Miyakogusa Predicted Gene
- Lj3g3v2309770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2309770.1 tr|G7JRG7|G7JRG7_MEDTR IBR domain containing
protein OS=Medicago truncatula GN=MTR_4g060940 PE=4
SV=,68.37,0,IBR,Zinc finger, C6HC-type; RVT_3,NULL; no
description,Zinc finger, RING/FYVE/PHD-type; RING/U-box,N,CUFF.43759.1
(552 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60250.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 367 e-101
AT2G25370.1 | Symbols: | RING/U-box superfamily protein | chr2:... 280 1e-75
AT2G25370.2 | Symbols: | RING/U-box superfamily protein | chr2:... 256 2e-68
AT3G45580.1 | Symbols: | RING/U-box protein with C6HC-type zinc... 249 4e-66
AT5G37560.1 | Symbols: | RING/U-box superfamily protein | chr5:... 244 2e-64
AT2G25360.1 | Symbols: | RING/U-box superfamily protein | chr2:... 243 3e-64
AT2G21420.1 | Symbols: | IBR domain containing protein | chr2:9... 234 9e-62
AT2G26130.1 | Symbols: | RING/U-box protein with C6HC-type zinc... 219 6e-57
AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc... 215 7e-56
AT2G26135.1 | Symbols: | RING/U-box protein with C6HC-type zinc... 201 8e-52
AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zinc... 199 3e-51
AT2G19610.2 | Symbols: | RING/U-box superfamily protein | chr2:... 196 3e-50
AT3G45470.1 | Symbols: | IBR domain containing protein | chr3:1... 196 4e-50
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc... 182 5e-46
AT2G19610.1 | Symbols: | RING/U-box superfamily protein | chr2:... 181 1e-45
AT3G45460.1 | Symbols: | IBR domain containing protein | chr3:1... 179 4e-45
AT5G07640.1 | Symbols: | RING/U-box superfamily protein | chr5:... 163 3e-40
AT3G45570.1 | Symbols: | RING/U-box protein with C6HC-type zinc... 159 4e-39
AT3G45555.1 | Symbols: | RING/U-box protein | chr3:16712368-167... 143 3e-34
AT4G19670.2 | Symbols: | RING/U-box superfamily protein | chr4:... 140 3e-33
AT4G19670.1 | Symbols: | RING/U-box superfamily protein | chr4:... 140 3e-33
AT3G45510.1 | Symbols: | RING/U-box protein | chr3:16690790-166... 125 1e-28
AT3G45560.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 120 2e-27
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:... 116 3e-26
AT3G14250.1 | Symbols: | RING/U-box superfamily protein | chr3:... 99 5e-21
AT3G45490.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 82 1e-15
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 71 2e-12
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 70 4e-12
AT3G43180.1 | Symbols: | RING/U-box superfamily protein | chr3:... 67 3e-11
>AT5G60250.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:24252226-24254710 FORWARD
LENGTH=655
Length = 655
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/392 (46%), Positives = 246/392 (62%), Gaps = 12/392 (3%)
Query: 140 GEGCSSGDPGA-------VFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEV 192
GEG S + A ++R+YFKGLVS++ G+ VV G G+AICD+ DN+L E+
Sbjct: 126 GEGSSRVNTAAGKINGNLLYRLYFKGLVSDENGKGKMTDVV-SGFGVAICDQRDNLLFEM 184
Query: 193 SKPLLGTETSXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLAR 252
PL+ S A+ L +K +V++CD P+ Q+++GKW Q+K++
Sbjct: 185 KGPLIDNGMSRQGAELKALIRGLTEALKLGIKHIVFFCDSYPIFQYVTGKWMAKQKKISL 244
Query: 253 LVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVIC 312
L++++ + + F+ LVAR+D+K+A+KLAR++I+S T + + LKE C IC
Sbjct: 245 LLDDLQSIMQHFSSYQHVLVARNDVKFAYKLARESILSMVTPHEDPRQAKAVLKEECAIC 304
Query: 313 LEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPH 372
D FSVD C+HR+CF CVKQHVEVKLLHGM PKCPH+GC +EL+ D+C K L
Sbjct: 305 FNDIVAEGMFSVDKCRHRFCFQCVKQHVEVKLLHGMAPKCPHDGCKSELVIDACGKLLTP 364
Query: 373 KLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEP--GXXXXXXXX 430
KL + QQR E +IPVT+++YCPYPRCSALMSKT++ E +K+L P G
Sbjct: 365 KLSKLWQQRLQENAIPVTERVYCPYPRCSALMSKTKISESAKSLLSLYPKSGVRRCVECR 424
Query: 431 XXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCY 490
VPWH ++SC YK L+P PPA+D+KLKSLA + WRQC KC HMIEL++GC
Sbjct: 425 GLFCVDCKVPWHGNLSCTEYKKLHPEPPADDVKLKSLANNKMWRQCGKCQHMIELSQGCN 484
Query: 491 HITCRCGNEFCYQCGAEWKDKKATC--DCPLW 520
HITCRCG+EFCY CG W TC CP W
Sbjct: 485 HITCRCGHEFCYNCGGGWNKIMGTCLNRCPTW 516
>AT2G25370.1 | Symbols: | RING/U-box superfamily protein |
