LLTGTP
Sbjct: 328 FDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTP 387
Query: 118 LQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRL 177
LQN+ + F + + F D N E+ I RL
Sbjct: 388 LQNNLNELFALMHFLDADKFGSLEKFQDI------------NKEEQ----------ISRL 425
Query: 178 HQILEPFMLRRRVEDV-EGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLK 236
HQ+L P +LRR +DV + +PPK ++LR MS Q +Y V
Sbjct: 426 HQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNN------------ 473
Query: 237 VQKNPAYQV---KQYKTLNNRCMELRKTCNHPLL---NYPFFNDLSKEF--IVESCGKLW 288
YQV K+ ++N M+LR+ C+HP L P F D ++ F ++E+ GKL
Sbjct: 474 ------YQVLTKKRDAKISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQ 527
Query: 289 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN 348
+LD++++KL+ GHRVL+++ L +LE+Y ++ Y RIDG S +R+ I FN
Sbjct: 528 LLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFN 587
Query: 349 HPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 408
+S+ F FLLS RA G G+NL +ADTV+IYD D NP + QA+AR HR+GQ +V +IY
Sbjct: 588 AENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKV-MIY 646
Query: 409 ------------MEAVVDKI--------SSHQKEDELR------SRGIVDSEDDLATKDR 442
ME +K+ H +DEL S+ + E+D A +
Sbjct: 647 RLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQDELDDIIKYGSKELFSEENDEAGRSG 706
Query: 443 YI----GSIESLI-RNNIQQYKIDMADE 465
I +IE L+ RN++ ++ + DE
Sbjct: 707 KIHYDDAAIEQLLDRNHVDAVEVSLDDE 734
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 240 bits (613), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 254/465 (54%), Gaps = 44/465 (9%)
Query: 4 KGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGK----DHRSKLFSQEVSAMKFN 59
+G GP L++ P +V W SE+ + P++ + YVG K D R ++ + F+
Sbjct: 98 QGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHG-HFLPFD 156
Query: 60 VLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDL-DRYRCQRRLLLTGTPL 118
VL+TTY+ + D+ LS+I W+Y +IDEAQR+K+ +SVL L +++ RRLL+TGTP+
Sbjct: 157 VLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPI 216
Query: 119 QNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLH 178
QN+ P VF D F F++ G + +D ET K L
Sbjct: 217 QNNLTELWALMHFCMPLVFGTL----DQFLSAFKETGDGLDVSNDK-ETYKS------LK 265
Query: 179 QILEPFMLRRR----VEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEK 234
IL FMLRR +E LPP + + + +Q IY T LR ++
Sbjct: 266 FILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIY-----TSILR-----KE 315
Query: 235 LKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL-----NYPFFNDLSKEFIVESCGKLWI 289
L + + +L N ++LRK C+HP L PF E +V++ GKL +
Sbjct: 316 LPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEG---EHLVQASGKLLV 372
Query: 290 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNH 349
LD++L +L +GHRVLLFS MT LDIL+++++ RR Y R+DG+ E+R +AI +F+
Sbjct: 373 LDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSV 432
Query: 350 PDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 409
S+ F+F++S RA G GLNL +ADTV+ Y+ D NP+ ++QA+ RAHRIGQ V I +
Sbjct: 433 DGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINL 492
Query: 410 --EAVVDKISSHQKEDELR-SRGIVDSEDDLATKDRYIGSIESLI 451
E V+++ + E +L+ S +V D++ K+ G + SL+
Sbjct: 493 VTEHSVEEVILRRAERKLQLSHNVVG--DNMEEKEEDGGDLRSLV 535
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 239 bits (610), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 146/418 (34%), Positives = 219/418 (52%), Gaps = 54/418 (12%)
Query: 3 FKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVS-----AMK 57
F+ N PHL++ P + + NW+ E W P ++ + Y G + R ++ E K
Sbjct: 227 FEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSK 286
Query: 58 FNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTP 117
F+VL+TTYE + S LS I W ++IDE R+K++ S L L ++ + +LLTGTP
Sbjct: 287 FDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTP 346
Query: 118 LQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRL 177
LQN+ + F + + F D N E+ I RL
Sbjct: 347 LQNNLNELFALMHFLDADKFGSLEKFQDI------------NKEEQ----------ISRL 384
Query: 178 HQILEPFMLRRRVEDV-EGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLK 236
HQ+L P +LRR +DV + +PPK ++LR MS Q +Y V
Sbjct: 385 HQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNN------------ 432
Query: 237 VQKNPAYQV---KQYKTLNNRCMELRKTCNHPLL---NYPFFNDLSKEF--IVESCGKLW 288
YQV K+ ++N M+LR+ C+HP L P F D ++ F ++E+ GKL
Sbjct: 433 ------YQVLTKKRDAKISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQ 486
Query: 289 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN 348
+LD++++KL+ GHRVL+++ L +LE+Y ++ Y RIDG S +R+ I FN
Sbjct: 487 LLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFN 546
Query: 349 HPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKV 406
+S+ F FLLS RA G G+NL +ADTV+IYD D NP + QA+AR HR+GQ +V +
Sbjct: 547 AENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMI 604
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 230/432 (53%), Gaps = 58/432 (13%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKL------------ 48
EF G P L++VP + + NW SE W P ++ + Y G R+ +
Sbjct: 733 FEF-GVARPCLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTG 791
Query: 49 FSQEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQ 108
+++ ++ KFNVL+TTYE ++ D S L + W+ +V+DE R+K+ +S L L+ + Q
Sbjct: 792 TTKKPTSYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQ 851
Query: 109 RRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETE 168
R+LLTGTPLQN+ P F + +F + F D E
Sbjct: 852 HRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEERF--------------HDLTSAE 897
Query: 169 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRL 228
K + L +++ P MLRR +D ++PPK ++ +++ +Q+ Y +A T
Sbjct: 898 K----VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYY---RAMLT--- 947
Query: 229 DPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL---------NYPFFNDLSKEF 279
+ ++ +N V Q L N M+LRK CNHP L + F +D+
Sbjct: 948 ----KNYQILRNIGKGVAQQSML-NIVMQLRKVCNHPYLIPGTEPESGSLEFLHDMR--- 999
Query: 280 IVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL--QWRRLVYRRIDGTTSL 337
+++ KL +L +L L + GHRVL+FS MTKLLDILE+YL ++ + R+DG+ ++
Sbjct: 1000 -IKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAV 1058
Query: 338 EDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHR 397
DR++AI FN D + F+FLLS RA G G+NL +ADTV+IYD D NP + QA+ RAHR
Sbjct: 1059 ADRQAAIARFNQ-DKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHR 1117
Query: 398 IGQKREVKVIYM 409
IGQ + + V +
Sbjct: 1118 IGQSKRLLVYRL 1129
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 230 bits (587), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 164/480 (34%), Positives = 256/480 (53%), Gaps = 55/480 (11%)
Query: 4 KGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGK----DHRSKLF-----SQEVS 54
+G GP L++ P +V W SE+ + P++ + YVG K D R ++ S +
Sbjct: 98 QGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGH 157
Query: 55 AMKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDL-DRYRCQRRLLL 113
+ F+VL+TTY+ + D+ LS+I W+Y +IDEAQR+K+ +SVL L +++ RRLL+
Sbjct: 158 FLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLI 217
Query: 114 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVII 173
TGTP+QN+ P VF D F F++ G + D + +K+
Sbjct: 218 TGTPIQNNLTELWALMHFCMPLVFGTL----DQFLSAFKETGDGLSGLD--VSNDKETY- 270
Query: 174 IHRLHQILEPFMLRRR----VEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLD 229
L IL FMLRR +E LPP + + + +Q IY T LR
Sbjct: 271 -KSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIY-----TSILR-- 322
