Miyakogusa Predicted Gene
- Lj3g3v2341090.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2341090.1 tr|G7LBQ1|G7LBQ1_MEDTR ATP-dependent helicase BRM
OS=Medicago truncatula GN=MTR_8g030550 PE=4 SV=1,80.2,0,seg,NULL;
SNF2_N,SNF2-related; P-loop containing nucleoside triphosphate
hydrolases,NULL; coiled-coi,CUFF.43952.1
(1050 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 850 0.0
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 850 0.0
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 117 5e-26
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 117 5e-26
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 117 6e-26
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 89 1e-17
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 87 8e-17
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 69 2e-11
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 69 2e-11
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 69 2e-11
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 68 3e-11
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 68 3e-11
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 65 3e-10
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 65 3e-10
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 64 4e-10
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 63 1e-09
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 60 1e-08
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/960 (53%), Positives = 627/960 (65%), Gaps = 39/960 (4%)
Query: 98 NFSSPTPSAMQQPQQSRKFTDLPQHGSNQGNHVRGQGSEQQMLNPVQQAYLQYAFQAVQQ 157
NF+S +P +MQ PQQSR F + PQ Q QQ NP+QQAY+Q+A QA Q
Sbjct: 88 NFAS-SPGSMQMPQQSRNFFESPQQQQQQQQQGSSTQEGQQNFNPMQQAYIQFAMQAQHQ 146
Query: 158 NPSLGIHSQQQTKMGMLSPANL-KDQEMRMGNLKMQDVMSMQAVNQAQGSSSRNSSEHVA 216
+QQQ +MGM+ +++ KDQ+ RMG L MQD + +Q Q SSS+ S + A
Sbjct: 147 K------AQQQARMGMVGSSSVGKDQDARMGMLNMQD---LNPSSQPQASSSKPSGDQFA 197
Query: 217 RGERQMEQGQQVTPDQKNEGNLSTP----GPARHLIPGNMTRPTQAPDPQQGNQTVANTQ 272
RGERQ E Q Q+NE S P G L+PGNM RP QAP QQ + N Q
Sbjct: 198 RGERQTESSSQ----QRNETK-SHPQQQVGTG-QLMPGNMIRPMQAPQAQQLVNNMGNNQ 251
Query: 273 IAVASQLQAVQAWARERNIDLSHPANAHFMAQIIPLMQSRMVAQPKVSESNIGAQSSPVP 332
+A A Q QA+QAWARERNIDLSHPANA MA I +Q+RM AQ K E N+ +QS +P
Sbjct: 252 LAFAQQWQAMQAWARERNIDLSHPANASQMAHI---LQARMAAQQKAGEGNVASQSPSIP 308
Query: 333 VSKQLVNSPXXXXXXXXXXXXXXXXXXXXXXXKARQTVQPSHLSATANAGIAGNSRDLAM 392
+S Q +S KAR + ++T++ + + AM
Sbjct: 309 ISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTGSFASTSSPRMV----NPAM 364
Query: 393 QQFNVHGRESQASLR-LV--GNTMPSMHSQQSSSDLNLGADPPLNAKTSTSGPEPPQMQY 449
F+ GRE+ R LV N MPS + Q+S++ D + K S E QMQ
Sbjct: 365 NPFSGQGRENPMYPRHLVQPTNGMPSGNPLQTSANETPVLDQNASTKKSLGPAEHLQMQQ 424
Query: 450 IRQLNESTPQAGGPTNEGGSGNYAKSQGAPIQMPEQRGGFTKPQLHVLKAQILAFRRLKK 509
RQLN TP P++ G N + G Q +QR GFTK QLHVLKAQILAFRRLKK
Sbjct: 425 PRQLNTPTPNLVAPSDTGPLSNSSLQSGQGTQQAQQRSGFTKQQLHVLKAQILAFRRLKK 484
