Miyakogusa Predicted Gene

Lj3g3v2330880.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2330880.2 Non Chatacterized Hit- tr|B9FAB8|B9FAB8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,27.78,3e-18,coiled-coil,NULL; seg,NULL; OS03G0143700
PROTEIN,NULL; PHOSPHATIDYLINOSITOL
N-ACETYLGLUCOSAMINYLTRAN,CUFF.43925.2
         (388 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01690.1 | Symbols: ATPRD3, PRD3 | putative recombination ini...   209   2e-54

>AT1G01690.1 | Symbols: ATPRD3, PRD3 | putative recombination
           initiation defects 3 | chr1:249242-252221 FORWARD
           LENGTH=449
          Length = 449

 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/401 (39%), Positives = 225/401 (56%), Gaps = 46/401 (11%)

Query: 26  LSNFSQSSLDEAVTTNDQRMGSQEYENSSKKISS-LPRLTYSREESQPPNSRSSGNLMVK 84
            S  +QSS+DE +  NDQR  SQE + S KK+SS LP + + RE+SQ   SRSS  L  +
Sbjct: 56  FSQMTQSSIDELLI-NDQRFSSQERDLSLKKVSSCLPPINHKREDSQLVASRSSSGLSRR 114

Query: 85  WNSA---DPKSQLSEGLEHRIGMMETSLSRFAMILDSVQSDVMQVNKGTKEMILDMDYIR 141
           W+SA   + KSQ+SE LE R GMMETSLSRF M+LDS+QSD+MQ N+GTKE+ L+ + I+
Sbjct: 115 WSSASIGESKSQISEELEQRFGMMETSLSRFGMMLDSIQSDIMQANRGTKEVFLETERIQ 174

Query: 142 QKLIAQDNSLQLMTKGQEDIKARIDGSLKSVTEQLSQVTNNEKLQEVYLMVSAFPQLFEA 201
           QKL  QD SLQ + K Q D KA +DG +K + E+ S+  N EKLQ++  M++  P+  E 
Sbjct: 175 QKLTLQDTSLQQLRKEQADSKASLDGGVKFILEEFSKDPNQEKLQKILQMLTTIPEQVET 234

Query: 202 SLRNVQTYL-HNTTKEMQEISCSLKNLNPK-------------NLAQPILSSKEISGSLK 247
           +L+ +Q  + H  T+E+Q ++ SL+   P+             NL +    + ++  SLK
Sbjct: 235 ALQKIQREICHTFTREIQVLA-SLRTPEPRVRVPTAPQVKAKENLPEQRGQAAKVLTSLK 293

Query: 248 NLNPK-----------NLAQ---PILSSKSISKQATPPKMRQPPVSEVKMRTRAAA---A 290
              P+           N  +   P+  S S        K  Q P +      RA     +
Sbjct: 294 MPEPRVQVPAAPQAKENFPEQRGPVAKSNSFCNTTLKTKQPQFPRNPNDASARAVKPYLS 353

Query: 291 PKVKMGGWMSVKKEVT-FSDRISEKVQKKKEPCSEKIVRGGRDCAIVIESDEE--DGAFS 347
           PK+++G W +VK E + F  R + K  K     SE        C++VI+SDEE  DG FS
Sbjct: 354 PKIQVGCWKTVKPEKSNFKKRATRKPVK-----SESTRTQFEQCSVVIDSDEEDIDGGFS 408

Query: 348 CLVEENADLFGNITKEEEEETQRILQKARRRKRKYNNVITI 388
           CL+ EN     N   + E+ET+RIL+ ARR KRK+ N I I
Sbjct: 409 CLINENTR-GTNFEWDAEKETERILRTARRTKRKFGNPIII 448