Query: 230 PDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL-----NYPFFNDLSKEFIVESC 284
++L + + +L N ++LRK C+HP L PF E +V++
Sbjct: 323 ---KELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEG---EHLVQAS 376
Query: 285 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAI 344
GKL +LD++L +L +GHRVLLFS MT LDIL+++++ RR Y R+DG+ E+R +AI
Sbjct: 377 GKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAI 436
Query: 345 VDFNHPD----------SDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVAR 394
+F+ S+ F+F++S RA G GLNL +ADTV+ Y+ D NP+ ++QA+ R
Sbjct: 437 KNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQR 496
Query: 395 AHRIGQKREVKVIYM--EAVVDKISSHQKEDELR-SRGIVDSEDDLATKDRYIGSIESLI 451
AHRIGQ V I + E V+++ + E +L+ S +V D++ K+ G + SL+
Sbjct: 497 AHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVG--DNMEEKEEDGGDLRSLV 554
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 212/474 (44%), Gaps = 98/474 (20%)
Query: 8 GPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMK-------FNV 60
GPHL++ P +VL NW+ EL W PS + + Y G +S+E++++ FNV
Sbjct: 264 GPHLVVCPASVLENWERELRKWCPSFTVLQYHGAA---RAAYSRELNSLSKAGKPPPFNV 320
Query: 61 LVTTYEFIMY-------DRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRY--RCQRRL 111
L+ Y DR L + W +++DEA +KD++S ++L +RL
Sbjct: 321 LLVCYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRL 380
Query: 112 LLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKV 171
+LTGTPLQND P++F T+N + L +
Sbjct: 381 MLTGTPLQNDLHELWSLLEFMLPDIF------------------TTENVDLKKLLNAEDT 422
Query: 172 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIY----DWVKATGTLR 227
+I R+ IL PF+LRR DV L PK+ V M Q Y + +A R
Sbjct: 423 ELITRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQAR 482
Query: 228 LDPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL-------------------- 267
L K N + + ++N + RK NHPLL
Sbjct: 483 LVKLSSK---SLNSLAKALPKRQISNYFTQFRKIANHPLLIRRIYSDEDVIRIARKLHPI 539
Query: 268 -NYPF-------------FND------------------LSKEFIVESCGKLWILDRILI 295
+ F FND LS + ++ S K L +L
Sbjct: 540 GAFGFECSLDRVIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLS-AKCRTLAELLP 598
Query: 296 KLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCF 355
++++GHRVL+FS T +LDILE L + YRR+DG+T + DR++ + FN+ D F
Sbjct: 599 SMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNN-DKSIF 657
Query: 356 IFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 409
LLS RA G+GLNL ADTV+I+D D NP+ + QA R HRIGQ + V + +
Sbjct: 658 ACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRL 711
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 226/481 (46%), Gaps = 61/481 (12%)
Query: 11 LIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKL-----FSQEVSAMKFNVLVTTY 65
+I+ P +++ NW++E+ W+ + + L F++ SA++ VL+ +Y
Sbjct: 243 IIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQ--VLIISY 300
Query: 66 EFIMYDRSKLSKID-WKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXX 124
E SK + + ++ DEA R+K+ ++ R L C+RR+LL+GTP+QND
Sbjct: 301 ETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEE 360
Query: 125 XXXXXXXXXPEVFDNRKAFNDWFSKPF-QKEGPTQNAEDDWLETEKKVIIIHRLHQILEP 183
P + F ++ P PT E+ L ++ + +++Q
Sbjct: 361 FFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQ---- 416
Query: 184 FMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAY 243
F+LRR + LPPK+ V+ CKM+ +QS +Y+ ++ L+ + A
Sbjct: 417 FILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLK-----------RALAD 465
Query: 244 QVKQYKTLNNRCMELRKTCNHPLLNYP-----------FFNDLSKEFI------------ 280
KQ K L L+K CNHP L Y F N L EF
Sbjct: 466 NAKQTKVLA-YITALKKLCNHPKLIYDTIKSGNPGTVGFENCL--EFFPAEMFSGRSGAW 522
Query: 281 -------VESCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRID 332
VE GK+ +L R+L L+R T R++L S T+ LD+ + + RR + R+D
Sbjct: 523 TGGDGAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLD 582
Query: 333 GTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAV 392
G+T++ R+ + N P D F FLLS +A G GLNL A+ +V++DPD NP N++QA
Sbjct: 583 GSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAA 642
Query: 393 ARAHRIGQKREVKV---IYMEAVVDKISSHQKEDELRSRGIVDSEDDLATKDRYIGSIES 449
AR R GQK+ V V + + +K+ Q E + I + D +T+ + S E
Sbjct: 643 ARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTDNSTRQGNLLSTED 702
Query: 450 L 450
L
Sbjct: 703 L 703
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 139/481 (28%), Positives = 225/481 (46%), Gaps = 63/481 (13%)
Query: 11 LIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKL-----FSQEVSAMKFNVLVTTY 65
+I+ P +++ NW++E+ W+ + + L F++ SA++ VL+ +Y
Sbjct: 243 IIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQ--VLIISY 300
Query: 66 EFIMYDRSKLSKID-WKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXX 124
E SK + + ++ DEA R+K+ ++ R L C+RR+LL+GTP+QND
Sbjct: 301 ETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEE 360
Query: 125 XXXXXXXXXPEVFDNRKAFNDWFSKPF-QKEGPTQNAEDDWLETEKKVIIIHRLHQILEP 183
P + F ++ P PT E+ L ++ + +++Q
Sbjct: 361 FFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQ---- 416
Query: 184 FMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAY 243
F+LRR + LPPK+ V+ CKM+ +Q+ G L +++++ A
Sbjct: 417 FILRRTNALLSNHLPPKIIEVVCCKMTTLQTTY------NGCL-------CMQLKRALAD 463
Query: 244 QVKQYKTLNNRCMELRKTCNHPLLNYP-----------FFNDLSKEFI------------ 280
KQ K L L+K CNHP L Y F N L EF
Sbjct: 464 NAKQTKVLA-YITALKKLCNHPKLIYDTIKSGNPGTVGFENCL--EFFPAEMFSGRSGAW 520
Query: 281 -------VESCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRID 332
VE GK+ +L R+L L+R T R++L S T+ LD+ + + RR + R+D
Sbjct: 521 TGGDGAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLD 580
Query: 333 GTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAV 392
G+T++ R+ + N P D F FLLS +A G GLNL A+ +V++DPD NP N++QA
Sbjct: 581 GSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAA 640
Query: 393 ARAHRIGQKREVKV---IYMEAVVDKISSHQKEDELRSRGIVDSEDDLATKDRYIGSIES 449
AR R GQK+ V V + + +K+ Q E + I + D +T+ + S E
Sbjct: 641 ARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTDNSTRQGNLLSTED 700
Query: 450 L 450
L
Sbjct: 701 L 701
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/441 (28%), Positives = 200/441 (45%), Gaps = 55/441 (12%)
Query: 1 MEFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSC-IFYVGGKD---------------- 43
+ F Y P +II P +L W+ E W P I + +D
Sbjct: 427 LHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQGKASESDYD 486
Query: 44 --------HRSK---------LFSQEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIVID 86
H K L ++ +++ + +L+TTYE + KL I+W Y V+D
Sbjct: 487 SESSVDSDHEPKSKNTKKWDSLLNRVLNS-ESGLLITTYEQLRLQGEKLLNIEWGYAVLD 545
Query: 87 EAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDW 146
E R+++ +S + + + R+++TG P+QN P F
Sbjct: 546 EGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAE 605
Query: 147 FSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLR 206
FS P G NA + T + ++ L ++ P++LRR DV L K VL
Sbjct: 606 FSVPITV-GGYANASPLQVSTAYRCAVV--LRDLIMPYLLRRMKADVNAHLTKKTEHVLF 662
Query: 207 CKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHP- 265
C ++ Q + Y A+ + ++ +N Y + +RK CNHP
Sbjct: 663 CSLTVEQRSTYRAFLASSEV-----EQIFDGNRNSLYGIDV----------MRKICNHPD 707
Query: 266 LLNYPFFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRR 325
LL + E GK+ ++ +L ++ GHRVLLFS ++LDILE +L
Sbjct: 708 LLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANE 767