Query: 510 GEGTLPQELLRAIAPPPLEVQAQHPNHPAGGQNQDKSAGNIMAEQPRHAESNAKDSQSIP 569
GEG+LP ELL+AI+PPPLE+Q Q PA G+ QD+S+ +Q R E K+SQ+
Sbjct: 485 GEGSLPPELLQAISPPPLELQTQRQISPAIGKVQDRSSDKTGEDQARSLEC-GKESQAAA 543
Query: 570 AVNGHSSLKQELFVKEKKSTLPPVHAQSVMPSVSKEPASALSSGKEEQQPTGCSFKSNQD 629
+ NG K+E V + + L H+Q + ++ KE S + KEEQQ KS+Q
Sbjct: 544 SSNGPIFSKEEDNVGDTEVALTTGHSQ-LFQNLGKEATSTDVATKEEQQTDVFPVKSDQG 602
Query: 630 SEHGNNSTPVRNELALDRGKAIAPLASVSDTMQITKTAQASTVSQPKDGGSTRKYHGPLF 689
++ P R++ D+GKA+A SD Q QA++ PKD S RKY+GPLF
Sbjct: 603 ADSSTQKNP-RSDSTADKGKAVA-----SDGSQSKVPPQANSPQPPKDTASARKYYGPLF 656
Query: 690 DFPSFTRKPDSFGSSTMVNNNNLSLAYDVKDLLLEEGMEVLNKKRTENLKKIEGLLAVNI 749
DFP FTRK DS+GS+T NNNL+LAYD+KDL+ EEG E L+KKRT++LKKI GLLA N+
Sbjct: 657 DFPFFTRKLDSYGSATANANNNLTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNL 716
Query: 750 ERKRIRPDLVLKLQIEEKKXXXXXXXXXXXXXXXXXXXEIMAMPDRPYRKFVRLCERQRM 809
ERKRIRPDLVL+LQIEEKK EIM+MPDRPYRKFVRLCERQR+
Sbjct: 717 ERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEIMSMPDRPYRKFVRLCERQRL 776
Query: 810 ELARQVQASRRALREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKH 869
E+ RQV A+++A+REKQLK+IF WRKKLLEAHWAIRDARTARNRGVAKYHE+MLREFSK
Sbjct: 777 EMNRQVLANQKAVREKQLKTIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKR 836
Query: 870 KDDDRHKRMEALKNNDVDRYREMLLEQQSSIPGEASERYAVLSSFLSQTEEYLHKLGSKI 929
KDD R+KRMEALKNNDV+RYREMLLEQQ+++PG+A+ERYAVLSSFL+QTE+YLHKLG KI
Sbjct: 837 KDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDAAERYAVLSSFLTQTEDYLHKLGGKI 896
Query: 930 TXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVN 989
T RLQGLSEEEVRAAA CA EEV+IRNRF EMNAP+++SSVN
Sbjct: 897 TATKNQQEVEEAANAAAVAARLQGLSEEEVRAAATCAREEVVIRNRFTEMNAPKENSSVN 956
Query: 990 KYYNLAHAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
KYY LAHAVNEVV+RQPS+L+AGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV
Sbjct: 957 KYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1016
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/960 (53%), Positives = 627/960 (65%), Gaps = 39/960 (4%)
Query: 98 NFSSPTPSAMQQPQQSRKFTDLPQHGSNQGNHVRGQGSEQQMLNPVQQAYLQYAFQAVQQ 157
NF+S +P +MQ PQQSR F + PQ Q QQ NP+QQAY+Q+A QA Q
Sbjct: 88 NFAS-SPGSMQMPQQSRNFFESPQQQQQQQQQGSSTQEGQQNFNPMQQAYIQFAMQAQHQ 146
Query: 158 NPSLGIHSQQQTKMGMLSPANL-KDQEMRMGNLKMQDVMSMQAVNQAQGSSSRNSSEHVA 216
+QQQ +MGM+ +++ KDQ+ RMG L MQD + +Q Q SSS+ S + A
Sbjct: 147 K------AQQQARMGMVGSSSVGKDQDARMGMLNMQD---LNPSSQPQASSSKPSGDQFA 197
Query: 217 RGERQMEQGQQVTPDQKNEGNLSTP----GPARHLIPGNMTRPTQAPDPQQGNQTVANTQ 272
RGERQ E Q Q+NE S P G L+PGNM RP QAP QQ + N Q
Sbjct: 198 RGERQTESSSQ----QRNETK-SHPQQQVGTG-QLMPGNMIRPMQAPQAQQLVNNMGNNQ 251
Query: 273 IAVASQLQAVQAWARERNIDLSHPANAHFMAQIIPLMQSRMVAQPKVSESNIGAQSSPVP 332
+A A Q QA+QAWARERNIDLSHPANA MA I +Q+RM AQ K E N+ +QS +P
Sbjct: 252 LAFAQQWQAMQAWARERNIDLSHPANASQMAHI---LQARMAAQQKAGEGNVASQSPSIP 308