chr2:10806700-10809794 FORWARD LENGTH=603
Length = 603
Score = 280 bits (717), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 212/376 (56%), Gaps = 17/376 (4%)
Query: 140 GEGCSSGDP---GAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPL 196
GEG S V+R+ FKGLV+ + V + E+ V G G+AICDE DN+L E+ + L
Sbjct: 139 GEGSSPAAKFMDNVVYRLCFKGLVNYEAVADDVEKAVKAGFGVAICDEKDNLLHEIKESL 198
Query: 197 LGTETSXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNE 256
E S + + L ++ VV YCD + Q + G+ +++K+ LV E
Sbjct: 199 RDIEISRRGVEIMALVRGLSESFDLGMRNVVIYCDDDWIYQSIIGRGK-SKKKIDHLVEE 257
Query: 257 VYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTR-SAEAGSSTKSLKETCVICLED 315
V + K + LVAR+D+K+AF+LAR+AI S +AE G ETC I E+
Sbjct: 258 VQGILEKMACIDAVLVARNDVKFAFRLAREAIGRNSVDVNAEQG-------ETCGIFFEE 310
Query: 316 TDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLI 375
TD+ F + C HR+CF CVKQHV+VKL G P C GC +L + C K L KLI
Sbjct: 311 TDVEHMFVTEKCLHRHCFPCVKQHVKVKLRSGTEPTCLEYGCKFKLTLERCSKVLTLKLI 370
Query: 376 ETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXX 435
E +Q+ E SIP ++IYCPYP CS LMSKTE L +L+
Sbjct: 371 EMWKQKMKEDSIPAAERIYCPYPNCSMLMSKTE-LSSEADLSNVRT----CVKCCGLFCI 425
Query: 436 XXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCR 495
VP H D+S YK L+P+P +DLKLKSLA WRQCVKC HMIEL+ GC H+TCR
Sbjct: 426 DCKVPSHTDLSYDDYKKLHPDPLVDDLKLKSLANDKMWRQCVKCRHMIELSHGCNHMTCR 485
Query: 496 CGNEFCYQCGAEWKDK 511
CG EFCY+CG EW+ +
Sbjct: 486 CGYEFCYECGIEWQKR 501
>AT2G25370.2 | Symbols: | RING/U-box superfamily protein |
chr2:10806700-10809794 FORWARD LENGTH=546
Length = 546
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 205/376 (54%), Gaps = 44/376 (11%)
Query: 140 GEGCSSGDP---GAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPL 196
GEG S V+R+ FKGLV+ + V + E+ V G G+AICDE DN+L E+ + L
Sbjct: 109 GEGSSPAAKFMDNVVYRLCFKGLVNYEAVADDVEKAVKAGFGVAICDEKDNLLHEIKESL 168
Query: 197 LGTETSXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNE 256
E S +R V ++ + G+ +++K+ LV E
Sbjct: 169 RDIEIS---------------------RRGV------EIMALIIGRGK-SKKKIDHLVEE 200
Query: 257 VYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTR-SAEAGSSTKSLKETCVICLED 315
V + K + LVAR+D+K+AF+LAR+AI S +AE G ETC I E+
Sbjct: 201 VQGILEKMACIDAVLVARNDVKFAFRLAREAIGRNSVDVNAEQG-------ETCGIFFEE 253
Query: 316 TDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLI 375
TD+ F + C HR+CF CVKQHV+VKL G P C GC +L + C K L KLI
Sbjct: 254 TDVEHMFVTEKCLHRHCFPCVKQHVKVKLRSGTEPTCLEYGCKFKLTLERCSKVLTLKLI 313
Query: 376 ETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXX 435
E +Q+ E SIP ++IYCPYP CS LMSKTE L +L+
Sbjct: 314 EMWKQKMKEDSIPAAERIYCPYPNCSMLMSKTE-LSSEADLSNVR----TCVKCCGLFCI 368
Query: 436 XXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCR 495
VP H D+S YK L+P+P +DLKLKSLA WRQCVKC HMIEL+ GC H+TCR
Sbjct: 369 DCKVPSHTDLSYDDYKKLHPDPLVDDLKLKSLANDKMWRQCVKCRHMIELSHGCNHMTCR 428
Query: 496 CGNEFCYQCGAEWKDK 511
CG EFCY+CG EW+ +
Sbjct: 429 CGYEFCYECGIEWQKR 444
>AT3G45580.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16729989-16731511 REVERSE LENGTH=408
Length = 408
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 205/380 (53%), Gaps = 18/380 (4%)
Query: 137 KAFGEGCSSGDPGAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPL 196
K G S P + +R+YFKGLVSE+ V +L G G+AICD+ DN+L ++ + +
Sbjct: 14 KHVGRVSSEIKPDS-YRLYFKGLVSEETVE------LLAGFGVAICDKDDNLLFQMKEQV 66
Query: 197 LGTETSXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNE 256
+ + A+ L + + Y D+ + + + K ++ A L++
Sbjct: 67 HDSRVTVLEVEIMALKRGLTEAVGLGIDNISIYSDHYRIFELVMEKSASAEENFALLMDN 126
Query: 257 VYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDT 316
V ++++ T P LV R+ +K+ ++LA + IVS E +TC IC +D
Sbjct: 127 VQHIRQRLTSSFPVLVTRNQIKFVYELAMETIVS------EISIHIPDHDKTCSICSDDN 180
Query: 317 -DINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLI 375
+ FSV C H +C CVK+H+EV+LL G VP+C H C ++L +C L KL
Sbjct: 181 FEPELMFSVALCGHEFCVECVKRHIEVRLLAGGVPRCLHYQCESKLTLANCANLLTSKLK 240
Query: 376 ETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXX 435
+ R E SIPV +++YCP PRCS+LMS T++ N T +
Sbjct: 241 AMWELRIEEESIPVEERVYCPNPRCSSLMSVTKL----SNSTREDVTMRSCVKCGEPFCI 296