Query: 326 LVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNP 385
YRR+DG T ++ R + I +FN+ + D F+F+L+ + G G NL A+ V+I+DPD NP
Sbjct: 768 YSYRRMDGLTPVKQRMALIDEFNNSE-DMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNP 826
Query: 386 KNEEQAVARAHRIGQKREVKV 406
N+ QA RA RIGQK++V V
Sbjct: 827 SNDMQARERAWRIGQKKDVTV 847
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 216/481 (44%), Gaps = 73/481 (15%)
Query: 9 PHLIIVPNAVLVNWKSEL--YHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVLVTTYE 66
P +I+ P+ ++ +W E+ Y L +S + YVG R L Q NV++T+Y+
Sbjct: 1508 PSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQ---FNNHNVIITSYD 1564
Query: 67 FIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 126
+ D L++ W Y ++DE +K+ S + + + + Q RL+L+GTP+QN+
Sbjct: 1565 VVRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELW 1624
Query: 127 XXXXXXXPEVFDNRKAFNDWFSKP-FQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFM 185
P + F + KP P +A+D E V+ + LH+ + PF+
Sbjct: 1625 SLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKD----AEAGVLAMEALHKQVMPFL 1680
Query: 186 LRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGT-------LRLDPDDEKLKVQ 238
LRR E+V LP K+ C +SPVQ +Y+ + +++D +
Sbjct: 1681 LRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNAD 1740
Query: 239 KNP------AYQVKQYKTLNNRCMELRKTCNHPLL------NYPFFNDLSKEFIVESCG- 285
P +Q QY L K C+HPLL P +DL+ ++ C
Sbjct: 1741 VAPTKASTHVFQALQY---------LLKLCSHPLLVLGDKVTEPVASDLAA--MINGCSD 1789
Query: 286 ------------KLWILDRILIK-------------LQRTGHRVLLFSTMTKLLDILEEY 320
KL L IL + L HRVL+F+ LLDI+E+
Sbjct: 1790 IITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKD 1849
Query: 321 L---QWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVV 377
L + + Y R+DG+ E R + FN D + LL+ G GLNL SADT+V
Sbjct: 1850 LFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNS-DPTIDVLLLTTHVGGLGLNLTSADTLV 1908
Query: 378 IYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDELRSRGIVDSE 434
+ D NP + QA+ RAHR+GQKR V V I + +K+ S QK + ++++E
Sbjct: 1909 FMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAE 1968
Query: 435 D 435
+
Sbjct: 1969 N 1969
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 216/481 (44%), Gaps = 73/481 (15%)
Query: 9 PHLIIVPNAVLVNWKSEL--YHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVLVTTYE 66
P +I+ P+ ++ +W E+ Y L +S + YVG R L Q NV++T+Y+
Sbjct: 1539 PSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQ---FNNHNVIITSYD 1595
Query: 67 FIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXX 126
+ D L++ W Y ++DE +K+ S + + + + Q RL+L+GTP+QN+
Sbjct: 1596 VVRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELW 1655
Query: 127 XXXXXXXPEVFDNRKAFNDWFSKP-FQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFM 185
P + F + KP P +A+D E V+ + LH+ + PF+
Sbjct: 1656 SLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKD----AEAGVLAMEALHKQVMPFL 1711
Query: 186 LRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGT-------LRLDPDDEKLKVQ 238
LRR E+V LP K+ C +SPVQ +Y+ + +++D +
Sbjct: 1712 LRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNAD 1771
Query: 239 KNP------AYQVKQYKTLNNRCMELRKTCNHPLL------NYPFFNDLSKEFIVESCG- 285
P +Q QY L K C+HPLL P +DL+ ++ C
Sbjct: 1772 VAPTKASTHVFQALQY---------LLKLCSHPLLVLGDKVTEPVASDLAA--MINGCSD 1820
Query: 286 ------------KLWILDRILIK-------------LQRTGHRVLLFSTMTKLLDILEEY 320
KL L IL + L HRVL+F+ LLDI+E+
Sbjct: 1821 IITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKD 1880
Query: 321 L---QWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVV 377
L + + Y R+DG+ E R + FN D + LL+ G GLNL SADT+V
Sbjct: 1881 LFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNS-DPTIDVLLLTTHVGGLGLNLTSADTLV 1939
Query: 378 IYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDELRSRGIVDSE 434
+ D NP + QA+ RAHR+GQKR V V I + +K+ S QK + ++++E
Sbjct: 1940 FMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAE 1999
Query: 435 D 435
+
Sbjct: 2000 N 2000
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 29/300 (9%)
Query: 2 EFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMK---- 57
E K +GP L++ P +VL NW E+ + P + + Y GG R+ + + ++ +
Sbjct: 630 EEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERT-ILRKNINPKRMYRR 688
Query: 58 ---FNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLT 114
F++L+T+Y+ ++ D ++ W+Y+V+DEAQ +K S+ + L + C+ RLLLT
Sbjct: 689 DAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLT 748
Query: 115 GTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIII 174
GTP+QN+ P +FDN FN+WFSK G +AE E + +
Sbjct: 749 GTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSK-----GIENHAEHGGTLNEHQ---L 800
Query: 175 HRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEK 234
+RLH IL+PFMLRR +DV L K V + CK+S Q A Y +K +L +
Sbjct: 801 NRLHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISL------AE 854
Query: 235 LKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL-------NYPFFNDLSKEFIVESCGKL 287
L + K+ L N ++LRK CNHP L +Y +F S + G+L
Sbjct: 855 LFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPELFERNEGSSYLYFGVTSNSLLPHPFGEL 914
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 96/140 (68%), Gaps = 4/140 (2%)
Query: 280 IVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLED 339
++ GKL LD +L +L+ HRVLLF+ MTK+L+ILE+Y+ +R+ Y R+DG++++ D
Sbjct: 1201 LLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMD 1260
Query: 340 RESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIG 399
R + DF H SD F+FLLS RA G G+NL +ADTV+ Y+ D NP + QA+ RAHR+G
Sbjct: 1261 RRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1319
Query: 400 QKREVKV---IYMEAVVDKI 416
Q ++V V I E V +KI
Sbjct: 1320 QTKDVTVYRLICKETVEEKI 1339
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 159 bits (403), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 27/267 (10%)
Query: 4 KGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVLVT 63
KG +GPHLI+VP +V++NW++E W P+ + Y G R + F+V +T
Sbjct: 582 KGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCIT 641
Query: 64 TYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXX 123
TY ++ D + WKY+++DEA +K+ S + L + +RR+LLTGTPLQND
Sbjct: 642 TYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLM 701
Query: 124 XXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVI--IIHRLHQIL 181
P VF + + F DWF P +E ++K+ +I RLH +L
Sbjct: 702 ELWSLMHFLMPHVFQSHQEFKDWFCNPIA----------GMVEGQEKINKEVIDRLHNVL 751
Query: 182 EPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIY-DWVKATGTLRLDPDDEKLKVQKN 240
PF+LRR DVE LP K V+ C++S Q +Y D++ +T T
Sbjct: 752 RPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTET--------------Q 797
Query: 241 PAYQVKQYKTLNNRCMELRKTCNHPLL 267
+ + + M+LRK CNHP L
Sbjct: 798 ATLTSGSFFGMISIIMQLRKVCNHPDL 824
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 3/136 (2%)
Query: 271 FFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRR 330
+F D + I CGKL L +L KL+ GHR L+F+ MTK+LD+LE ++ Y R
Sbjct: 1063 YFPD--RRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMR 1120
Query: 331 IDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQ 390
+DG+T E+R++ + FN + F+F+LS R+ G G+NL ADTV+ YD D NP ++Q
Sbjct: 1121 LDGSTPPEERQTLMQRFN-TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQ 1179
Query: 391 AVARAHRIGQKREVKV 406
A R HRIGQ REV +
Sbjct: 1180 AQDRCHRIGQTREVHI 1195
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 153/332 (46%), Gaps = 60/332 (18%)
