Miyakogusa Predicted Gene

Lj3g3v2318240.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2318240.2 Non Chatacterized Hit- tr|I1KV14|I1KV14_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,75.95,0,PAP_central,Poly(A) polymerase, central domain;
PAP_RNA-bind,Poly(A) polymerase, RNA-binding domain;,CUFF.43876.2
         (700 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase | chr4...   835   0.0  
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   834   0.0  
AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   830   0.0  
AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   830   0.0  
AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymeras...   830   0.0  
AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   829   0.0  
AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   829   0.0  
AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   828   0.0  
AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   827   0.0  
AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   827   0.0  
AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   820   0.0  
AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   820   0.0  
AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   820   0.0  
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   820   0.0  
AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   683   0.0  
AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   532   e-151
AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:20444...   282   7e-76

>AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854266 FORWARD LENGTH=745
          Length = 745

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/745 (59%), Positives = 528/745 (70%), Gaps = 53/745 (7%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPV-KNTVPSGNGALQD-TPNA 673
             ++ SVS++G             N  +EG  F      P+ K  + S +G  +D   N+
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGFPAANSDPMGKKNLYSQSGMSEDLQSNS 715

Query: 674 VLGTILDSNGGVHSEVVQNPMIRHV 698
           ++  +  S     SE  Q   IRHV
Sbjct: 716 LVSGMEKSEDRARSESFQKSQIRHV 740


>AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854443 FORWARD LENGTH=765
          Length = 765

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/746 (59%), Positives = 528/746 (70%), Gaps = 53/746 (7%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPV-KNTVPSGNGALQD-TPNA 673
             ++ SVS++G             N  +EG  F      P+ K  + S +G  +D   N+
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGFPAANSDPMGKKNLYSQSGMSEDLQSNS 715

Query: 674 VLGTILDSNGGVHSEVVQNPMIRHVL 699
           ++  +  S     SE  Q   IRH +
Sbjct: 716 LVSGMEKSEDRARSESFQKSQIRHAI 741


>AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/746 (59%), Positives = 527/746 (70%), Gaps = 53/746 (7%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPV-KNTVPSGNGALQD-TPNA 673
             ++ SVS++G             N  +EG  F      P+ K  + S +G  +D   N+
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGFPAANSDPMGKKNLYSQSGMSEDLQSNS 715

Query: 674 VLGTILDSNGGVHSEVVQNPMIRHVL 699
           ++  +  S     SE  Q   IR  L
Sbjct: 716 LVSGMEKSEDRARSESFQKSQIRLSL 741


>AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/746 (59%), Positives = 527/746 (70%), Gaps = 53/746 (7%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPV-KNTVPSGNGALQD-TPNA 673
             ++ SVS++G             N  +EG  F      P+ K  + S +G  +D   N+
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGFPAANSDPMGKKNLYSQSGMSEDLQSNS 715

Query: 674 VLGTILDSNGGVHSEVVQNPMIRHVL 699
           ++  +  S     SE  Q   IR  L
Sbjct: 716 LVSGMEKSEDRARSESFQKSQIRLSL 741


>AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymerase |
           chr4:15850134-15854375 FORWARD LENGTH=741
          Length = 741

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/743 (59%), Positives = 526/743 (70%), Gaps = 53/743 (7%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPV-KNTVPSGNGALQD-TPNA 673
             ++ SVS++G             N  +EG  F      P+ K  + S +G  +D   N+
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGFPAANSDPMGKKNLYSQSGMSEDLQSNS 715

Query: 674 VLGTILDSNGGVHSEVVQNPMIR 696
           ++  +  S     SE  Q   IR
Sbjct: 716 LVSGMEKSEDRARSESFQKSQIR 738


>AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/712 (60%), Positives = 512/712 (71%), Gaps = 57/712 (8%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPVKNTVPSGNGAL 667
             ++ SVS++G             N  +EG  F      P  N+ P G   L
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGF------PAANSDPMGKKNL 701


>AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/712 (60%), Positives = 512/712 (71%), Gaps = 57/712 (8%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPVKNTVPSGNGAL 667
             ++ SVS++G             N  +EG  F      P  N+ P G   L
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGF------PAANSDPMGKKNL 701


>AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=735
          Length = 735

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/712 (60%), Positives = 512/712 (71%), Gaps = 57/712 (8%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPVKNTVPSGNGAL 667
             ++ SVS++G             N  +EG  F      P  N+ P G   L
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGF------PAANSDPMGKKNL 701


>AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853906 FORWARD LENGTH=716
          Length = 716

