Miyakogusa Predicted Gene

Lj3g3v2320530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2320530.1 Non Chatacterized Hit- tr|I1KUZ9|I1KUZ9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3148
PE=,89.82,0,seg,NULL; Med6,Mediator complex, subunit Med6;
MED-6-RELATED,Mediator complex, subunit Med6,CUFF.43930.1
         (244 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21350.1 | Symbols: MED6 | RNA polymerase transcriptional reg...   295   1e-80
AT3G21350.2 | Symbols: MED6 | RNA polymerase transcriptional reg...   280   8e-76

>AT3G21350.1 | Symbols: MED6 | RNA polymerase transcriptional
           regulation mediator-related | chr3:7517106-7518587
           FORWARD LENGTH=257
          Length = 257

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/235 (63%), Positives = 171/235 (72%), Gaps = 5/235 (2%)

Query: 11  VAPP-QPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSLHPL 69
           + PP QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RS+HPL
Sbjct: 22  IPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPL 81

Query: 70  DLSQLTKMTGTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVF 129
           DLS L+KMTG E++L++  EP+LF+ RKQKRD P+KVTPML YYILDGSIYQAPQLC+VF
Sbjct: 82  DLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVF 141

Query: 130 AARIGRALYYIEKAFTTAASKLEKIGYAGPVDSETETASLESKVAKETIDLKEVKRVDHI 189
           AAR+ R +Y I KAFT AASKLE I     VD+E +    ESK A ET+DLKE+KRVD I
Sbjct: 142 AARVSRTIYNISKAFTDAASKLETIRQ---VDTENQNEPAESKPASETVDLKEMKRVDVI 198

Query: 190 LASLQRKLXXXXXXXXXXXXXXXXSTAETEKGTETQESAEPQAPQVDPIIDQGPA 244
           L SL RKL                  A  EK     +  E Q PQVDPIIDQGPA
Sbjct: 199 LTSLYRKLAPPPPPPPFPEGYVSQE-ALGEKEELGTQGGESQPPQVDPIIDQGPA 252


>AT3G21350.2 | Symbols: MED6 | RNA polymerase transcriptional
           regulation mediator-related | chr3:7517106-7518587
           FORWARD LENGTH=298
          Length = 298

 Score =  280 bits (715), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 149/270 (55%), Positives = 171/270 (63%), Gaps = 39/270 (14%)

Query: 13  PPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSLHPLDLS 72
           P QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RS+HPLDLS
Sbjct: 25  PLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHPLDLS 84

Query: 73  QLTKMTGTEFVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVFAAR 132
            L+KMTG E++L++  EP+LF+ RKQKRD P+KVTPML YYILDGSIYQAPQLC+VFAAR
Sbjct: 85  HLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAAR 144

Query: 133 IGRALYYIEKAFTTAASKLEKI-------------------------------------G 155
           + R +Y I KAFT AASKLE I                                     G
Sbjct: 145 VSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGEQVYG 204

Query: 156 YAGPV-DSETETASLESKVAKETIDLKEVKRVDHILASLQRKLXXXXXXXXXXXXXXXXS 214
           +   + D+E +    ESK A ET+DLKE+KRVD IL SL RKL                 
Sbjct: 205 FNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGYVSQE 264

Query: 215 TAETEKGTETQESAEPQAPQVDPIIDQGPA 244
            A  EK     +  E Q PQVDPIIDQGPA
Sbjct: 265 -ALGEKEELGTQGGESQPPQVDPIIDQGPA 293