Query: 2 EFKGNYGPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKL-----------FS 50
E K +GP L++ P +VL NW E+ + P + + Y GG R+ L FS
Sbjct: 630 EEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRVMFFS 689
Query: 51 --------------------------QEVSAMK--FNVLVTTYEFIMYDRSKLSKIDWKY 82
Q +S M F++L+T+Y+ ++ D ++ W+Y
Sbjct: 690 TWIISFDPWAVRQICICKRACNVVRFQTLSDMDAGFHILITSYQLLVTDEKYFRRVKWQY 749
Query: 83 IVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKA 142
+V+DEAQ +K S+ + L + C+ RLLLTGTP+QN+ P +FDN
Sbjct: 750 MVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQ 809
Query: 143 FNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 202
FN+WFSK G +AE E + ++RLH IL+PFMLRR +DV L K
Sbjct: 810 FNEWFSK-----GIENHAEHGGTLNEHQ---LNRLHAILKPFMLRRVKKDVVSELTTKTE 861
Query: 203 VVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTC 262
V + CK+S Q A Y +K +L +L + K+ L N ++LRK C
Sbjct: 862 VTVHCKLSSRQQAFYQAIKNKISL------AELFDSNRGQFTDKKVLNLMNIVIQLRKVC 915
Query: 263 NHPLL-------NYPFFNDLSKEFIVESCGKL 287
NHP L +Y +F S + G+L
Sbjct: 916 NHPELFERNEGSSYLYFGVTSNSLLPHPFGEL 947
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 96/140 (68%), Gaps = 4/140 (2%)
Query: 280 IVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLED 339
++ GKL LD +L +L+ HRVLLF+ MTK+L+ILE+Y+ +R+ Y R+DG++++ D
Sbjct: 1234 LLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMD 1293
Query: 340 RESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIG 399
R + DF H SD F+FLLS RA G G+NL +ADTV+ Y+ D NP + QA+ RAHR+G
Sbjct: 1294 RRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1352
Query: 400 QKREVKV---IYMEAVVDKI 416
Q ++V V I E V +KI
Sbjct: 1353 QTKDVTVYRLICKETVEEKI 1372
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/461 (23%), Positives = 189/461 (40%), Gaps = 90/461 (19%)
Query: 10 HLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFN---------V 60
H ++ A++V K+ L HW+ ++ VG + + A +++ +
Sbjct: 421 HSKLIKRALVVAPKTLLPHWMKELAT---VGLSQMTREYYGTSTKAREYDLHHILQGKGI 477
Query: 61 LVTTYEFIMYDRSKLSKID------------WKYIVIDEAQRMKDRDSVLARDLDRYRCQ 108
L+TTY+ + + L D W Y+++DE +K+ ++ A+ L
Sbjct: 478 LLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSS 537
Query: 109 RRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQK---EGPTQNAEDDWL 165
R++++GTP+QN+ P + ++ +WF + ++ G +NA D
Sbjct: 538 HRIIISGTPIQNNLKELWALFNFSCPGLLGDK----NWFKQNYEHYILRGTDKNATDR-- 591
Query: 166 ETEKKVIIIHRLHQILEPFMLRRRVEDVEG------SLPPKVSVVLRCKMSPVQSAIYDW 219
E + L + ++PF LRR +V G L K +V+ +++ Q +Y+
Sbjct: 592 EQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEA 651
Query: 220 VKATGTLRLDPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL-----NYPFFND 274
+ + D L L+K C+HPLL
Sbjct: 652 FLNSEIVLSAFDGSPLAA-----------------LTILKKICDHPLLLTKRAAEDVLEG 694
Query: 275 LSKEFIVESCG---------------------------KLWILDRILIKLQRTGHRVLLF 307
+ E G KL + +L L GHRVL+F
Sbjct: 695 MDSTLTQEEAGVAERLAMHIADNVDTDDFQTKNDSISCKLSFIMSLLENLIPEGHRVLIF 754
Query: 308 STMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRG 367
S K+L+++++ L + RIDGTT DR + +F IFLL+ + G G
Sbjct: 755 SQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHV-APIFLLTSQVGGLG 813
Query: 368 LNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 408
L L AD V++ DP NP + Q+V RA+RIGQ ++V ++Y
Sbjct: 814 LTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDV-IVY 853
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 131/516 (25%), Positives = 202/516 (39%), Gaps = 135/516 (26%)
Query: 11 LIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVL--VTTYEFI 68
LI+ P VL NW+SE W+PS EV ++ +L V+ Y+F
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPS-------------------EVKPLRIFMLGDVSRYKF- 822
Query: 69 MYDRSKLSKIDWK--------------YIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLT 114
Y+R+ D +V DEA +K+ + + L + +CQRR+ LT
Sbjct: 823 FYERNFWGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALT 882
Query: 115 GTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQK-EGPTQNAEDDWLETEKKVII 173
G+PLQN+ + F + F P + + AED + ++
Sbjct: 883 GSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRS--- 939
Query: 174 IHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDE 233
H L++ L+ F+ R + V+ LPPK V+ K+SP+Q +Y DE
Sbjct: 940 -HILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTDE 998
Query: 234 KLKVQKNPAYQVKQYKTLNNRCMELRKTCNHP-----------------LLNYP------ 270
+++ AYQV L + NHP +++ P
Sbjct: 999 RMRKNFFAAYQV------------LAQILNHPGIPQLRSEDSKNGRRGSIVDIPDDCSSD 1046
Query: 271 --------------FFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFS-TMTKLLD 315
NDL ++ + K W +D LQ+ ++V FS M LLD
Sbjct: 1047 ENIDYNMVTGEKQRTMNDL-QDKVDGYLQKDWWVDL----LQKNNYKVSDFSGKMILLLD 1101
Query: 316 IL-----------------------EEYLQ-----------WRRLV-YRRIDGTTSLEDR 340
IL E YL W++ + RIDG T +R
Sbjct: 1102 ILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSER 1161
Query: 341 ESAIVDFNHPDSD-CFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIG 399
+ + FN PD+ L+S RA G+NL +A+ V+I D NP + QA+ RA R G
Sbjct: 1162 QKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYG 1221
Query: 400 QKREVKVIYMEA---VVDKISSHQKEDELRSRGIVD 432
QK+ V + A + +KI Q E + +VD
Sbjct: 1222 QKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1257
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 4/138 (2%)
Query: 272 FNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRI 331
F DLS V+ CGK+ L++++ G ++LLFS ++LDILE++L + + R+
Sbjct: 518 FMDLSD---VKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARL 574
Query: 332 DGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQA 391
DG+T R+S + DFN S +FL+S +A G GLNL SA+ VVI+DP+ NP ++ QA
Sbjct: 575 DGSTPTNLRQSLVDDFNASPSKQ-VFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQA 633
Query: 392 VARAHRIGQKREVKVIYM 409
R+ R GQKR V V +
Sbjct: 634 QDRSFRYGQKRHVVVFRL 651
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 7/211 (3%)
Query: 8 GPHLIIVPNAVLVNWKSELYHWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVLVTTYEF 67
GP LII P++++ NW+SE W Y G + +++ A VLVT+++
Sbjct: 199 GPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSN---RDMILEKLKARGVEVLVTSFDT 255
Query: 68 IMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXX 127
LS I+W+ ++ DEA R+K+ S L + ++R+ LTGT +QN
Sbjct: 256 FRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFN 315
Query: 128 XXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLR 187
P R+ F D++ +P K G A + +++ K L +L +MLR
Sbjct: 316 LFEWVAPGSLGTREHFRDFYDEPL-KLGQRATAPERFVQIADKR--KQHLGSLLRKYMLR 372
Query: 188 RRVEDVEGSL-PPKVSVVLRCKMSPVQSAIY 217
R E+ G L K V+ C+MS +Q +Y
Sbjct: 373 RTKEETIGHLMMGKEDNVVFCQMSQLQRRVY 403
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 129/517 (24%), Positives = 204/517 (39%), Gaps = 116/517 (22%)
Query: 11 LIIVPNAVLVNWKSELYHWLPSVSC---IFYVG--GKDHRSKLFSQ-EVSAMKFNVLVTT 64
LI+ P VL NW+SE W+PS IF +G ++ R L ++ F + T
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTN 842
Query: 65 YEFIMYDR-----------SKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLL 113
+ + R + +V DEA +K+ + + L + +CQRR+ L
Sbjct: 843 FRNLSLGRGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIAL 902
Query: 114 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQK-EGPTQNAEDDWLETEKKVI 172
TG+PLQN+ + F + F P + + AED + ++
Sbjct: 903 TGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRS-- 960
Query: 173 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDD 232
H L++ L+ F+ R + V+ LPPK V+ K+SP+Q +Y D