Query: 436 XXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCR 495
+PWH ++SC YK L PNP A+D+KLK+LA WRQC C ++IEL+EGC HITCR
Sbjct: 297 NCKLPWHSNLSCNDYKSLGPNPTADDIKLKALANQKMWRQCENCKNVIELSEGCMHITCR 356
Query: 496 CGNEFCYQCGAEWKDKKATC 515
CG++FCY+CGA+W + C
Sbjct: 357 CGHQFCYKCGAKWITGRVFC 376
>AT5G37560.1 | Symbols: | RING/U-box superfamily protein |
chr5:14921986-14923790 FORWARD LENGTH=444
Length = 444
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 187/360 (51%), Gaps = 17/360 (4%)
Query: 149 GAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSXXXXXX 208
V+++YFKGLVS + + + +V G G+AICDEADN+ ++K L +
Sbjct: 33 NVVYKLYFKGLVSGETAT-DKKAIVKVGFGVAICDEADNLFYGMNKSLYEAVINREEADI 91
Query: 209 XXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCN 268
+I +K VV CD + Q + G+ QQK L+ EV L+ +
Sbjct: 92 LALITGLYESIHRGVKNVVICCDDRQIYQTIIGREK-PQQKNVHLLEEVQRLRGRLASTG 150
Query: 269 PRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQ 328
LVA D +A +LA DA+V +T+ TC IC + TD D C
Sbjct: 151 TVLVATRDDNFALRLAIDALVK----------ATQEKPLTCSICSDKTDAEHMLLNDKCL 200
Query: 329 HRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIP 388
HR+CFSCVKQ V+VKL G+VP C +GC +EL +SC L KLIE +++ E IP
Sbjct: 201 HRHCFSCVKQQVKVKLRSGIVPPCLEDGCKSELTLESCSMVLTPKLIEMWKRKMEEDLIP 260
Query: 389 VTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCY 448
+KIYCPY CS LMSKTE+ + + VPWH D+SC
Sbjct: 261 DAEKIYCPYRSCSMLMSKTEL-----SREAEQSNVRACIKCSELFCIDCKVPWHSDLSCA 315
Query: 449 RYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEW 508
YK ++ D+ LK LA WRQC +C HMIEL EGC HITCRCG EFCY+CG +W
Sbjct: 316 DYKRIHSERLVNDMMLKVLANDQMWRQCSECKHMIELTEGCNHITCRCGYEFCYRCGHKW 375
>AT2G25360.1 | Symbols: | RING/U-box superfamily protein |
chr2:10804249-10805761 FORWARD LENGTH=373
Length = 373
Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/296 (44%), Positives = 179/296 (60%), Gaps = 17/296 (5%)
Query: 221 LDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYA 280
L +++VV YCD L Q++ G+ + ++K+ LV+E LL + TY + L+A +D+ +A
Sbjct: 13 LGIRQVVVYCDDQLLYQYIVGRGKI-KKKVVHLVDEFQLLLEEMTYTDADLIALNDVNFA 71
Query: 281 FKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQ-FFSVDGCQHRYCFSCVKQH 339
FKLAR+AIVS+ AE C IC E+T+ + FF+ + C HR+CF CVKQ+
Sbjct: 72 FKLAREAIVSRDDVKAE----------ICSICFEETEGERMFFTTEKCVHRHCFPCVKQY 121
Query: 340 VEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPR 399
VEVKLL G VP C +GC +L +SC K L +LIE +Q+ E SIP ++IYCPYP
Sbjct: 122 VEVKLLSGTVPTCLDDGCKFKLTLESCSKVLTLELIEMWKQKMKEDSIPAAERIYCPYPN 181
Query: 400 CSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPA 459
CS LMSKTE L +L+ VP H D+SC YK L+ +P
Sbjct: 182 CSMLMSKTE-LSSESDLSNDRS----CVKCCGLFCIDCKVPSHSDLSCAEYKKLHHDPLV 236
Query: 460 EDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATC 515
++LKLKSLA WRQC C HMIEL+ C H+TCRCG +FCYQC EWK+ + TC
Sbjct: 237 DELKLKSLAKDKKWRQCKMCRHMIELSHACNHMTCRCGYQFCYQCEVEWKNDQKTC 292
>AT2G21420.1 | Symbols: | IBR domain containing protein |
chr2:9169713-9171746 FORWARD LENGTH=468
Length = 468
Score = 234 bits (598), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 194/362 (53%), Gaps = 28/362 (7%)
Query: 151 VFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTET-SXXXXXXX 209
V+R++FKGLVS++ + E +V G GIAICDEA+ +L + K L G + +
Sbjct: 49 VYRLFFKGLVSDE-TTTDMEEIVKAGFGIAICDEANTLLYNMKKSLNGDDVINPEEVEIK 107
Query: 210 XXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNP 269
N +I ++L+ V+ C + Q L+G+ QQ + LV +V L+ K +
Sbjct: 108 ALICVLNVSIQMELRNVMICCGDYQIFQILTGRGK-PQQNIVHLVEQVQHLRGKLSSTEV 166
Query: 270 RLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQH 329
LV R D+ LA +AI ETC IC E+TD ++ F + C H
Sbjct: 167 VLVPRADV---IILAIEAIGG----------------ETCCICRENTDADRMFFTENCFH 207
Query: 330 RYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPV 389
R CFSCV +HV+ LL G+ P C H CN+EL +SC K L LIE +++ E +P
Sbjct: 208 RQCFSCVNRHVQRMLLCGISPTCLHFPCNSELTFESCSKVLTPNLIEFWKRKIEEDLVPA 267
Query: 390 TDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYR 449
DKIYCPY RCS LMSKT + + + VP H +SC
Sbjct: 268 ADKIYCPYRRCSMLMSKTALSRET-----DQSNVRACIKCCRLFCIDCKVPSHAGLSCVD 322
Query: 450 YKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWK 509
