Miyakogusa Predicted Gene

Lj3g3v2310040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2310040.1 Non Chatacterized Hit- tr|I3T8D3|I3T8D3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.59,0,Ribosomal_S12,Ribosomal protein S12/S23; S23_S12_E_A:
ribosomal protein S23 (S12),Ribosomal protein ,CUFF.43770.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02960.1 | Symbols:  | Ribosomal protein S12/S23 family prote...   272   6e-74
AT3G09680.1 | Symbols:  | Ribosomal protein S12/S23 family prote...   263   2e-71
ATCG00905.1 | Symbols: RPS12C, RPS12 | ribosomal protein S12C | ...    51   2e-07
ATCG01230.1 | Symbols: RPS12B, RPS12 | ribosomal protein S12B | ...    51   2e-07
ATCG00065.1 | Symbols: RPS12A, RPS12 | ribosomal protein S12A | ...    51   2e-07

>AT5G02960.1 | Symbols:  | Ribosomal protein S12/S23 family protein
           | chr5:693280-694396 REVERSE LENGTH=142
          Length = 142

 Score =  272 bits (695), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 136/142 (95%)

Query: 1   MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142


>AT3G09680.1 | Symbols:  | Ribosomal protein S12/S23 family protein
           | chr3:2969197-2970291 REVERSE LENGTH=142
          Length = 142

 Score =  263 bits (673), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/142 (93%), Positives = 134/142 (94%)

Query: 1   MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142


>ATCG00905.1 | Symbols: RPS12C, RPS12 | ribosomal protein S12C |
           chrC:97999-98793 REVERSE LENGTH=123
          Length = 123

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 92
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIPGIG--HN 73

Query: 93  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
           ++E+  VL+ G GR    V D+PGVR+ +V+
Sbjct: 74  LQEHSVVLVRG-GR----VKDLPGVRYHIVR 99


>ATCG01230.1 | Symbols: RPS12B, RPS12 | ribosomal protein S12B |
           chrC:139856-140650 FORWARD LENGTH=123
          Length = 123

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 92
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIPGIG--HN 73

Query: 93  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
           ++E+  VL+ G GR    V D+PGVR+ +V+
Sbjct: 74  LQEHSVVLVRG-GR----VKDLPGVRYHIVR 99


>ATCG00065.1 | Symbols: RPS12A, RPS12 | ribosomal protein S12A |
           chrC:69611-69724 REVERSE LENGTH=123
          Length = 123

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 92
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIPGIG--HN 73

Query: 93  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
           ++E+  VL+ G GR    V D+PGVR+ +V+
Sbjct: 74  LQEHSVVLVRG-GR----VKDLPGVRYHIVR 99