Sbjct: 961 --HILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTD 1018
Query: 233 EKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHP-----------------LLNYP----- 270
E+++ AYQV L + NHP +++ P
Sbjct: 1019 ERMRKNFFAAYQV------------LAQILNHPGIPQLRSEDSKNGRRGSIVDIPDDCSS 1066
Query: 271 ---------------FFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFS-TMTKLL 314
NDL ++ + K W +D LQ+ ++V FS M LL
Sbjct: 1067 DENIDYNMVTGEKQRTMNDL-QDKVDGYLQKDWWVDL----LQKNNYKVSDFSGKMILLL 1121
Query: 315 DIL-----------------------EEYLQ-----------WRRLV-YRRIDGTTSLED 339
DIL E YL W++ + RIDG T +
Sbjct: 1122 DILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSE 1181
Query: 340 RESAIVDFNHPDSD-CFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRI 398
R+ + FN PD+ L+S RA G+NL +A+ V+I D NP + QA+ RA R
Sbjct: 1182 RQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRY 1241
Query: 399 GQKREV---KVIYMEAVVDKISSHQKEDELRSRGIVD 432
GQK+ V +++ + +KI Q E + +VD
Sbjct: 1242 GQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1278
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 129/517 (24%), Positives = 204/517 (39%), Gaps = 116/517 (22%)
Query: 11 LIIVPNAVLVNWKSELYHWLPSVSC---IFYVG--GKDHRSKLFSQ-EVSAMKFNVLVTT 64
LI+ P VL NW+SE W+PS IF +G ++ R L ++ F + T
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTN 842
Query: 65 YEFIMYDR-----------SKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLL 113
+ + R + +V DEA +K+ + + L + +CQRR+ L
Sbjct: 843 FRNLSLGRGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIAL 902
Query: 114 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQK-EGPTQNAEDDWLETEKKVI 172
TG+PLQN+ + F + F P + + AED + ++
Sbjct: 903 TGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRS-- 960
Query: 173 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDD 232
H L++ L+ F+ R + V+ LPPK V+ K+SP+Q +Y D
Sbjct: 961 --HILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTD 1018
Query: 233 EKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHP-----------------LLNYP----- 270
E+++ AYQV L + NHP +++ P
Sbjct: 1019 ERMRKNFFAAYQV------------LAQILNHPGIPQLRSEDSKNGRRGSIVDIPDDCSS 1066
Query: 271 ---------------FFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFS-TMTKLL 314
NDL ++ + K W +D LQ+ ++V FS M LL
Sbjct: 1067 DENIDYNMVTGEKQRTMNDL-QDKVDGYLQKDWWVDL----LQKNNYKVSDFSGKMILLL 1121
Query: 315 DIL-----------------------EEYLQ-----------WRRLV-YRRIDGTTSLED 339
DIL E YL W++ + RIDG T +
Sbjct: 1122 DILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSE 1181
Query: 340 RESAIVDFNHPDSD-CFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRI 398
R+ + FN PD+ L+S RA G+NL +A+ V+I D NP + QA+ RA R
Sbjct: 1182 RQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRY 1241
Query: 399 GQKREV---KVIYMEAVVDKISSHQKEDELRSRGIVD 432
GQK+ V +++ + +KI Q E + +VD
Sbjct: 1242 GQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1278
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 129/517 (24%), Positives = 204/517 (39%), Gaps = 116/517 (22%)
Query: 11 LIIVPNAVLVNWKSELYHWLPSVSC---IFYVG--GKDHRSKLFSQ-EVSAMKFNVLVTT 64
LI+ P VL NW+SE W+PS IF +G ++ R L ++ F + T
Sbjct: 783 LIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTN 842
Query: 65 YEFIMYDR-----------SKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLL 113
+ + R + +V DEA +K+ + + L + +CQRR+ L
Sbjct: 843 FRNLSLGRGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIAL 902
Query: 114 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQK-EGPTQNAEDDWLETEKKVI 172
TG+PLQN+ + F + F P + + AED + ++
Sbjct: 903 TGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRS-- 960
Query: 173 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDD 232
H L++ L+ F+ R + V+ LPPK V+ K+SP+Q +Y D
Sbjct: 961 --HILYEQLKGFVQRMDMNVVKKDLPPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTD 1018
Query: 233 EKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHP-----------------LLNYP----- 270
E+++ AYQV L + NHP +++ P
Sbjct: 1019 ERMRKNFFAAYQV------------LAQILNHPGIPQLRSEDSKNGRRGSIVDIPDDCSS 1066
Query: 271 ---------------FFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFS-TMTKLL 314
NDL ++ + K W +D LQ+ ++V FS M LL
Sbjct: 1067 DENIDYNMVTGEKQRTMNDL-QDKVDGYLQKDWWVDL----LQKNNYKVSDFSGKMILLL 1121
Query: 315 DIL-----------------------EEYLQ-----------WRRLV-YRRIDGTTSLED 339
DIL E YL W++ + RIDG T +
Sbjct: 1122 DILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSE 1181
Query: 340 RESAIVDFNHPDSD-CFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRI 398
R+ + FN PD+ L+S RA G+NL +A+ V+I D NP + QA+ RA R
Sbjct: 1182 RQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRY 1241
Query: 399 GQKREV---KVIYMEAVVDKISSHQKEDELRSRGIVD 432
GQK+ V +++ + +KI Q E + +VD
Sbjct: 1242 GQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1278
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 118/500 (23%), Positives = 205/500 (41%), Gaps = 89/500 (17%)
Query: 8 GPHLIIVPNAVLVNWKSELYHWLP--SVSCIFYVGGKDHRS--KLFSQEVSAMKFNVLVT 63
G L++VP L W E+ S + Y G K ++ KL + + ++
Sbjct: 190 GHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPIVEN 249
Query: 64 TY---EFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQN 120
Y E + S L I W I++DEA +K+R S A+ + R L+GTPLQN
Sbjct: 250 EYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQN 309
Query: 121 DXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQI 180
D F ++ + S F+ T + V + +
Sbjct: 310 DVDELYSLVSYSFLNFF-----YSTYASFAFRHTHIT---------FARNVTVKFLIGGN 355
Query: 181 LEPFMLRRRVEDVEGSLPPKVSVVL----RCKMSPVQSAIYDWVKATGTLRLDPDDEKLK 236
+ P + R+E+V L +++ L R +S V++ Y+ + D +
Sbjct: 356 ILPLSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGT 415
Query: 237 VQKNPAYQVKQYKTLNNRCMELRKTCNHP-LLNYP--------------------FFNDL 275
+ N Y + + LR+ +HP L++Y F +D
Sbjct: 416 LMNN-------YAHIFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDP 468
Query: 276 SKEFIVESC------GKL------WILDRILIKLQRTGHRV------------------- 304
SK++ V S KL IL+RI + +T ++
Sbjct: 469 SKDYFVTSSEHQASKTKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERDWSAKA 528
Query: 305 LLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAA 364
++FS T LD++ L + ++ G+ S +++A+ +F + DC + L+S++A
Sbjct: 529 IVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKE-EPDCRVLLMSLQAG 587
Query: 365 GRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVI--YMEAVVDK--ISSHQ 420
G LNL +A V + DP NP E QA R HRIGQ + V+V+ ME V++ ++ +
Sbjct: 588 GVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQK 647
Query: 421 KEDELRSRGIVDSEDDLATK 440
K+++L + DSE+ + K
Sbjct: 648 KKEDLFESTLGDSEEAVVQK 667
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 126/291 (43%), Gaps = 41/291 (14%)
Query: 8 GPHLIIVPNAVLVNWKSEL-YHWLP-SVSCIFYVGG-KDHRSK-LFSQEVSAMKFNVLVT 63
G LII P A+L WK EL H P +VS + Y GG + H +K + S +V + VL +
Sbjct: 741 GGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTS 800
Query: 64 TYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXX 123
Y+ M + S +IDW IV+DEA +K + A+ R LTGTPLQN
Sbjct: 801 AYKQDMAN-SIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLE 859
Query: 124 XXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEP 183
E + N W+SK QK P +N + L+ + IL P
Sbjct: 860 DLYSLLCFLHVEPWCNWA----WWSKLIQK--PYENGDPRGLKL---------IKAILRP 904
Query: 184 FMLRRRVE--DVEGS----LPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKV 237
MLRR E D EGS LPP V+ C+ S + Y + ++ D + KV