YK LNP+ P D+KLKSLA WRQCV+C++++EL EGC HITCRCG EFCY CG EW
Sbjct: 323 YKKLNPD-PLYDVKLKSLANKKKWRQCVQCSNLVELFEGCNHITCRCGFEFCYVCGKEWN 381
Query: 510 DK 511
+
Sbjct: 382 QR 383
>AT2G26130.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr2:11127134-11128476 FORWARD LENGTH=398
Length = 398
Score = 219 bits (557), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 194/369 (52%), Gaps = 25/369 (6%)
Query: 145 SGDPGAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSXX 204
+G P ++R+YFKGLV+E+ + ++L G G+AIC + D++L ++ + +
Sbjct: 9 AGKP--LYRLYFKGLVTEE------KEMLLAGFGVAICGDKDDLLFDLKVSIHDPTITLL 60
Query: 205 XXXXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKF 264
N A+ L + + CD+ + + + G Q+ +A L+ +V +++
Sbjct: 61 EVELIALKSGLNQAVSLGINHISICCDHEYIFELVMGISTPKQESIALLLRDVQGIRKYL 120
Query: 265 TYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDIN--QFF 322
T P ++ ++ A+ A +AI S+ A KETC ICL D DIN Q F
Sbjct: 121 TSSIPVMLTQNQSNLAYDFAIEAISSEIIIDIPAQ------KETCNICLND-DINADQMF 173
Query: 323 SVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRK 382
SVD H C CVK+H+EV+LL G + CPH CN+ L + C L KL + +Q+
Sbjct: 174 SVDKSGHMCCSECVKRHIEVRLLEGSLITCPHYRCNSLLTSVRCGNLLTPKLNKMWEQKT 233
Query: 383 LEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXX-XXXXXXVPW 441
+ IPV D++YCP PRCS LMS+TE L+G G V W
Sbjct: 234 KDELIPVMDRVYCPNPRCSTLMSETE-------LSGLNIGVRRCCVKCGEPFCVKCKVSW 286
Query: 442 HFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFC 501
H ++SC YK L+PNP D +L+ LA WRQC KC HMIEL+ GC + CRCG+ FC
Sbjct: 287 HNNLSCDEYKTLHPNPTENDGRLRDLANEKSWRQCSKCKHMIELSSGCISVVCRCGHTFC 346
Query: 502 YQCGAEWKD 510
YQCGA+ D
Sbjct: 347 YQCGADAGD 355
>AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:15646460-15647566 FORWARD
LENGTH=346
Length = 346
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 179/348 (51%), Gaps = 19/348 (5%)
Query: 149 GAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSXXXXXX 208
GA++++YFKG+V E+ +L G G+AI D+ D +L ++ +P+ G++ +
Sbjct: 10 GAIYKLYFKGIVIEETSQ------LLAGFGVAIFDQDDKLLFQMKRPIHGSDITVLEAEL 63
Query: 209 XXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCN 268
+ L L R+ CD+ + + + G+ Q +A L+N+V ++++ Y N
Sbjct: 64 TALKQGLTETMKLGLDRISICCDHDHIYELVMGRSTPEQDNIAMLMNDVQRMRQQLRYSN 123
Query: 269 PRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDT-DINQFFSVDGC 327
P LV R + +A+KLA + +VS+ + A TC IC + + + FSV C
Sbjct: 124 PILVTRDQISFAYKLAMETVVSEISICMPA---------TCSICFNNVLEAEKMFSVAIC 174
Query: 328 QHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASI 387
H++C CVK ++EVKLL G VP+C C ++L SC L KL +QR E I
Sbjct: 175 GHQFCVECVKHYIEVKLLEGGVPRCLDYQCESKLTLTSCGNLLTPKLKAIWKQRIEEELI 234
Query: 388 PVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSC 447
V +++YCP PRCS LMSKTE+ S + VPWH ++SC
Sbjct: 235 LVAERVYCPNPRCSGLMSKTEL---STSTEEDVSTRTCCVKCGEPFCINCKVPWHSNLSC 291
Query: 448 YRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCR 495
YK L PNP D+KLK LA W QC KC HMI EGC I CR
Sbjct: 292 DDYKRLGPNPTKNDIKLKVLANQQKWSQCAKCQHMIARIEGCNVIICR 339
>AT2G26135.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr2:11130119-11131514 FORWARD LENGTH=384
Length = 384
Score = 201 bits (512), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 183/378 (48%), Gaps = 44/378 (11%)
Query: 132 GDNYEKAFGEGCSSGDPGAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLE 191
DN + A G S + + +YFKGLVSE+ +E +AIC D ++ +
Sbjct: 10 ADNLKHA---GTPSPSKFSPYSLYFKGLVSEESPKLSAE------FRVAICGYKDGLMFQ 60
Query: 192 VSKPLLGTETSXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLA 251
+ P+ + + + A+ L + + CD + + + G+ ++ +A
Sbjct: 61 MKGPIHDSAITLLEAELMALKYGLSEAVTLGINHISICCDNNQIFEWVMGRSTPQEENIA 120
Query: 252 RLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVI 311
L+ +V ++++FT L+ D+ F K+TC I
Sbjct: 121 MLIRDVQGIRKQFTSSIAVLI---DVPALFHP----------------------KKTCTI 155
Query: 312 CLEDTDIN--QFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKF 369
C +D DIN F +D C H +C CVK+H+EV LL G + CP C ++L SC
Sbjct: 156 CFDD-DINADMMFYIDQCGHMFCSECVKRHIEVSLLQGSLITCPSYRCKSKLTYGSCVNI 214
Query: 370 LPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXX 429
L K+ E QR E SIPVTD++YCP P CSALMS TE+ LTGS+