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/712 (60%), Positives = 512/712 (71%), Gaps = 57/712 (8%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S        + ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDS----VDVVACVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPVKNTVPSGNGAL 667
             ++ SVS++G             N  +EG  F      P  N+ P G   L
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGF------PAANSDPMGKKNL 701


>AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853810 FORWARD LENGTH=730
          Length = 730

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/712 (60%), Positives = 512/712 (71%), Gaps = 57/712 (8%)

Query: 1   MVNSEGLGGS------AKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASK 54
           MV ++ LGGS       K YG+TKP+S+AGP+ +D++R +ELEK++VD GLYES+++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 55  REEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIG 114
           REEVL R+ Q+VK WVKQLT+ RGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC+G
Sbjct: 62  REEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVG 121

Query: 115 PSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVP 174
           PSY+NR++DFF  LHDILA MEEVTEL P+PDAHVPVMKFKF GI IDLLYAS+S L+VP
Sbjct: 122 PSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVP 181

Query: 175 EDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSN 234
           +DLDIS  SVL  VDE TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSN
Sbjct: 182 QDLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSN 241

Query: 235 VTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSV 294
           VTGFLGGVN ALLVARVCQLYPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE+ELGF V
Sbjct: 242 VTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPV 301

Query: 295 WDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWS 354
           WD R+N RDR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN I  EIELNK  WS
Sbjct: 302 WDRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWS 361

Query: 355 ALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNP 414
           +LFE Y+FFE+Y+NYLQVDI+AAD +DL +WKGWVESR RQLTL IERDT G L CHP P
Sbjct: 362 SLFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQP 421

Query: 415 HEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYV 474
           +EYVDT++Q  HC+FFMGLQR +G   QE QQFDIRGTV+EFR  VNMY FWKPGMD++V
Sbjct: 422 NEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFV 481

Query: 475 SHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEH-SERNHKRKYDK-- 531
           SHVRRRQ+P +VFP+GY+RPR  +   Q     KS  +  VS S    ER+ KRK D   
Sbjct: 482 SHVRRRQLPPFVFPNGYRRPRQSR--HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEM 539

Query: 532 AGVKQDGILKKHSTS-------------------PPVNSLSRP--------NL---CQGL 561
             V+ +   K+ S S                   PPV +L RP        NL   C  L
Sbjct: 540 MDVRPEKPEKRASLSPQSLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLNTECTEL 599

Query: 562 GDLSVDAV-SHSPELRNVESLS-----NSGQDDLGRTVSPESEPECASNSSVITSSDGGF 615
            DL+ +   S S ++  V+S++     +   + LG+ V+P+S    A     ++  +   
Sbjct: 600 TDLARNECNSGSEQVLEVDSMAVVQECSDPAEPLGKCVTPDSVDVVA----CVSGQEENL 655

Query: 616 SEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPVKNTVPSGNGAL 667
             ++ SVS++G             N  +EG  F      P  N+ P G   L
Sbjct: 656 DRNLRSVSISGTDSPLLPSRSCGQNRDYEGFGF------PAANSDPMGKKNL 701


>AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=797
          Length = 797

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/528 (73%), Positives = 443/528 (83%), Gaps = 2/528 (0%)

Query: 3   NSEGLGGSAKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASKREEVLHRL 62
           +S+ +  S K YG+T+P+S+AGP+ +D++R LELEKF+VD GLYES+EE  +REEV+ R+
Sbjct: 12  SSQPVKASLKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRI 71

Query: 63  GQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDD 122
            Q+VK WVKQLTR RGYTDQMVEDANAVIFTFGSYRLGVHGP ADIDTLC+GPSY+NR++
Sbjct: 72  DQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVGPSYVNREE 131

Query: 123 DFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVPEDLDISDV 182
           DFF    DILA MEEVTELQP+ DAHVPVMKFKF GISIDLLYAS+S L++P+DLDIS+ 
Sbjct: 132 DFFIFFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNS 191

Query: 183 SVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGV 242
           SVL +VDE+TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSNVTGFLGGV
Sbjct: 192 SVLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGV 251

Query: 243 NLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPR 302
           N ALLVAR+CQ YPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE++L F VWDPR+N R
Sbjct: 252 NWALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHR 311

Query: 303 DRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWSALFEPYIF 362
           DR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN IC EIELNK  WS+LF+ Y+F
Sbjct: 312 DRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMF 371

Query: 363 FESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSK 422
           FE+Y+NYLQVD++AAD +DL +WKGWVESR RQLTL IERDT G L CHP P+EYVDTSK
Sbjct: 372 FEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSK 431

