Miyakogusa Predicted Gene
- Lj3g3v2330830.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2330830.1 Non Chatacterized Hit- tr|I1KID8|I1KID8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53961
PE,84.96,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
coiled-coil,NULL; PRONE,Plant specific Ro,CUFF.43920.1
(235 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | RHO guanyl-nucleotid... 213 1e-55
AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotid... 211 2e-55
AT4G00460.1 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotid... 211 2e-55
AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotid... 134 4e-32
AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4, RHS11 | RHO guanyl-nu... 132 2e-31
AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-... 132 2e-31
AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleoti... 131 4e-31
AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotid... 130 9e-31
AT3G24620.1 | Symbols: ATROPGEF8, ROPGEF8 | RHO guanyl-nucleotid... 129 2e-30
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-... 127 7e-30
AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotid... 125 2e-29
AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO guanyl-... 120 1e-27
AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants) ... 119 1e-27
AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleot... 108 3e-24
AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROP uanine nucleot... 108 4e-24
>AT1G01700.1 | Symbols: ATROPGEF2, ROPGEF2 | RHO guanyl-nucleotide
exchange factor 2 | chr1:259495-261474 REVERSE
LENGTH=485
Length = 485
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/231 (50%), Positives = 142/231 (61%), Gaps = 6/231 (2%)
Query: 1 MDNSSNFDENSDVGYLPSPSSVDQNDHSITETAGYSPFSVDSFAYYRSNSEVST--LSEP 58
M+N N +EN DVGY SP +D NDHS +ET YS S DSFAY+R+ SE S S+
Sbjct: 1 MENLPNHEENDDVGYHQSPGPIDPNDHSASETPVYSTMSTDSFAYHRTCSETSGGGFSDQ 60
Query: 59 IDDNSS-ASEPSPSPWISVKHGASQASL---SRLGMKQRKHSXXXXXXXXXXXXXXXXXX 114
ID+ SS +E SPS W + + AS + +K +
Sbjct: 61 IDETSSFCTEASPSDWPVLTESNNSASSNFPTVFDLKHNQIETDEHLAVQEISEPELETM 120
Query: 115 XXRFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMN 174
RF+K+LLGEDMSG GKGV TAVTISN+ITNLYATVFGQN W REMN
Sbjct: 121 KERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTWKREMN 180
Query: 175 CLLSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
CLLSVC+YI EF P +Q L +G VE+M SRPR+DIY+NLPAL+KLD+ML+
Sbjct: 181 CLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLM 231
>AT4G00460.2 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotide
exchange factor 3 | chr4:211146-213094 REVERSE
LENGTH=473
Length = 473
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 141/227 (62%), Gaps = 10/227 (4%)
Query: 1 MDNSSNFDENSDVGYLPSPSSVDQNDHSITETAGYSPFSVDSFAYYRSNSEVST-LSEPI 59
M+N SN DEN D SP S+DQND S ET YS S+DSF Y R+ SE ++ S+ I
Sbjct: 1 MENLSNPDENDD---HQSPRSIDQNDQSAVETPVYSTMSIDSFVYPRTCSETTSGFSDQI 57
Query: 60 DD-NSSASEPSPSPWISVKHGASQASLSRLGMKQRKHSXXXXXXXXXXXXXXXXXXXXRF 118
D+ NS SE SP W + S LS L M+ + RF
Sbjct: 58 DETNSFCSEASPCNWPVLTESKSSKCLSGLEMQSNE-----CLVVQEISEPELETMKERF 112
Query: 119 AKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCLLS 178
AK+LLGEDMSG GKGV TAVTISN+ITNLYATVFGQN A+W REMNCLLS
Sbjct: 113 AKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRALWKREMNCLLS 172
Query: 179 VCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
VC+YIVEF P Q L +G VE+M SRPR+DIY+NLPAL+KLD+ML+
Sbjct: 173 VCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLM 219
>AT4G00460.1 | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotide
exchange factor 3 | chr4:211731-213094 REVERSE
LENGTH=337
Length = 337
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 141/227 (62%), Gaps = 10/227 (4%)
Query: 1 MDNSSNFDENSDVGYLPSPSSVDQNDHSITETAGYSPFSVDSFAYYRSNSEVST-LSEPI 59
M+N SN DEN D SP S+DQND S ET YS S+DSF Y R+ SE ++ S+ I