Sbjct: 905 LMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKV 964
Query: 238 QKNPAYQVKQYKTLNNRCMELRKTCNHPLL--------NYPFFNDLSKEFI 280
N Y + + LR+ CNHP L Y + L++ F+
Sbjct: 965 LHN-------YANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFL 1008
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 295 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDC 354
IK +G + ++FS T LD+LE L+ R + R DG + + RE + +FN
Sbjct: 1121 IKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKT 1180
Query: 355 FIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKV 406
I L+S++A G GLNL +A +V + DP NP EEQA+ R HRIGQKR V V
Sbjct: 1181 -ILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFV 1231
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 300 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNH-PDSDCFIFL 358
G + ++F+ TK+LD+LE L+ + YRR DG ++ R++A+ DFN PD + +
Sbjct: 1113 AGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVS--VMI 1170
Query: 359 LSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDK 415
+S++AA GLN+ +A V++ D NP E+QA+ RAHRIGQ R VKV+ + V D+
Sbjct: 1171 MSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDR 1230
Query: 416 ISSHQKE 422
I + Q++
Sbjct: 1231 ILALQQK 1237
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 301 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNH-PDSDCFIFLL 359
G + ++F+ TK+LD+LE L+ + YRR DG ++ R++A+ DFN PD + ++
Sbjct: 1071 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVS--VMIM 1128
Query: 360 SIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKI 416
S++AA GLN+ +A V++ D NP E+QA+ RAHRIGQ R VKV+ + V D+I
Sbjct: 1129 SLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRI 1188
Query: 417 SSHQKE 422
+ Q++
Sbjct: 1189 LALQQK 1194
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 54/278 (19%)
Query: 11 LIIVPNAVLVNWKSELYHWL---PSVSCIFYVGGKDHRSKLFSQEVSAMKFNVLVTTYEF 67
LI+ P +++ W EL + +S + Y G + E++ K++V++TTY
Sbjct: 636 LIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDP---HELA--KYDVVITTYSL 690
Query: 68 IM-----------YDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGT 116
+ + L+++ W +V+DEAQ +K+ + + +RR L+GT
Sbjct: 691 VSKRKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGT 750
Query: 117 PLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKP---FQKEGPTQNAEDDWLETEKKVII 173
P+QN + + + + F + P + EG
Sbjct: 751 PIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGEG------------------ 792
Query: 174 IHRLHQILEPFMLRRRVED-VEG----SLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRL 228
L IL+ MLRR + ++G SLPPK + R + + Y +L
Sbjct: 793 YKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYS--------KL 844
Query: 229 DPDDEKLKVQKNPAYQVKQ-YKTLNNRCMELRKTCNHP 265
+ D + A VKQ Y + + LR+ C HP
Sbjct: 845 ECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 882
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 295 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDC 354
+ ++ G + ++FS TK+L++LE L + YRR+DGT S+ R+ A+ DFN +
Sbjct: 959 VPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTL-PEV 1017
Query: 355 FIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EA 411
+ ++S++AA GLN+ +A V++ D NP E+QA+ RAHRIGQ R V V+ +
Sbjct: 1018 TVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDT 1077
Query: 412 VVDKISSHQKEDEL 425
V D+I + Q++ +
Sbjct: 1078 VEDRILALQQKKRM 1091
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 75 LSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 134
L+K+ W +V+DEAQ +K+ + +AR R +RR L+GTP+QN
Sbjct: 624 LAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 683
Query: 135 EVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRR-RVEDV 193
+ + + F P T V +L IL+ MLRR + +
Sbjct: 684 DPYSSYVLFCSTIKNPI---------------TRNPVKGYQKLQAILKTVMLRRTKGSLL 728
Query: 194 EG----SLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAYQVKQYK 249
+G SLPPK + + + + Y ++A + E V++N Y
Sbjct: 729 DGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQN-------YV 781
Query: 250 TLNNRCMELRKTCNHPLL 267
+ + LR+ C+HPLL
Sbjct: 782 NILLMLLRLRQACDHPLL 799
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 295 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDC 354
+ ++ G + ++FS TK+L++LE L + YRR+DGT S+ R+ A+ DFN +
Sbjct: 1117 VPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTL-PEV 1175
Query: 355 FIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EA 411
+ ++S++AA GLN+ +A V++ D NP E+QA+ RAHRIGQ R V V+ +
Sbjct: 1176 TVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDT 1235
Query: 412 VVDKISSHQKEDEL 425
V D+I + Q++ +
Sbjct: 1236 VEDRILALQQKKRM 1249
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 75 LSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 134
L+K+ W +V+DEAQ +K+ + +AR R +RR L+GTP+QN
Sbjct: 782 LAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 841
Query: 135 EVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRR-RVEDV 193
+ + + F P T V +L IL+ MLRR + +
Sbjct: 842 DPYSSYVLFCSTIKNPI---------------TRNPVKGYQKLQAILKTVMLRRTKGSLL 886
Query: 194 EG----SLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAYQVKQYK 249
+G SLPPK + + + + Y ++A + E V++N Y
Sbjct: 887 DGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQN-------YV 939
Query: 250 TLNNRCMELRKTCNHPLL 267
+ + LR+ C+HPLL
Sbjct: 940 NILLMLLRLRQACDHPLL 957
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 271 FFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRR 330
F D+ K ++ S K+ L L L+ +G + +LFS T LD+L+ L + R
Sbjct: 851 FQVDVEKNWVESS--KITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVR 908
Query: 331 IDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQ 390
+DGT S + RE + +F+ D + L+S++A G G+NL +A + DP NP EEQ
Sbjct: 909 LDGTLSQQQREKVLKEFSE-DGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQ 967
Query: 391 AVARAHRIGQKREVKV 406
AV R HRIGQ +EVK+
Sbjct: 968 AVMRIHRIGQTKEVKI 983
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 126/298 (42%), Gaps = 53/298 (17%)
Query: 8 GPHLIIVPNAVLVNWKSEL-YHWLPSVSCIF--YVGGKDHRSKLFSQEVSAMKFNVLVTT 64
G +LI+ P +L WK+E+ H P ++ Y + +KL SQ +V++TT
Sbjct: 490 GGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQS------DVVITT 543
Query: 65 YEFIMYDRSK--------LSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGT 116
Y + + S+ + + W IV+DEA +K+ S ++ RR LTGT
Sbjct: 544 YGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGT 603
Query: 117 PLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHR 176
P+QN+ E + +N KPF+ EG + +
Sbjct: 604 PIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFE-EGDERG--------------LKL 648
Query: 177 LHQILEPFMLRR--RVEDVEG----SLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDP 230
+ IL+P MLRR D EG LPP + V+ C++S + YD + ++ D
Sbjct: 649 VQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQ 708
Query: 231 DDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLL--------NYPFFNDLSKEFI 280
E+ KV N Y ++ + LR+ C+HP L Y N LSK F+
Sbjct: 709 FVEQGKVLHN-------YASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFL 759
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 305 LLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPD-SDCFIFLLSIRA 363
++FS K+L +LE L+ R+DG +++ R I +F +P+ + + L S++A
Sbjct: 710 VVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKA 769
Query: 364 AGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 411
+G G+NL +A V ++DP NP EEQA+ R HRIGQK+EVK+I M A
Sbjct: 770 SGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIA 817