Query: 423 QCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQI 482
           Q  HC+FFMGLQR  G   QE QQFDIRGTV+EFR  VNMY FW+PGMD++VSHVRRRQ+
Sbjct: 432 QFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQL 491

Query: 483 PCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEHSERNHKRKYD 530
           P +VFP+GYKR R  +  SQ    P    E   S S+  ER  KRK D
Sbjct: 492 PSFVFPNGYKRSRQSRHQSQQCREP--GDEGVGSLSDSVERYAKRKND 537


>AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=787
          Length = 787

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/528 (73%), Positives = 443/528 (83%), Gaps = 2/528 (0%)

Query: 3   NSEGLGGSAKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASKREEVLHRL 62
           +S+ +  S K YG+T+P+S+AGP+ +D++R LELEKF+VD GLYES+EE  +REEV+ R+
Sbjct: 12  SSQPVKASLKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRI 71

Query: 63  GQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDD 122
            Q+VK WVKQLTR RGYTDQMVEDANAVIFTFGSYRLGVHGP ADIDTLC+GPSY+NR++
Sbjct: 72  DQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVGPSYVNREE 131

Query: 123 DFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVPEDLDISDV 182
           DFF    DILA MEEVTELQP+ DAHVPVMKFKF GISIDLLYAS+S L++P+DLDIS+ 
Sbjct: 132 DFFIFFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNS 191

Query: 183 SVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGV 242
           SVL +VDE+TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSNVTGFLGGV
Sbjct: 192 SVLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGV 251

Query: 243 NLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPR 302
           N ALLVAR+CQ YPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE++L F VWDPR+N R
Sbjct: 252 NWALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHR 311

Query: 303 DRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWSALFEPYIF 362
           DR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN IC EIELNK  WS+LF+ Y+F
Sbjct: 312 DRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMF 371

Query: 363 FESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSK 422
           FE+Y+NYLQVD++AAD +DL +WKGWVESR RQLTL IERDT G L CHP P+EYVDTSK
Sbjct: 372 FEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSK 431

Query: 423 QCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQI 482
           Q  HC+FFMGLQR  G   QE QQFDIRGTV+EFR  VNMY FW+PGMD++VSHVRRRQ+
Sbjct: 432 QFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQL 491

Query: 483 PCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEHSERNHKRKYD 530
           P +VFP+GYKR R  +  SQ    P    E   S S+  ER  KRK D
Sbjct: 492 PSFVFPNGYKRSRQSRHQSQQCREP--GDEGVGSLSDSVERYAKRKND 537


>AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=786
          Length = 786

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/528 (73%), Positives = 443/528 (83%), Gaps = 2/528 (0%)

Query: 3   NSEGLGGSAKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASKREEVLHRL 62
           +S+ +  S K YG+T+P+S+AGP+ +D++R LELEKF+VD GLYES+EE  +REEV+ R+
Sbjct: 12  SSQPVKASLKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRI 71

Query: 63  GQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDD 122
            Q+VK WVKQLTR RGYTDQMVEDANAVIFTFGSYRLGVHGP ADIDTLC+GPSY+NR++
Sbjct: 72  DQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVGPSYVNREE 131

Query: 123 DFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVPEDLDISDV 182
           DFF    DILA MEEVTELQP+ DAHVPVMKFKF GISIDLLYAS+S L++P+DLDIS+ 
Sbjct: 132 DFFIFFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNS 191

Query: 183 SVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGV 242
           SVL +VDE+TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSNVTGFLGGV
Sbjct: 192 SVLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGV 251

Query: 243 NLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPR 302
           N ALLVAR+CQ YPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE++L F VWDPR+N R
Sbjct: 252 NWALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHR 311

Query: 303 DRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWSALFEPYIF 362
           DR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN IC EIELNK  WS+LF+ Y+F
Sbjct: 312 DRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMF 371

Query: 363 FESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSK 422
           FE+Y+NYLQVD++AAD +DL +WKGWVESR RQLTL IERDT G L CHP P+EYVDTSK
Sbjct: 372 FEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSK 431

Query: 423 QCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQI 482
           Q  HC+FFMGLQR  G   QE QQFDIRGTV+EFR  VNMY FW+PGMD++VSHVRRRQ+
Sbjct: 432 QFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQL 491

Query: 483 PCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEHSERNHKRKYD 530
           P +VFP+GYKR R  +  SQ    P    E   S S+  ER  KRK D
Sbjct: 492 PSFVFPNGYKRSRQSRHQSQQCREP--GDEGVGSLSDSVERYAKRKND 537


>AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026123-11030440 REVERSE LENGTH=800
          Length = 800

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/528 (73%), Positives = 443/528 (83%), Gaps = 2/528 (0%)