Sbjct: 1 MENLSNPDENDDHQ---SPRSIDQNDQSAVETPVYSTMSIDSFVYPRTCSETTSGFSDQI 57
Query: 60 DD-NSSASEPSPSPWISVKHGASQASLSRLGMKQRKHSXXXXXXXXXXXXXXXXXXXXRF 118
D+ NS SE SP W + S LS L M+ + RF
Sbjct: 58 DETNSFCSEASPCNWPVLTESKSSKCLSGLEMQSNE-----CLVVQEISEPELETMKERF 112
Query: 119 AKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCLLS 178
AK+LLGEDMSG GKGV TAVTISN+ITNLYATVFGQN A+W REMNCLLS
Sbjct: 113 AKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRALWKREMNCLLS 172
Query: 179 VCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
VC+YIVEF P Q L +G VE+M SRPR+DIY+NLPAL+KLD+ML+
Sbjct: 173 VCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLM 219
>AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide
exchange factor 7 | chr5:383493-385698 FORWARD
LENGTH=546
Length = 546
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 77/109 (70%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
RF+K+LLGEDMSG G GV TA+ ISN+ITNL AT+FGQ MW REM L
Sbjct: 77 RFSKLLLGEDMSGSGNGVCTALAISNAITNLCATLFGQLWRLEPLPTEKKEMWRREMEWL 136
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
L V ++IVE PT Q DGT +E+MT RPRSD+YVNLPAL+KLD ML+
Sbjct: 137 LCVSDHIVEMTPTWQTFPDGTKLEIMTCRPRSDLYVNLPALRKLDNMLL 185
>AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4, RHS11 | RHO
guanyl-nucleotide exchange factor 4 |
chr2:18883540-18885440 FORWARD LENGTH=463
Length = 463
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 118/226 (52%), Gaps = 23/226 (10%)
Query: 1 MDNSSNFDENSDVGYLPSPSSVDQNDHSITETAGYS-PFSVDSFAYYRSNSEVSTLSEPI 59
M++SSN D+N P+ S + ++ +G S F V SF SN+ LS
Sbjct: 1 MESSSNSDQNEGT---PTSSVSSPYRRTYSDISGLSHRFDVQSFYNRPSNTNAVVLSGHE 57
Query: 60 DDNSSASEPSPSPWISVKHGASQASLSRLGMKQRKHSXXXXXXXXXXXXXXXXXXXXRFA 119
+D S +E ++ HG S + + RFA
Sbjct: 58 EDVSEDAEEPKDDVVNDVHGDGDEEDSDIDSAE---------------DAELEMMRERFA 102
Query: 120 KILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCLLSV 179
K+LLGEDMSG GKGV TAVT+SNSITNLYATVFGQ+ +W REMNC +S+
Sbjct: 103 KLLLGEDMSGSGKGVCTAVTVSNSITNLYATVFGQSLRLQPLSTEKKDLWKREMNCFMSI 162
Query: 180 CEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
C+YIVE P + GT VE+ ++ RSDI ++LPAL+KLD ML+
Sbjct: 163 CDYIVEVIPRSL----GTNVEITETKLRSDILMSLPALRKLDNMLM 204
>AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO
guanyl-nucleotide exchange factor 12 |
chr1:30042172-30044092 REVERSE LENGTH=515
Length = 515
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 84/109 (77%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
RF+K+LLGED SGGGKGVS+A+ +SN+ITNL A+VFG+ A W +E++ L
Sbjct: 99 RFSKLLLGEDNSGGGKGVSSALALSNAITNLAASVFGEQRRLEPMPAERRARWRKEIDWL 158
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
LSV +Y+VEFAP+ Q +DGT +E+MT+R R+D+++N+PAL+KLD MLI
Sbjct: 159 LSVTDYVVEFAPSQQKNKDGTNMEIMTTRQRTDLHMNIPALKKLDAMLI 207
>AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleotide
exchange factor 5 | chr5:1786028-1788363 FORWARD
LENGTH=611
Length = 611
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 76/109 (69%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
RFAK+LLGEDMSG GKGV TA+ ISN+ITNL AT+FGQ MW REM +
Sbjct: 109 RFAKLLLGEDMSGSGKGVCTALAISNAITNLCATIFGQLWRLEPLSSEKKEMWRREMEWI 168
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
LSV ++IVE P+ Q DG E+MT RPR D+++NLPAL+KLD ML+
Sbjct: 169 LSVSDHIVELTPSTQTYPDGNKFEVMTCRPRFDLFINLPALRKLDNMLL 217
>AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide
exchange factor 1 | chr4:17986643-17988659 FORWARD
LENGTH=548
Length = 548
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 75/109 (68%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
RFAK+LLGEDMSGGGKGV TA+ ISN+ITNL ATVFG+ AMW RE+ L
Sbjct: 97 RFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWL 156
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
L V + IVE P+ Q G E+M +RPRSD+Y NLPAL+KLD MLI
Sbjct: 157 LCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKLDAMLI 205
>AT3G24620.1 | Symbols: ATROPGEF8, ROPGEF8 | RHO guanyl-nucleotide