Sbjct: 215 LTPKVKEMWIQRMGEDSIPVTDRVYCPNPTCSALMSVTEL----DQLTGSK---RCCVKC 267
Query: 430 XXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGC 489
VPWH ++SC RYK L+ N D +L LA WRQC KC HMIEL +GC
Sbjct: 268 GESFCIKCKVPWHDNLSCKRYKKLHSNRTTNDKQLNELANQESWRQCSKCKHMIELTQGC 327
Query: 490 YHITCRCGNEFCYQCGAE 507
+ CRCG+EFCY CGA+
Sbjct: 328 VRVICRCGHEFCYGCGAD 345
>AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16706312-16707649 REVERSE LENGTH=348
Length = 348
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 153/275 (55%), Gaps = 6/275 (2%)
Query: 235 LLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTR 294
L + + G+ + K A L+ +V ++ F P V + YA+KLAR+ IVS+ +
Sbjct: 25 LTEAVMGRCVPEENKTALLMIDVQRIREGFKSSFPIFVEGKRISYAYKLARETIVSEISI 84
Query: 295 SAEAGSSTKSL-KETCVICLED-TDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKC 352
S K+ K TC ICL+D + NQ F V C+HR+C C+++H+EV+LL G V +C
Sbjct: 85 SVNPPRQPKATRKTTCKICLDDDINENQMFCVGKCRHRFCSDCMRRHIEVRLLEGSVMRC 144
Query: 353 PHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEY 412
PH C L C L K+ E QQR E IPVT +IYCP RCSALMS+TE+
Sbjct: 145 PHYRCKTTLKFGGCINLLTPKIREMWQQRIKEDLIPVTGRIYCPNSRCSALMSETELSIS 204
Query: 413 SKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSF 472
+K + V WH ++SC YK LNP P D K+K+LA
Sbjct: 205 TK----EDEVRRCCFKCGQIFCIKCKVSWHSNLSCNDYKKLNPYPTENDGKIKALANQKR 260
Query: 473 WRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAE 507
WRQC KC HMIEL++GC + CRCG++FCY+CG +
Sbjct: 261 WRQCGKCQHMIELSKGCVQVKCRCGHKFCYRCGVQ 295
>AT2G19610.2 | Symbols: | RING/U-box superfamily protein |
chr2:8484455-8485863 FORWARD LENGTH=418
Length = 418
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 186/362 (51%), Gaps = 14/362 (3%)
Query: 151 VFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSXXXXXXXX 210
+R+Y KGLVSE+ + ++ VV G+G+++CD D E++K L + +
Sbjct: 49 TYRLYSKGLVSEELIKDDTMLVV--GLGLSLCDSHDYTKQEINKALRNQKLAAHPEAAEL 106
Query: 211 XXXXFNA--AIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCN 268
A+ L ++R+ ++CD +L +++ K N+ +A+L+ V LLQ +FT C
Sbjct: 107 AAIIHGLKWALELGIERIQFFCDDSNILAYVTRKAAPNESIVAKLLEHVSLLQTRFTSCQ 166
Query: 269 P-RLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGC 327
V+R D+ KLA+DAI SQ TR E + E+C +C N F V GC
Sbjct: 167 ALATVSRDDIVSVIKLAKDAIASQ-TRWCEGDTEY----ESCPVCYAYVSPNDKFEVQGC 221
Query: 328 QHRYCFSCVKQHVEV-KLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEAS 386
HR C +C+++ ++L G CP+ C N+L+ + CR F I M QRK E +
Sbjct: 222 FHRICVTCMRKPFSSEQILRGNTAICPYPDCENDLVPEDCRAFADADAITLMIQRKKEKA 281
Query: 387 IPVTDKIYCPYPRCSALMSKTEVLEY-SKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDM 445
IPV D++YCP P CS LMS +++ + SKN SE VPWH+
Sbjct: 282 IPVKDRVYCPNPSCSFLMSDLDLIRHISKNPRHSEEA-RKCMECGLSFCKKCHVPWHYKK 340
Query: 446 SCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCR-CGNEFCYQC 504
+C +K ++ L+S + W++C +C +++ GC +TCR C +EFCY C
Sbjct: 341 TCDEFKKSESYLKSDAAILESFVKTQGWKKCSQCQSIVQHGGGCQQMTCRHCKHEFCYTC 400
Query: 505 GA 506
GA
Sbjct: 401 GA 402
>AT3G45470.1 | Symbols: | IBR domain containing protein |
chr3:16680505-16681261 REVERSE LENGTH=222
Length = 222
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 129/214 (60%), Gaps = 8/214 (3%)
Query: 307 ETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSC 366
ETCVICLE+T ++ F +D C HR+C+ CV Q VEVKL +G VP C C +L ++C
Sbjct: 4 ETCVICLEETKADRMFVMDKCLHRHCYPCVNQLVEVKLRNGTVPTCLDYECKLKLSLENC 63
Query: 367 RKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXX 426
K L K+IE + E SIP+ +IYCPY CS LMSKTE+ +K+
Sbjct: 64 FKVLKPKVIELWKHMMKEESIPLAKRIYCPYINCSTLMSKTEISRSNKS------NDRAC 117
Query: 427 XXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELA 486
VPWH D+SC YK L+P+P +DL LK LA WRQCVKC H+IEL
Sbjct: 118 IKCSGLVCIDCKVPWHSDLSCAEYKKLHPDPVLDDLTLKLLANDQKWRQCVKCRHLIELN 177
Query: 487 EGCYHITCRCGNEFCYQCGAEWKDKKATC--DCP 518
+GC H+TCRCG +FCY+CG EWK + TC CP
Sbjct: 178 QGCNHMTCRCGYQFCYKCGVEWKKGQVTCPTGCP 211
>AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683263-16684592 REVERSE LENGTH=382
Length = 382
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 175/360 (48%), Gaps = 38/360 (10%)
Query: 152 FRVYFKGLVSEDFVNGESERVVLGGIGIAIC-DEADNVLLEVSKPLLGTETSXXXXXXXX 210
+ +YFKG L G G+AI +E D++L + L + +