Query: 333 VSKQLVNSPXXXXXXXXXXXXXXXXXXXXXXXKARQTVQPSHLSATANAGIAGNSRDLAM 392
+S Q +S KAR + ++T++ + + AM
Sbjct: 309 ISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTGSFASTSSPRMV----NPAM 364
Query: 393 QQFNVHGRESQASLR-LV--GNTMPSMHSQQSSSDLNLGADPPLNAKTSTSGPEPPQMQY 449
F+ GRE+ R LV N MPS + Q+S++ D + K S E QMQ
Sbjct: 365 NPFSGQGRENPMYPRHLVQPTNGMPSGNPLQTSANETPVLDQNASTKKSLGPAEHLQMQQ 424
Query: 450 IRQLNESTPQAGGPTNEGGSGNYAKSQGAPIQMPEQRGGFTKPQLHVLKAQILAFRRLKK 509
RQLN TP P++ G N + G Q +QR GFTK QLHVLKAQILAFRRLKK
Sbjct: 425 PRQLNTPTPNLVAPSDTGPLSNSSLQSGQGTQQAQQRSGFTKQQLHVLKAQILAFRRLKK 484
Query: 510 GEGTLPQELLRAIAPPPLEVQAQHPNHPAGGQNQDKSAGNIMAEQPRHAESNAKDSQSIP 569
GEG+LP ELL+AI+PPPLE+Q Q PA G+ QD+S+ +Q R E K+SQ+
Sbjct: 485 GEGSLPPELLQAISPPPLELQTQRQISPAIGKVQDRSSDKTGEDQARSLEC-GKESQAAA 543
Query: 570 AVNGHSSLKQELFVKEKKSTLPPVHAQSVMPSVSKEPASALSSGKEEQQPTGCSFKSNQD 629
+ NG K+E V + + L H+Q + ++ KE S + KEEQQ KS+Q
Sbjct: 544 SSNGPIFSKEEDNVGDTEVALTTGHSQ-LFQNLGKEATSTDVATKEEQQTDVFPVKSDQG 602
Query: 630 SEHGNNSTPVRNELALDRGKAIAPLASVSDTMQITKTAQASTVSQPKDGGSTRKYHGPLF 689
++ P R++ D+GKA+A SD Q QA++ PKD S RKY+GPLF
Sbjct: 603 ADSSTQKNP-RSDSTADKGKAVA-----SDGSQSKVPPQANSPQPPKDTASARKYYGPLF 656
Query: 690 DFPSFTRKPDSFGSSTMVNNNNLSLAYDVKDLLLEEGMEVLNKKRTENLKKIEGLLAVNI 749
DFP FTRK DS+GS+T NNNL+LAYD+KDL+ EEG E L+KKRT++LKKI GLLA N+
Sbjct: 657 DFPFFTRKLDSYGSATANANNNLTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNL 716
Query: 750 ERKRIRPDLVLKLQIEEKKXXXXXXXXXXXXXXXXXXXEIMAMPDRPYRKFVRLCERQRM 809
ERKRIRPDLVL+LQIEEKK EIM+MPDRPYRKFVRLCERQR+
Sbjct: 717 ERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEIMSMPDRPYRKFVRLCERQRL 776
Query: 810 ELARQVQASRRALREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKH 869
E+ RQV A+++A+REKQLK+IF WRKKLLEAHWAIRDARTARNRGVAKYHE+MLREFSK
Sbjct: 777 EMNRQVLANQKAVREKQLKTIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKR 836
Query: 870 KDDDRHKRMEALKNNDVDRYREMLLEQQSSIPGEASERYAVLSSFLSQTEEYLHKLGSKI 929
KDD R+KRMEALKNNDV+RYREMLLEQQ+++PG+A+ERYAVLSSFL+QTE+YLHKLG KI
Sbjct: 837 KDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDAAERYAVLSSFLTQTEDYLHKLGGKI 896
Query: 930 TXXXXXXXXXXXXXXXXXXXRLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVN 989
T RLQGLSEEEVRAAA CA EEV+IRNRF EMNAP+++SSVN
Sbjct: 897 TATKNQQEVEEAANAAAVAARLQGLSEEEVRAAATCAREEVVIRNRFTEMNAPKENSSVN 956
Query: 990 KYYNLAHAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
KYY LAHAVNEVV+RQPS+L+AGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV
Sbjct: 957 KYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1016
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 25/216 (11%)
Query: 835 KKLLEAHWAIRDAR-TARNRGVAKYHERMLREFSKHKDDDRHKRMEALKNNDVDRYREML 893
K+ LE + +R R NR ++H+R R + D + +++ LK NDV+ Y M+
Sbjct: 598 KEKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMV 657
Query: 894 LEQQSSIPGEASERYAVLSSFLSQTEEYLHKLGSKITXXXXXXXXXXXXXXXXXXXRLQG 953
+ +S +R + L +TE+YL KLGSK+ R +