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 48/302 (15%)
Query: 11 LIIVPNAVLVNWKSELY-HWLPSVSCIF-YVGGK--DHRSKLFSQEVSAMKFNVLVTTYE 66
LI+ P +V+ W ++L H +P + ++ Y GG+ D ++L MK+++++TTY
Sbjct: 342 LIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVNEL-------MKYDIVLTTYG 394
Query: 67 FIM----YDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDX 122
+ ++ S + K++W I++DEA +K+ ++ +R + + + RR +TGTP+QN
Sbjct: 395 TLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGS 454
Query: 123 XXXXXXXXXXXPEVFDNRKAFNDWFSKPF---QKEGPTQNAEDDWLETEKKVIIIHRLHQ 179
E F + + +P K+G + RL
Sbjct: 455 FDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKG------------------LSRLQV 496
Query: 180 ILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQK 239
++ LRR E LPPK ++SP + +YD ++ + K VQ
Sbjct: 497 LMATISLRRTKEKSLIGLPPKTVETCYVELSPEERQLYDHMEG---------EAKGVVQN 547
Query: 240 --NPAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFIVESCG-KLWILDRILIK 296
N ++ Y T+ + + LR+ C+ L P + VE K +L +++
Sbjct: 548 LINNGSLMRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDKPELLQKLVAA 607
Query: 297 LQ 298
LQ
Sbjct: 608 LQ 609
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 76/123 (61%), Gaps = 4/123 (3%)
Query: 303 RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIR 362
+ ++FS T +LD++E L + +RR+DGT SL R+ A+ +F++ D D + ++S++
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSN-DPDVKVMIMSLK 886
Query: 363 AAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSH 419
A GLN+ +A V++ D NP E+QA+ RAHRIGQ R V V + V D+I +
Sbjct: 887 AGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILAL 946
Query: 420 QKE 422
Q+E
Sbjct: 947 QEE 949
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 29/223 (13%)
Query: 71 DRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 130
D L+K+ W +V+DEAQ +K+ + +AR R +RR L+GTP+QN
Sbjct: 462 DSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFR 521
Query: 131 XXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRR-R 189
+ + K+F P + + L+ KK L +L MLRR +
Sbjct: 522 FLKYDPYAVYKSFCHQIKGPISR---------NSLQGYKK------LQAVLRAIMLRRTK 566
Query: 190 VEDVEG----SLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDD-EKLKVQKNPAYQ 244
++G +LPPK + + S + + Y ++L+ D + K
Sbjct: 567 GTLLDGQPIINLPPKTINLSQVDFSVEERSFY--------VKLESDSRSQFKAYAAAGTL 618
Query: 245 VKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFIVESCGKL 287
+ Y + + LR+ C+HP L + +D + E+ KL
Sbjct: 619 NQNYANILLMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVKKL 661
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/423 (23%), Positives = 177/423 (41%), Gaps = 65/423 (15%)
Query: 9 PHLIIVPNAVLVNWKSELYHWL---------------PSVSCIFYVGGKDHRSKLFSQEV 53
P LII P+++ ++W + ++ WL S C F + + + + V
Sbjct: 216 PVLIIAPSSLRLHWATMIHQWLHVPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDGV 275
Query: 54 SAMKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKD----RDSVLARDLDRYRCQR 109
FN++ +Y+ + L +D+K ++ DE+ +K+ R S + + Q
Sbjct: 276 ----FNIV--SYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKK--AQY 327
Query: 110 RLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEK 169
+LL+GTP + P+V+ N + + K G Q A +
Sbjct: 328 AILLSGTPALSRPIELFKQLEALYPDVYRNIHEYGGRYCKG-GFFGTYQGASNH------ 380
Query: 170 KVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRL 228
LH +++ M+RR +DV LP K Q D L
Sbjct: 381 -----DELHNLMKATVMIRRLKKDVLTELPSKRR----------QQVFLD---------L 416
Query: 229 DPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKEFIVESCGKLW 288
D K Q N + + K + ++ + + L + N ++K + + K+
Sbjct: 417 AAKDMK---QINALFH--ELKVVKSKIKDCISEDDIKSLKFIEKNLINKIYTDSAVAKIP 471
Query: 289 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN 348
+ L + G + L+F+ +L+ L ++L+ +++ RIDG+T R++ + DF
Sbjct: 472 AVLDYLENVIEAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQ 531
Query: 349 HPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 408
D + +LSIRAAG G+ L +A TV+ + P + QA RAHRIGQ V + Y
Sbjct: 532 DKD-EIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHY 590
Query: 409 MEA 411
+ A
Sbjct: 591 LLA 593
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 303 RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIR 362
+ ++FS T +LD++E + + +RR+DGT SL R+ A+ +F+ D + L+S++
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSK-KPDVKVMLMSLK 952
Query: 363 AAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSH 419
A GLN+ +A V++ D NP E+QA+ RAHRIGQ R V V + + V D+I
Sbjct: 953 AGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKL 1012
Query: 420 QKE 422
Q+E
Sbjct: 1013 QEE 1015
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 27/202 (13%)
Query: 71 DRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 130
D L K+ W IV+DEAQ +K+ + +AR R +RR L+GTP+QN
Sbjct: 533 DCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFR 592
Query: 131 XXXPEVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRR-R 189
+ + K+F P + + KK L +L MLRR +
Sbjct: 593 FLRYDPYAVYKSFYSTIKVPISRNS---------CQGYKK------LQAVLRAIMLRRTK 637
Query: 190 VEDVEG----SLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAYQV 245
++G +LPPKV + + S + + Y ++A + K +
Sbjct: 638 GTLLDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSR-------SQFKAYADAGTLS 690
Query: 246 KQYKTLNNRCMELRKTCNHPLL 267
+ Y + + LR+ C+HP L
Sbjct: 691 QNYANILLLLLRLRQACDHPQL 712
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 182/449 (40%), Gaps = 79/449 (17%)
Query: 11 LIIVPNAVLVNWKSELYHW----LPSVSCIFYVGGKDHRS---KLFSQEVSAMKFNVLVT 63
L+++P ++ +WK E W +P + FY + R K+ Q + ++L
Sbjct: 319 LVVLPKGIIESWKREFTLWEVEKIPLLD--FYSVKAESRKQQLKVLGQWIKER--SILFL 374
Query: 64 TYE----FIMYDRSKLSKIDWKYI--------VIDEAQRMKDRDSVLARDLDRYRCQRRL 111
Y+ I D + + D K I ++DE +++++ + L R + +R++
Sbjct: 375 GYQQFTRIICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKV 434
Query: 112 LLTGTPLQNDXXXXXXXXXXXXPEVFD---NRKAFNDWFSKPFQKEGPTQNAEDDWLE-- 166
+LTGT QN+ P+ R+ + SK G N +E
Sbjct: 435 VLTGTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSSSSIEGT 494
Query: 167 --------------TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCKMSPV 212
K +I L ++ +L D G LP + +S +
Sbjct: 495 FFAAVELTLQRSTNFSAKASLIKDLREMTRN-ILHYHKADFSGLLPGLSEFTVMLNLSSI 553
Query: 213 Q---------SAIYDWVKATGTLRLDPDDEKLK--VQKNPAYQVKQYKTLNNRCMELRKT 261
Q ++ + L + P KLK +++NP+ K + N M+L K
Sbjct: 554 QRDEVKGLRKMELFKQISLGAALYIHP---KLKSFLEENPSNGEKGFSDNNTTVMKLDK- 609
Query: 262 CNHPLLNYPFFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 321
+ K+ V K+ +L + TG ++L+FS + LE +
Sbjct: 610 -------------MLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLM 656
Query: 322 Q----WR--RLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADT 375
WR + ++ I G +S E RE ++ FN+ + +F SI+A G G++L A
Sbjct: 657 SSMKGWRLGKEMFT-ITGDSSNEQREWSMERFNN-SLEAKVFFGSIKACGEGISLVGASR 714
Query: 376 VVIYDPDPNPKNEEQAVARAHRIGQKREV 404
V+I D NP +QAVARA+R GQKR+V
Sbjct: 715 VLILDVHLNPSVTQQAVARAYRPGQKRKV 743
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 291 DRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNH 349
+ I ++R G + ++FS T LD++ L + ++ G+ ++ R++AI F
Sbjct: 669 EEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKE 728
Query: 350 PDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 409
D DC +FL+S++A G LNL A V + DP NP E QA R HRIGQ + ++V+
Sbjct: 729 -DPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRF 787
Query: 410 ---EAVVDKISSHQKEDELRSRGIV 431