Sbjct: 19 YNLYFKG--------------SLAGFGVAIYREEDDSILFKKKVSLHYPDFTAWEAELMA 64
Query: 211 XXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPR 270
A+ + + + D P + + + G+ +K+A +++EV ++++F+ P
Sbjct: 65 LKLGLTKAVSFRINHISMFFDNPEIFELVMGRSVPKDKKIALIMDEVQRIRQQFSSSIPF 124
Query: 271 LVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLED-TDINQFFSVDGCQH 329
LVA +++K+ +KLA++ +VS S + K+TC C D FS D C H
Sbjct: 125 LVASNEIKFVYKLAKETLVSNI-------SIPRPQKKTCGNCFNDGIKGENMFSADLCSH 177
Query: 330 RYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPV 389
+C C+K+H+EV L G +P+CPH+GC + L SC L K E ++R E SIPV
Sbjct: 178 YFCVECMKEHIEVSLNEGGLPRCPHDGCTSNLTLRSCDHLLTPKQREMWEKRIKEESIPV 237
Query: 390 TDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYR 449
D+ +CP PRC ALMSKTE+ E T + VPWH ++SC
Sbjct: 238 CDRFHCPNPRCWALMSKTELTES----TEEDGVRRCCYKCRKHFCINCKVPWHSNLSCKE 293
Query: 450 YKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWK 509
+K P ++ WRQC C H I+L+E +TCRCG +FCY CGA+WK
Sbjct: 294 HKSSGREP-----------ITTVWRQCRSCLHKIKLSEERMPVTCRCGYKFCYACGAQWK 342
>AT2G19610.1 | Symbols: | RING/U-box superfamily protein |
chr2:8484455-8485723 FORWARD LENGTH=397
Length = 397
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 177/350 (50%), Gaps = 13/350 (3%)
Query: 151 VFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSX--XXXXX 208
+R+Y KGLVSE+ + ++ VV G+G+++CD D E++K L + +
Sbjct: 49 TYRLYSKGLVSEELIKDDTMLVV--GLGLSLCDSHDYTKQEINKALRNQKLAAHPEAAEL 106
Query: 209 XXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCN 268
A+ L ++R+ ++CD +L +++ K N+ +A+L+ V LLQ +FT C
Sbjct: 107 AAIIHGLKWALELGIERIQFFCDDSNILAYVTRKAAPNESIVAKLLEHVSLLQTRFTSCQ 166
Query: 269 P-RLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGC 327
V+R D+ KLA+DAI SQ TR E + E+C +C N F V GC
Sbjct: 167 ALATVSRDDIVSVIKLAKDAIASQ-TRWCEGDTEY----ESCPVCYAYVSPNDKFEVQGC 221
Query: 328 QHRYCFSCVKQHVEV-KLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEAS 386
HR C +C+++ ++L G CP+ C N+L+ + CR F I M QRK E +
Sbjct: 222 FHRICVTCMRKPFSSEQILRGNTAICPYPDCENDLVPEDCRAFADADAITLMIQRKKEKA 281
Query: 387 IPVTDKIYCPYPRCSALMSKTEVLEY-SKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDM 445
IPV D++YCP P CS LMS +++ + SKN SE VPWH+
Sbjct: 282 IPVKDRVYCPNPSCSFLMSDLDLIRHISKNPRHSEEA-RKCMECGLSFCKKCHVPWHYKK 340
Query: 446 SCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCR 495
+C +K ++ L+S + W++C +C +++ GC +TCR
Sbjct: 341 TCDEFKKSESYLKSDAAILESFVKTQGWKKCSQCQSIVQHGGGCQQMTCR 390
>AT3G45460.1 | Symbols: | IBR domain containing protein |
chr3:16678680-16680043 REVERSE LENGTH=389
Length = 389
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 178/369 (48%), Gaps = 37/369 (10%)
Query: 144 SSGDPGA-VFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLL-EVSKPLLGTET 201
S GD + + +YFKGLV E ++ + G +AI E D LL ++ L +
Sbjct: 20 SPGDFHSDTYNLYFKGLVRE-----KTSAQLSAGFEVAIFREEDEYLLFQMKGSLHDSTV 74
Query: 202 SXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQ 261
+ A+ L + + CD L + + G+ ++ +A L+++V ++
Sbjct: 75 TVLEAELMALKRGLTEAVSLGINHISICCDRLELYELVMGRLAPEKENIALLMDDVQCIR 134
Query: 262 RKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQF 321
R+ T P V + K+AFKLA+++I ++ + + +++
Sbjct: 135 RELTSSIPVTVTENQAKFAFKLAKESISIRTPPTEQKACGEVNIEH-----------ELM 183
Query: 322 FSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQR 381
FSV C+H++ +KQH+EV+L+ G VP+CPH+GC + L SC L KL E + R
Sbjct: 184 FSVALCRHQFGVEWMKQHIEVRLIEGDVPRCPHDGCKSILSLKSCSHLLTPKLEEMWEHR 243
Query: 382 KLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXX-XXXXXXXXXXXXXVP 440
E IPV D+ +CP PRC ALMSKTE++E +E G V
Sbjct: 244 IKEEFIPVCDRFHCPNPRCWALMSKTELVE------STEDGVRRCCFKCRKAFCINCKVL 297
Query: 441 WHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEF 500
WH D+SC YK L NP + RQC KC HMI+L+ ++ CRCG F
Sbjct: 298 WHSDLSCKEYKTLGRNP------------KTISRQCKKCQHMIKLSHKTINVYCRCGYSF 345
Query: 501 CYQCGAEWK 509
CY CGA+WK
Sbjct: 346 CYTCGAQWK 354
>AT5G07640.1 | Symbols: | RING/U-box superfamily protein |
chr5:2414847-2415876 FORWARD LENGTH=316
Length = 316
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 157/316 (49%), Gaps = 16/316 (5%)
Query: 150 AVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTE-TSXXXXXX 208