Sbjct: 658 QDAKS-------DR---VKQLLKETEKYLQKLGSKL------------KEAKLLTSRFEN 695
Query: 954 LSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEVVIRQPSLLRAGT 1013
++E R + A +E +I N A S KYY +AH++ E + QPS L G
Sbjct: 696 EADE-TRTSNA-TDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQPSSLVGGK 753
Query: 1014 LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
LR+YQ+ GL+W++SLYNN LNGILADEMGLGKTVQV
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQV 789
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 112/216 (51%), Gaps = 25/216 (11%)
Query: 835 KKLLEAHWAIRDAR-TARNRGVAKYHERMLREFSKHKDDDRHKRMEALKNNDVDRYREML 893
K+ LE + +R R NR ++H+R R + D + +++ LK NDV+ Y M+
Sbjct: 598 KEKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMV 657
Query: 894 LEQQSSIPGEASERYAVLSSFLSQTEEYLHKLGSKITXXXXXXXXXXXXXXXXXXXRLQG 953
+ +S + L +TE+YL KLGSK+ R +
Sbjct: 658 QDAKSD----------RVKQLLKETEKYLQKLGSKL------------KEAKLLTSRFEN 695
Query: 954 LSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEVVIRQPSLLRAGT 1013
++E R + A +E +I N A S KYY +AH++ E + QPS L G
Sbjct: 696 EADE-TRTSNA-TDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQPSSLVGGK 753
Query: 1014 LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
LR+YQ+ GL+W++SLYNN LNGILADEMGLGKTVQV
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQV 789
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 25/216 (11%)
Query: 835 KKLLEAHWAIRDAR-TARNRGVAKYHERMLREFSKHKDDDRHKRMEALKNNDVDRYREML 893
K+ LE + +R R NR ++H+R R + D + +++ LK NDV+ Y M+
Sbjct: 598 KEKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMV 657
Query: 894 LEQQSSIPGEASERYAVLSSFLSQTEEYLHKLGSKITXXXXXXXXXXXXXXXXXXXRLQG 953
+ +S +R + L +TE+YL KLGSK+ R +
Sbjct: 658 QDAKS-------DR---VKQLLKETEKYLQKLGSKL------------KEAKLLTSRFEN 695
Query: 954 LSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEVVIRQPSLLRAGT 1013
++E R + A +E +I N A S KYY +AH++ E + QPS L G
Sbjct: 696 EADE-TRTSNA-TDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQPSSLVGGK 753
Query: 1014 LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
LR+YQ+ GL+W++SLYNN LNGILADEMGLGKTVQV
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQV 789
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 992 YNLA-HAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
+NLA H++ E V +QPSLL+ G LR YQL GLQWM+SLYNN NGILADEMGLGKT+Q
Sbjct: 363 FNLAIHSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQT 421
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 992 YNLA-HAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
YN A H++ E V QPSLL G LR YQL GLQWM+SL+NN LNGILADEMGLGKT+Q
Sbjct: 380 YNSAIHSIQEKVTEQPSLLEGGELRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTIQT 438
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 994 LAHAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
L + N ++ QPS ++ G +RDYQL GL W++ LY N +NGILADEMGLGKT+Q