exchange factor 8 | chr3:8980695-8982793 REVERSE
LENGTH=523
Length = 523
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
RFAK+LLGEDMSGGGKGVS+A+ +SN+ITNL A++FG+ A W +E++ L
Sbjct: 92 RFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWL 151
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
LSV ++IVEF P+ Q +DG E+M +R R D+ +N+PAL+KLD MLI
Sbjct: 152 LSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLI 200
>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
guanyl-nucleotide exchange factor 11 |
chr1:19455766-19459235 REVERSE LENGTH=607
Length = 607
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
+F+K+LLGEDMSGGGKGVS+A+ +SN+ITNL A+ FG+ W RE+ L
Sbjct: 175 KFSKLLLGEDMSGGGKGVSSALALSNAITNLAASAFGEQRRLEPMAVDRKTRWRREIGWL 234
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI----------- 225
+SV +YIVEFAPT Q +DGT +E+M++R R+D+ N+PAL+KLD ML+
Sbjct: 235 ISVADYIVEFAPTQQTNKDGTSMEVMSTRQRTDLLCNIPALKKLDAMLLDCLDKFKDQDE 294
Query: 226 ---VRESSMDSC 234
V++ S DSC
Sbjct: 295 FYYVKKDSPDSC 306
>AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotide
exchange factor 9 | chr4:7680153-7682414 FORWARD
LENGTH=517
Length = 517
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 78/109 (71%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
RF K+LLGEDMSGGGKGVS+A+ +SN+ITNL A++FG+ A W +E++ L
Sbjct: 81 RFTKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMAPDRRARWKKEIDWL 140
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
LSV ++IVEF P+ Q ++G E+M +R R D+ +N+PAL+KLD MLI
Sbjct: 141 LSVTDHIVEFVPSQQISKEGVCTEIMVTRQRGDLLMNIPALRKLDAMLI 189
>AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO
guanyl-nucleotide exchange factor 13 |
chr3:5466246-5468512 FORWARD LENGTH=576
Length = 576
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 79/109 (72%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
+FAK+LLGEDMSGG KGVS+A+ +SN+ITNL A+ FG+ W RE+ L
Sbjct: 135 KFAKLLLGEDMSGGSKGVSSALALSNAITNLAASAFGEIRRLEAISEDKKERWRREIGWL 194
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
LSV ++IVEF+PT Q EDG+ +E+MT++ R+D+ N+P+L+KLD ML+
Sbjct: 195 LSVTDHIVEFSPTHQTNEDGSSMEVMTTKQRTDLVSNIPSLKKLDEMLL 243
>AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants)
guanine nucleotide exchange factor 6 |
chr3:20649051-20651290 REVERSE LENGTH=579
Length = 579
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 72/109 (66%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
R AK+LLGEDMSG G+GV A+ ISN+ITNLYA + GQ MW RE+ L
Sbjct: 114 RMAKLLLGEDMSGSGEGVCPALAISNAITNLYAAILGQQWRLEPIPSEKKLMWRREIEVL 173
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
LSV ++IVE P+ Q +G +E+M RPRSD++ LPAL+KLD MLI
Sbjct: 174 LSVSDHIVELVPSFQNFPNGNKIEVMNCRPRSDLFTCLPALRKLDNMLI 222
>AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide
exchange factor 14 | chr1:11326474-11329767 REVERSE
LENGTH=576
Length = 576
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 76/115 (66%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
+F+K+LLGED++GG KGV A+ +SN++T+L ++FG+ W REM+ L
Sbjct: 143 KFSKLLLGEDVTGGCKGVQVALALSNAVTHLATSIFGELWKLEPLCEEKKQKWRREMDWL 202
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLIVRESSM 231
LS Y++E P+ Q +G +E+MT + R+DI++NLPALQKLD+MLI SM
Sbjct: 203 LSPTNYMIELVPSKQNDANGRSLEIMTPKARADIHMNLPALQKLDSMLIETLDSM 257
>AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROP uanine nucleotide
exchange factor 10 | chr5:6603291-6606130 FORWARD
LENGTH=493
Length = 493
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 117 RFAKILLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNXXXXXXXXXXXAMWIREMNCL 176
RFAK+LLGEDMSGGG G ++A+ +SN+IT L ++FG+ W +EM L
Sbjct: 51 RFAKLLLGEDMSGGGTGETSALALSNAITKLADSMFGEQMKLQPMYPETKENWRKEMGWL 110
Query: 177 LSVCEYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLI 225
LSV ++IV+F P+ Q ++G E+M ++ R D+ N+PAL+KLD++L+
Sbjct: 111 LSVIDHIVQFVPSRQMGKNGQFTEIMVTKQRDDLLTNIPALRKLDSVLL 159