F +Y KGLVSE+ + ES+++ GG G+AICD DN L E++K L G E T
Sbjct: 5 TTFWLYCKGLVSEEVIRDESKQI--GGFGVAICDHEDNRLYEMNKVLGGEESTHQQAAEL 62
Query: 209 XXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCN 268
N A+ LDL RV ++CD +L++++GK N+ +A LV EV LLQ KF++C
Sbjct: 63 AALIHALNWALELDLGRVTFFCDDSNILEYVTGKAEPNESTVATLVKEVSLLQSKFSFCE 122
Query: 269 PRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQ 328
V + D+ + KLA+DAI SQ R E ETC +C E ++ F V GC
Sbjct: 123 ALPVMK-DITFVLKLAKDAIASQ-IRWREG----DVYMETCPVCYEHVTSDEKFEVPGCF 176
Query: 329 HRYCFSCVKQHVEVKL-LHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASI 387
HR+CF C+K+ +V L V CP GCN+EL + C L K ++ M K + I
Sbjct: 177 HRFCFDCIKKQADVALEFAKPVVNCPSFGCNSELQREDCEGVLKPKQLDRMTMYKKASMI 236
Query: 388 --PVTDKIYCPYPRCSALMSKTEVLEYSKN--LTGSEPGXXXXXXXXXXXXXXXXVPWHF 443
V D + C C +M+K +++EY+K + G WH
Sbjct: 237 KAKVLDFVCC--TTCDNVMAKPDLIEYTKTFFVDAELSGVRKCTECGYCFCGECRAGWHS 294
Query: 444 DMSCYRYKMLNPNPPA 459
M+C Y N P+
Sbjct: 295 GMTCEEYFKRESNEPS 310
>AT3G45570.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:16725094-16726116 REVERSE
LENGTH=312
Length = 312
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 19/312 (6%)
Query: 152 FRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTET-SXXXXXXXX 210
+ +YFKGLVSE+ +L G +AICD+ DN+L ++ + + + +
Sbjct: 16 YSLYFKGLVSEETTE------LLAGFAVAICDKDDNLLFQMKEQVHDSRVVTLMEVELMA 69
Query: 211 XXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPR 270
+ L + + YCD+ + + + + Q+ + L+++V ++++ T P
Sbjct: 70 LKRGLTEVVRLGIDHISIYCDHYQIFELVMERSVSEQENILMLMDDVQRIRKRLTSSVPV 129
Query: 271 LV-ARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDT-DINQFFSVDGCQ 328
LV R+ +++ ++LA + IVS E +TC IC D + Q FSV C
Sbjct: 130 LVMTRNQIEFVYELAMETIVS------EIRIDMPDHNKTCSICSGDNIEPEQIFSVALCG 183
Query: 329 HRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIP 388
H +C CVKQH+EVKLL G VP+C H C + L SC L KL + R E SIP
Sbjct: 184 HEFCMECVKQHIEVKLLSGGVPRCLHYQCESNLTLGSCGNILTSKLKAMWELRIEEESIP 243
Query: 389 VTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCY 448
V +++YCP P CS+LMS T++ N T + +PWH ++SC
Sbjct: 244 VAERVYCPNPLCSSLMSVTKL----SNSTREDVTMRTCVKCGEPFCINCKLPWHSNLSCN 299
Query: 449 RYKMLNPNPPAE 460
YK L PNP A+
Sbjct: 300 DYKSLGPNPTAD 311
>AT3G45555.1 | Symbols: | RING/U-box protein |
chr3:16712368-16713009 REVERSE LENGTH=213
Length = 213
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 105/189 (55%), Gaps = 6/189 (3%)
Query: 307 ETCVICL-EDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADS 365
ETC IC +D Q + V C H++C C+K+++EV+LL G V CP+ C ++L S
Sbjct: 15 ETCSICFNDDFKSEQMYYVALCNHKFCLECMKRYIEVRLLEGTVLICPYYQCESKLTLKS 74
Query: 366 CRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXXX 425
C L KL +Q+ E SIPVT++ YCP PRCSALMSK E+ + + E G
Sbjct: 75 CFHILTSKLKAMWEQKIEEESIPVTERFYCPNPRCSALMSKIELSK-----STLEDGFVR 129
Query: 426 XXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIEL 485
V W ++SC K L NP ++D LK LA WRQC KC HMI+L
Sbjct: 130 CFQCGERFCINCKVSWQSNLSCDNCKKLGNNPTSDDKMLKVLANEKKWRQCEKCQHMIKL 189
Query: 486 AEGCYHITC 494
+EGC H+TC
Sbjct: 190 SEGCIHVTC 198
>AT4G19670.2 | Symbols: | RING/U-box superfamily protein |
chr4:10699383-10701342 REVERSE LENGTH=532
Length = 532
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 154/353 (43%), Gaps = 16/353 (4%)
Query: 175 GGIGIAICDEADNVLLEVSKPLLGTETSXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPP 234
GIG+ + D L++V K L A+ +L VV D
Sbjct: 79 SGIGVVLERSGDLELIQVQKKL-DFYVEESVANYLALMDGLEVALQNNLSSVVAVTDSEL 137
Query: 235 LLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTR 294
L ++ + + L L V +L DL A LA+ A+ S+
Sbjct: 138 LYNQITREEQLEIPLLVALRERVLEKTSNLNGFVLKLAPFCDLDEALSLAQVAVGIVSSN 197
Query: 295 SAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCP 353
K + E C IC ED S+ C H++C C+K +VE K+ VP +CP
Sbjct: 198 L----DGDKPI-ENCSICCEDRQSEMMLSLK-CTHKFCSHCMKTYVEGKVKTSEVPIRCP 251
Query: 354 HEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYS 413
C + L A C+ FLP ++ ++ + + KIYCPYP CS L+ E L
Sbjct: 252 QVQCKHYLSAAECKSFLPVTTFKSFEEANVCSK--NNGKIYCPYPNCSFLLDPQECLSSG 309
Query: 414 KNLTGSEPGXXXX-----XXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPP-AEDLKLKSL 467