Query: 3   NSEGLGGSAKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASKREEVLHRL 62
           +S+ +  S K YG+T+P+S+AGP+ +D++R LELEKF+VD GLYES+EE  +REEV+ R+
Sbjct: 12  SSQPVKASLKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRI 71

Query: 63  GQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDD 122
            Q+VK WVKQLTR RGYTDQMVEDANAVIFTFGSYRLGVHGP ADIDTLC+GPSY+NR++
Sbjct: 72  DQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVGPSYVNREE 131

Query: 123 DFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVPEDLDISDV 182
           DFF    DILA MEEVTELQP+ DAHVPVMKFKF GISIDLLYAS+S L++P+DLDIS+ 
Sbjct: 132 DFFIFFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNS 191

Query: 183 SVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGV 242
           SVL +VDE+TVRSLNGCRVADQILKLVPN EHFRTTL  LK+WAK+RGVYSNVTGFLGGV
Sbjct: 192 SVLCDVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGV 251

Query: 243 NLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPR 302
           N ALLVAR+CQ YPNA+PSMLVSRFFRVYTQWRWPNPVMLC IEE++L F VWDPR+N R
Sbjct: 252 NWALLVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHR 311

Query: 303 DRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWSALFEPYIF 362
           DR H MPIITPAYPCMNSSYNVS STLRVM EQFQFGN IC EIELNK  WS+LF+ Y+F
Sbjct: 312 DRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMF 371

Query: 363 FESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSK 422
           FE+Y+NYLQVD++AAD +DL +WKGWVESR RQLTL IERDT G L CHP P+EYVDTSK
Sbjct: 372 FEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSK 431

Query: 423 QCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQI 482
           Q  HC+FFMGLQR  G   QE QQFDIRGTV+EFR  VNMY FW+PGMD++VSHVRRRQ+
Sbjct: 432 QFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQL 491

Query: 483 PCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEHSERNHKRKYD 530
           P +VFP+GYKR R  +  SQ    P    E   S S+  ER  KRK D
Sbjct: 492 PSFVFPNGYKRSRQSRHQSQQCREP--GDEGVGSLSDSVERYAKRKND 537


>AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6191418 REVERSE LENGTH=713
          Length = 713

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/483 (64%), Positives = 385/483 (79%), Gaps = 2/483 (0%)

Query: 10  SAKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASKREEVLHRLGQVVKDW 69
           + +++GV++PISM GPT  D+ +T ELEK + D GLYES+EEA +REEVL  L Q+VK W
Sbjct: 7   NGQRFGVSEPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILDQIVKTW 66

Query: 70  VKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDDDFFYTLH 129
           +K ++R +G  DQ++ +ANA IFTFGSYRLGVHGPGADIDTLC+GP +  R+ DFF  L 
Sbjct: 67  IKTISRAKGLNDQLLHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREGDFFGELQ 126

Query: 130 DILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVPEDLDISDVSVLHNVD 189
            +L+ M EVTEL P+PDAHVP+M FK +G+SIDLLYA +   ++PEDLD+S  S+L N D
Sbjct: 127 RMLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNAD 186

Query: 190 ERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGVNLALLVA 249
           E+TVRSLNGCRV DQIL+LVPN+++FRTTL  ++FWAKRRGVYSNV+GFLGG+N ALLVA
Sbjct: 187 EQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVA 246

Query: 250 RVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMP 309
           R+CQLYPNA+P++LVSRFFRV+ QW WPN + LC  +E  LG  VWDPR NP+DR H MP
Sbjct: 247 RICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMP 306

Query: 310 IITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWSALFEPYIFFESYRNY 369
           IITPAYPCMNSSYNVS STLR+M  +FQ GN IC  +E NK  W  LFEP+ FFE+Y+NY
Sbjct: 307 IITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNY 366

Query: 370 LQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSKQCAHCSF 429
           LQ+DI AA+VDDLR WKGWVESRLRQLTL IER  F  L CHP+PH++ DTS+   HCS+
Sbjct: 367 LQIDISAANVDDLRKWKGWVESRLRQLTLKIERH-FKMLHCHPHPHDFQDTSRPL-HCSY 424

Query: 430 FMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQIPCYVFPD 489
           FMGLQRKQG    EG+QFDIR TVEEF+H+VN Y  W PGM++ V H++RR +P +VFP 
Sbjct: 425 FMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFPG 484

Query: 490 GYK 492
           G +
Sbjct: 485 GVR 487


>AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6190318 REVERSE LENGTH=586
          Length = 586

