Miyakogusa Predicted Gene

Lj3g3v2318160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2318160.1 Non Chatacterized Hit- tr|C0PLH8|C0PLH8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,29.4,4e-18,seg,NULL,CUFF.43857.1
         (468 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12540.1 | Symbols:  | unknown protein; Has 29 Blast hits to ...   189   2e-48

>AT4G12540.1 | Symbols:  | unknown protein; Has 29 Blast hits to 26
           proteins in 11 species: Archae - 2; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:7429876-7431602 REVERSE LENGTH=461
          Length = 461

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 229/492 (46%), Gaps = 116/492 (23%)

Query: 27  DTFDRLHSDLSSLFLQIDEIVVKAFGLKKVSQKGSKKIEPFSHVLSDLLSCLK------- 79
           D    +HSD+ S+ LQIDE+VV+A   K VS+ G  ++E F  VLSD+LS LK       
Sbjct: 29  DQLFLVHSDIRSVLLQIDELVVEATKRKTVSKHGLIEVESFRTVLSDMLSSLKVSFLLHL 88

Query: 80  ----------PWVPRLQIALSSLSVESESKNEQ--VSFCEESNVSECGSPQETTLDXXXX 127
                     PW PRLQ A+S   +  E + EQ  +S  EE ++ +  SP+ T  +    
Sbjct: 89  LFLNLFLRMQPWFPRLQEAMSDFQLLPEDQEEQSLMSTNEEEDLFDVESPEPTQFEPLVS 148

Query: 128 XXXXXXWRGDCTVDRGRQMFMLTPLPLSRA-------------------LLSTKPKQPQT 168
                 WRGD   D+GRQ+F+LTPLPL ++                    ++ +P +   
Sbjct: 149 PSPLVHWRGDHNADKGRQLFLLTPLPLGKSEFLKHQNASKLTAKRIFPDTVANEPLEASK 208

Query: 169 KSESDELASS---TYGIGTSTF--LDLSRDMNTLLDSVLMKQAPTEPAPSSVAIEEANNE 223
           ++  D L      T G+G S    +D S +        L++  P                
Sbjct: 209 ETSDDVLGGESLKTAGLGKSLVHAMDFSEN--------LVEYKP---------------- 244

Query: 224 EPGLISSPFVPKRDTSMLVMMTPCLKMSPPRSCVLLEPISEIHHRGNDKVRKCTPFPVGV 283
                SSP + ++  S L +MTPCLK+SPP+SC + +P+ E    G     K T   +G 
Sbjct: 245 ----CSSPVLRRKILSEL-LMTPCLKLSPPKSCTMFKPVPESSQLGKQGACKSTCSELG- 298

Query: 284 HYXXXXXXXXXXXXXXXXXXXKYPELLGLQKVSKSGLGKKNVEASPAWLTSPPKTCVLLE 343
                                KYPELLG+Q    +   K ++E+SP W  SPPKTCVL+E
Sbjct: 299 ---------SSGIEKTDNLCSKYPELLGIQHAPIT--RKTDLESSPVWWFSPPKTCVLME 347

Query: 344 PSDETSLELEKADNEPCIQITDSVLKQPVSKLKD--DISKDRNQAKISCDQDHSIVNSLH 401
           P +E                     K+P+ +     D+     +AK + +   S+V    
Sbjct: 348 PVNE---------------------KKPIDETGGSFDVPNIIPEAKHTTEGSMSMV---- 382

Query: 402 IESTPMWPEPESSF-RTGKRPGENTLKKELWTKFEAATA--GGFQS--KLSTVQENTRKG 456
           +ESTP++ EPES   R   + GE+TLKKELWT+FE AT     F S    +TV+ N +K 
Sbjct: 383 VESTPLFKEPESIMTRNRTKAGESTLKKELWTRFEEATIHDSRFNSMTTTTTVRGNNKKC 442

Query: 457 FLDLLEEASNEQ 468
           F+++LEE S  +
Sbjct: 443 FMEMLEEVSGNE 454