V ++I QK+ EL G V
Sbjct: 788 IIENTVEERILRLQKKKELVFEGTV 812
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 54/353 (15%)
Query: 83 IVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKA 142
+V+DEA +++ S + + L + Q+R+LL+GTP QN+ P+ +
Sbjct: 1008 LVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVLGLARPKYLER--- 1064
Query: 143 FNDWFSKPFQKEGPTQNAEDDW-LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 201
+ +K G T L E I L ++ PF+ + ++ SLP
Sbjct: 1065 ----LTSTLKKSGMTVTKRGKKNLGNEINNRGIEELKAVMLPFVHVHKGSILQSSLPGLR 1120
Query: 202 SVVLRCKMSPVQSAIYDWVKAT---GTLRLDPDDEKLKVQKNPAYQVKQYKTLNNRCM-- 256
V+ +Q + + ++ T T + + KL + V + +L +RC
Sbjct: 1121 ECVVVLNPPELQRRVLESIEVTHNRKTKNVFETEHKLSL-------VSVHPSLVSRCKIS 1173
Query: 257 -ELRKTCNHPLL----------NYPFFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVL 305
+ R + + LL N EF VE C + +VL
Sbjct: 1174 EKERLSIDEALLAQLKKVRLDPNQSVKTRFLMEF-VELC-------------EVIKEKVL 1219
Query: 306 LFSTMTKLLDILEEYL----QW---RRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFL 358
+FS L ++ ++L +W ++Y + G + R++ I +FN P S +FL
Sbjct: 1220 VFSQYIDPLKLIMKHLVSRFKWNPGEEVLY--MHGKLEQKQRQTLINEFNDPKSKAKVFL 1277
Query: 359 LSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 411
S +A G++L A V++ D NP E QA++RA+RIGQKR V ++ A
Sbjct: 1278 ASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVA 1330
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 136/348 (39%), Gaps = 56/348 (16%)
Query: 83 IVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKA 142
+V+DE +++ S++ + L R ++R+ L+GT QN+ P D +
Sbjct: 744 LVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLCLARPADKDTISS 803
Query: 143 FNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 202
SK Q EG ++ + K +I H +H + E +L+ SLP
Sbjct: 804 RIHELSKCSQ-EGEHGRVNEENRIVDLKAMIAHFVH-VHEGTILQE-------SLPGLRD 854
Query: 203 VVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAYQVKQYKTLNNRCMELRKTC 262
V+ Q I D R+D + + +L
Sbjct: 855 CVVVLNPPFQQKKILD--------RIDTSQNTFEFEH-----------------KLSAVS 889
Query: 263 NHPLLNYPFFNDLSKEFIVESCGKLWILDRILIKLQRTGHRVLLF------STMTKLLDI 316
HP L Y N KE +V L L R+ +K + L T+ + + +
Sbjct: 890 VHPSL-YLCCNPTKKEDLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLV 948
Query: 317 LEEYLQWRRLVYRRI---------------DGTTSLEDRESAIVDFNHPDSDCFIFLLSI 361
+Y+ +L+ ++ G DR+ I +FN PDS + L S
Sbjct: 949 YSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLAST 1008
Query: 362 RAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 409
+A G++L A VVI D NP E QA++RA RIGQKR V + ++
Sbjct: 1009 KACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHL 1056
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 299 RTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSDCFIFL 358
R+ ++++F+ K+LD ++E++ + + + RIDGTT DR+ A+ F S+ I +
Sbjct: 552 RSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQF-SSEVKIAI 610
Query: 359 LSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 411
+ + A G GL+ +A VV + P QA RAHR GQ V V A
Sbjct: 611 IGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCA 663
>AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family
protein | chr1:2501981-2510488 REVERSE LENGTH=2001
Length = 2001
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 21/161 (13%)
Query: 249 KTLNNRCMELRKTCNHP-LLNYPFFNDLSK--------EFIVESCGKLWILDRILIKLQR 299
+TLN+ +RKTC+HP +++ L+K + +++ GKL +LD++L +++
Sbjct: 518 ETLNS----VRKTCDHPYVMDASLKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKK 573
Query: 300 TGHRVLLFSTMTK------LLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSD 353
G + ++F T+ L +ILE+++ +R + + + SAI +FN +S
Sbjct: 574 NGLKAVVFYQATQTPEGLLLGNILEDFV-GQRFGPKSYEHGIYSSKKNSAINNFNK-ESQ 631
Query: 354 CFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVAR 394
C + LL RA + + L AD +++ NP ++ + V +
Sbjct: 632 CCVLLLETRACSQTIKLLRADAFILFGSSLNPSHDVKHVEK 672
>AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family
protein | chr1:2501981-2510488 REVERSE LENGTH=2001
Length = 2001
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 21/161 (13%)
Query: 249 KTLNNRCMELRKTCNHP-LLNYPFFNDLSK--------EFIVESCGKLWILDRILIKLQR 299
+TLN+ +RKTC+HP +++ L+K + +++ GKL +LD++L +++
Sbjct: 518 ETLNS----VRKTCDHPYVMDASLKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKK 573
Query: 300 TGHRVLLFSTMTK------LLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHPDSD 353
G + ++F T+ L +ILE+++ +R + + + SAI +FN +S
Sbjct: 574 NGLKAVVFYQATQTPEGLLLGNILEDFV-GQRFGPKSYEHGIYSSKKNSAINNFNK-ESQ 631
Query: 354 CFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVAR 394
C + LL RA + + L AD +++ NP ++ + V +
Sbjct: 632 CCVLLLETRACSQTIKLLRADAFILFGSSLNPSHDVKHVEK 672
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 287 LWILDRILIKLQRTGHRVLLF----STMTKLLDILEEYLQWRR-LVYRRIDGTTSLEDRE 341
+++L+ + ++R ++L+F + + L++ E +W+R + G L +R
Sbjct: 1060 MFVLNLVFRVVKR--EKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERG 1117
Query: 342 SAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQK 401
I F P + L SI A G++L +A V++ D + NP +QA+ARA R GQ+
Sbjct: 1118 RVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQ 1177
Query: 402 REVKVIYMEAVVDK 415
KV+Y+ ++ +
Sbjct: 1178 ---KVVYVYQLLSR 1188
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 75 LSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 134
L+K+ W +V+DEAQ +K+ + +AR R +RR L+GTP+QN
Sbjct: 789 LAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 848
Query: 135 EVFDNRKAFNDWFSKPFQKEGPTQNAEDDWLETEKKVIIIHRLHQILEPFMLRR-RVEDV 193
+ + + F P T V +L IL+ MLRR + +
Sbjct: 849 DPYSSYVLFCSTIKNPI---------------TRNPVKGYQKLQAILKTVMLRRTKGSLL 893
Query: 194 EG----SLPPKVSVVLRCKMSPVQSAIYDWVKATGTLRLDPDDEKLKVQKNPAYQVKQYK 249
+G SLPPK + + + + Y ++A + E V++N Y
Sbjct: 894 DGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQN-------YV 946
Query: 250 TLNNRCMELRKTCNHPLL 267
+ + LR+ C+HPLL
Sbjct: 947 NILLMLLRLRQACDHPLL 964
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 300 TGHRVLLFSTMTKLLDILEEYLQ----WR--RLVYRRIDGTTSLEDRESAIVDFNH-PDS 352
G ++L+FS L LE W+ + V+ + G TS E RE ++ FN PD+
Sbjct: 709 AGEKLLVFSQYLIPLKFLERLAALAKGWKLGKEVFV-LTGNTSSEQREWSMETFNSSPDA 767
Query: 353 DCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREV 404
IF SI+A G G++L A ++I D NP QA+ RA R GQK+ V
Sbjct: 768 K--IFFGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMV 817
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 287 LWILDRILIKLQRTGHRVLLF----STMTKLLDILEEYLQWRR-LVYRRIDGTTSLEDRE 341
+++L+ I ++R ++L+F + + ++ E +W+R + G L +R
Sbjct: 1066 MFVLNLIFRVVKR--EKILIFCHNIAPIRMFTELFENIFRWQRGREILTLTGDLELFERG 1123
Query: 342 SAIVDFNHPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQK 401
I F P + + L SI A G++L +A V++ D + NP +QA+ARA R GQ+
Sbjct: 1124 RVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQ 1183
Query: 402 REVKVIYMEAVVDK 415
KV+Y+ ++ +
Sbjct: 1184 ---KVVYVYQLLSR 1194
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 292 RIL-IKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNHP 350
RIL IK +VL+FS+ +LD+LE + R+ G ++AI F
Sbjct: 1439 RILWIKSSDPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGG---RKSQTAISKFKGS 1495
Query: 351 DSDCF-------------IFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHR 397
+ + + LL ++ GLNL A V++ +P NP E QAV R HR
Sbjct: 1496 EKETQKTNSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHR 1555
Query: 398 IGQKREVKV 406
IGQ++ V
Sbjct: 1556 IGQEKPTLV 1564