 Score =  532 bits (1370), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 241/362 (66%), Positives = 292/362 (80%), Gaps = 2/362 (0%)

Query: 131 ILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVPEDLDISDVSVLHNVDE 190
           +L+ M EVTEL P+PDAHVP+M FK +G+SIDLLYA +   ++PEDLD+S  S+L N DE
Sbjct: 1   MLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADE 60

Query: 191 RTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGVNLALLVAR 250
           +TVRSLNGCRV DQIL+LVPN+++FRTTL  ++FWAKRRGVYSNV+GFLGG+N ALLVAR
Sbjct: 61  QTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVAR 120

Query: 251 VCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMPI 310
           +CQLYPNA+P++LVSRFFRV+ QW WPN + LC  +E  LG  VWDPR NP+DR H MPI
Sbjct: 121 ICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPI 180

Query: 311 ITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWSALFEPYIFFESYRNYL 370
           ITPAYPCMNSSYNVS STLR+M  +FQ GN IC  +E NK  W  LFEP+ FFE+Y+NYL
Sbjct: 181 ITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYL 240

Query: 371 QVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSKQCAHCSFF 430
           Q+DI AA+VDDLR WKGWVESRLRQLTL IER  F  L CHP+PH++ DTS+   HCS+F
Sbjct: 241 QIDISAANVDDLRKWKGWVESRLRQLTLKIERH-FKMLHCHPHPHDFQDTSRPL-HCSYF 298

Query: 431 MGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQIPCYVFPDG 490
           MGLQRKQG    EG+QFDIR TVEEF+H+VN Y  W PGM++ V H++RR +P +VFP G
Sbjct: 299 MGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFPGG 358

Query: 491 YK 492
            +
Sbjct: 359 VR 360


>AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 |
           chr3:2044443-2047034 FORWARD LENGTH=507
          Length = 507

 Score =  282 bits (721), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 255/456 (55%), Gaps = 22/456 (4%)

Query: 29  DLQRTLELEKFVVDSGLYESREEASKREEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDAN 88
           D + ++ L + +V+ GL  S E+  KR  V+++L ++V  WVK +          ++  N
Sbjct: 14  DDESSISLRQLMVNEGLIPSLEDEVKRRGVINQLRKIVVRWVKNVAWQHRLPQNQIDATN 73

Query: 89  AVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDDDFFYTLHDILASMEEVTELQPIPDAH 148
           A I  +GSY LGV+G  +DID LCIGP + +  +DFF +L D+L S  EV+EL  + DA 
Sbjct: 74  ATILPYGSYGLGVYGSESDIDALCIGPFFASIAEDFFISLRDMLKSRREVSELHCVKDAK 133

Query: 149 VPVMKFKFDGISIDLLYASVSRLIVPEDLDISDVSVLHNVDERTVRSLNGCRVADQILKL 208
           VP+++FKFDGI +DL YA +  L +P ++D+ +   L ++DE + + L+G R    IL+L
Sbjct: 134 VPLIRFKFDGILVDLPYAQLRVLSIPNNVDVLNPFFLRDIDETSWKILSGVRANKCILQL 193

Query: 209 VPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFF 268
           VP++E F++ L  +K WAKRRGVY N+ GFLGGV++A+L A VC   PNA  S L++ FF
Sbjct: 194 VPSLELFQSLLRCVKLWAKRRGVYGNLNGFLGGVHMAILAAFVCGYQPNATLSSLLANFF 253

Query: 269 RVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTST 328
             +  W+WP PV+L             D   +       MPI  P       +  ++ ST
Sbjct: 254 YTFAHWQWPTPVVLLE-----------DTYPSTGAPPGLMPIQLPCGSHQYCNSTITRST 302

Query: 329 LRVMMEQFQFG-NMICGEIELNKNRWSALFEPYIFFESYRNYLQVDIIAADVDDLRSWKG 387
              ++ +F  G N+    ++LN + W  LFE Y +  +Y  + ++ + AA+ +DL  W G
Sbjct: 303 FYKIVAEFLLGHNLTKDYLKLNFS-WKDLFELYPYANTYTWFTKIHLSAANQEDLSDWVG 361

Query: 388 WVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQF 447
           WV+SR R L + IE + +G   C PNP EYV+T  +  +  F+ GLQ +   V       
Sbjct: 362 WVKSRFRCLLIKIE-EVYGI--CDPNPTEYVETYTKQPNIVFYWGLQLRTINVS------ 412

Query: 448 DIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQIP 483
           DI     +F  +VN  +F      + ++ V+  Q+P
Sbjct: 413 DIESVKIDFLKNVNSGSFRGTVGRIQLTLVKASQLP 448