Miyakogusa Predicted Gene

Lj3g3v2330880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2330880.1 Non Chatacterized Hit- tr|Q10T00|Q10T00_ORYSJ
PAIR1 protein, putative, expressed OS=Oryza sativa
sub,35.48,1e-17,OS03G0143700 PROTEIN,NULL; PHOSPHATIDYLINOSITOL
N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYND,CUFF.43925.1
         (402 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01690.1 | Symbols: ATPRD3, PRD3 | putative recombination ini...   184   1e-46

>AT1G01690.1 | Symbols: ATPRD3, PRD3 | putative recombination
           initiation defects 3 | chr1:249242-252221 FORWARD
           LENGTH=449
          Length = 449

 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/436 (34%), Positives = 209/436 (47%), Gaps = 102/436 (23%)

Query: 26  LSNFSQSSLDEAVTTNDQRMGSQEYENSSKKISS-LPRLTYSREESQ--PPNSRSSGNLM 82
            S  +QSS+DE +  NDQR  SQE + S KK+SS LP + + RE+SQ     S S  +  
Sbjct: 56  FSQMTQSSIDE-LLINDQRFSSQERDLSLKKVSSCLPPINHKREDSQLVASRSSSGLSRR 114

Query: 83  VKWNSADPKTGQLSEGLEHRIGMMETSLSRFAMILDSVQSDVMQVNKGTKEMILDMDYIR 142
               S      Q+SE LE R GMMETSLSRF M+LDS+QSD+MQ N+GTKE+ L+ + I+
Sbjct: 115 WSSASIGESKSQISEELEQRFGMMETSLSRFGMMLDSIQSDIMQANRGTKEVFLETERIQ 174

Query: 143 QKLIAQDNSLQLMTKGQEDIKARIDGSLKSVTEQLSQVTNNEKLQEVYLMVSAFPQLFEA 202
           QKL  QD SLQ + K Q D KA +DG +K + E+ S+  N EKLQ++  M++  P+  E 
Sbjct: 175 QKLTLQDTSLQQLRKEQADSKASLDGGVKFILEEFSKDPNQEKLQKILQMLTTIPEQVET 234

Query: 203 SLRNVQTYL-HNTTKEMQEISCSLKNLNPK-------------NLAQ------------- 235
           +L+ +Q  + H  T+E+Q ++ SL+   P+             NL +             
Sbjct: 235 ALQKIQREICHTFTREIQVLA-SLRTPEPRVRVPTAPQVKAKENLPEQRGQAAKVLTSLK 293

Query: 236 -----------------------PILSSKSISKQATPPKMRQPPVSEVKMRTRAAA---A 269
                                  P+  S S        K  Q P +      RA     +
Sbjct: 294 MPEPRVQVPAAPQAKENFPEQRGPVAKSNSFCNTTLKTKQPQFPRNPNDASARAVKPYLS 353

Query: 270 PKVKMGGWMSVKKEVT-FSDRISEKVQKKKEPCSEKIVRGGRDCAIVIESDEE--DGAFS 326
           PK+++G W +VK E + F  R + K  K     SE        C++VI+SDEE  DG FS
Sbjct: 354 PKIQVGCWKTVKPEKSNFKKRATRKPVK-----SESTRTQFEQCSVVIDSDEEDIDGGFS 408

Query: 327 CLVEENAVPIRRSKRNKQSPSYLEDFQCRLLNSVQSTSFSSSDLFGNITKEEEEETQRIL 386
           CL+ EN                            + T+F           + E+ET+RIL
Sbjct: 409 CLINEN---------------------------TRGTNFEW---------DAEKETERIL 432

Query: 387 QKARRRKRKYNNVITI 402
           + ARR KRK+ N I I
Sbjct: 433 RTARRTKRKFGNPIII 448