Sbjct: 170 LTGSGNTRLLTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT 224
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 994 LAHAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
L + N ++ QPS ++ G +RDYQL GL W++ LY N +NGILADEMGLGKT+Q
Sbjct: 170 LTGSGNTRLLTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT 224
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 994 LAHAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
L + N ++ QPS ++ G +RDYQL GL W++ LY N +NGILADEMGLGKT+Q
Sbjct: 170 LTGSGNTRLLTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT 224
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 1002 VIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
++ QP+ ++ G LRDYQL GL W++ LY N +NGILADEMGLGKT+Q
Sbjct: 183 LLTQPACIQ-GKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT 229
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 1002 VIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQV 1049
++ QP+ ++ G LRDYQL GL W++ LY N +NGILADEMGLGKT+Q
Sbjct: 183 LLTQPACIQ-GKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT 229
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 16/110 (14%)
Query: 954 LSEEEVRAAAACAGEEVMIRNRF----------LEMNAPRDSSSVNKYYNL-AHAVNEV- 1001
L E+ +RAA ++ I + F EM P + SV+ N+ H + +
Sbjct: 512 LKEKVLRAAQDAVSKQKQITDAFDTEYMKLRQTSEMEGPLNDISVSGSSNIDLHNPSTMP 571
Query: 1002 ---VIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQ 1048
++ P L + GTL++YQ+ GLQW+++ Y LNGILADEMGLGKT+Q
Sbjct: 572 VTSTVQTPELFK-GTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQ 620
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 16/110 (14%)
Query: 954 LSEEEVRAAAACAGEEVMIRNRF----------LEMNAPRDSSSVNKYYNL-AHAVNEV- 1001
L E+ +RAA ++ I + F EM P + SV+ N+ H + +
Sbjct: 512 LKEKVLRAAQDAVSKQKQITDAFDTEYMKLRQTSEMEGPLNDISVSGSSNIDLHNPSTMP 571
Query: 1002 ---VIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQ 1048
++ P L + GTL++YQ+ GLQW+++ Y LNGILADEMGLGKT+Q
Sbjct: 572 VTSTVQTPELFK-GTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQ 620
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 994 LAHAVNEVVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTV 1047
++ +V + P LL+ +LR+YQ +GL W++++Y KLNGILADEMGLGKT+
Sbjct: 517 FTYSTTKVRTKLPFLLK-HSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTI 569
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 |
chromatin remodeling 1 | chr5:26649050-26652869 FORWARD
LENGTH=764
Length = 764
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 1008 LLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQ 1048
LL G L+ YQL G++W++SL+ N LNGILAD+MGLGKT+Q
Sbjct: 196 LLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQ 236
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%)
Query: 1005 QPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQ 1048
QP L GTLRDYQL GL ++++ + N N ILADEMGLGKTVQ
Sbjct: 616 QPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQ 659