+ + S VPWH MSC +++L + +D+ L L
Sbjct: 310 RASSSSSTQSENSCCVECPVCERFVCVDCGVPWHASMSCEEFQILPVDERYPDDITLHRL 369
Query: 468 ATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATCDCPLW 520
A WR+C +C MIELA+GC H+TCRCG+EFCY CGAE+++ + TC C W
Sbjct: 370 ARYKRWRRCQQCRIMIELAQGCNHMTCRCGHEFCYSCGAEYREGQQTCTCAFW 422
>AT4G19670.1 | Symbols: | RING/U-box superfamily protein |
chr4:10699383-10701342 REVERSE LENGTH=532
Length = 532
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 154/353 (43%), Gaps = 16/353 (4%)
Query: 175 GGIGIAICDEADNVLLEVSKPLLGTETSXXXXXXXXXXXXFNAAIFLDLKRVVYYCDYPP 234
GIG+ + D L++V K L A+ +L VV D
Sbjct: 79 SGIGVVLERSGDLELIQVQKKL-DFYVEESVANYLALMDGLEVALQNNLSSVVAVTDSEL 137
Query: 235 LLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTR 294
L ++ + + L L V +L DL A LA+ A+ S+
Sbjct: 138 LYNQITREEQLEIPLLVALRERVLEKTSNLNGFVLKLAPFCDLDEALSLAQVAVGIVSSN 197
Query: 295 SAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCP 353
K + E C IC ED S+ C H++C C+K +VE K+ VP +CP
Sbjct: 198 L----DGDKPI-ENCSICCEDRQSEMMLSLK-CTHKFCSHCMKTYVEGKVKTSEVPIRCP 251
Query: 354 HEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYS 413
C + L A C+ FLP ++ ++ + + KIYCPYP CS L+ E L
Sbjct: 252 QVQCKHYLSAAECKSFLPVTTFKSFEEANVCSK--NNGKIYCPYPNCSFLLDPQECLSSG 309
Query: 414 KNLTGSEPGXXXX-----XXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPP-AEDLKLKSL 467
+ + S VPWH MSC +++L + +D+ L L
Sbjct: 310 RASSSSSTQSENSCCVECPVCERFVCVDCGVPWHASMSCEEFQILPVDERYPDDITLHRL 369
Query: 468 ATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATCDCPLW 520
A WR+C +C MIELA+GC H+TCRCG+EFCY CGAE+++ + TC C W
Sbjct: 370 ARYKRWRRCQQCRIMIELAQGCNHMTCRCGHEFCYSCGAEYREGQQTCTCAFW 422
>AT3G45510.1 | Symbols: | RING/U-box protein |
chr3:16690790-16691728 REVERSE LENGTH=257
Length = 257
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 10/208 (4%)
Query: 246 NQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSL 305
+ +K A L+++V+ ++++FT+ P LV + +KLA++ +VS++ R +
Sbjct: 7 HHEKFALLMDDVHRIRQQFTFSIPILVTGKQANFTYKLAKETLVSRNIRPMPRTTQ---- 62
Query: 306 KETCVIC-LEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLAD 364
K+TC IC ++D + + FS C H +C C+KQ +EV L G VP+CP GC + L
Sbjct: 63 KKTCGICFVDDIEGQEMFSAALCSHYFCVECMKQRIEVSLNEGGVPRCPRHGCKSALTLR 122
Query: 365 SCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGXX 424
SC L K E +QR E SIPV ++ +CP P+C ALMSKTE+ E + +
Sbjct: 123 SCDHLLTPKQREMWEQRIKEESIPVCNRFHCPNPKCWALMSKTELTESTDDGV-----RR 177
Query: 425 XXXXXXXXXXXXXXVPWHFDMSCYRYKM 452
V WH ++SC YKM
Sbjct: 178 CCSKCRKPFCIDCNVSWHSNLSCKEYKM 205
>AT3G45560.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:16719630-16722674 REVERSE
LENGTH=503
Length = 503
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 18/263 (6%)
Query: 148 PGAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLL-GTETSXXXX 206
P + R+YFKG VSE+ G G+AICD+ D +L + + +
Sbjct: 8 PFHMNRLYFKGFVSEE----------TKGFGVAICDQEDKLLYHIKGSRHHDSAITVLEA 57
Query: 207 XXXXXXXXFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTY 266
A+ L + + +YCD+ + + + G Q +A L+++V ++++FT
Sbjct: 58 ELTALKRGLIEAVGLGINHISFYCDHDQIFELVMGISVPEQDNIALLMDDVQRIRKQFTS 117
Query: 267 CNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICL-EDTDINQFFSVD 325
P L+ R+ K+A+KLA + IVS+ + S ++TC IC +D FSVD
Sbjct: 118 SIPVLMTRNQAKFAYKLAMETIVSEISIDM-----APSQRKTCGICFNDDFKAEHMFSVD 172
Query: 326 GCQHRYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEA 385
C H++C C+ Q+++V+LL +CPH C ++L C L +L E + R +
Sbjct: 173 LCGHQFCVECMTQYIKVRLLEESEMRCPHYQCESKLTVVRCANLLTPELREMWEHRSQKE 232
Query: 386 SIPVTDKIYCPYPRCSALMSKTE 408
S+ V DK YC C+ L+ + E
Sbjct: 233 SVVVADKAYCQI-ECAWLLCQME 254
>AT3G53690.1 | Symbols: | RING/U-box superfamily protein |
chr3:19898997-19900044 REVERSE LENGTH=320
Length = 320
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 12/225 (5%)
Query: 294 RSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLHGMVP-KC 352
R SS+K+ C IC++ I + F + GC H YC CV +++ KL ++ +C
Sbjct: 100 REKGQSSSSKTATFDCEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIEC 159
Query: 353 PHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEY 412
P GC+ L D CR+ LP ++ + EA + + K YCPY CSAL+ LE
Sbjct: 160 PVSGCSGRLEPDQCRQILPKEVFDRWGDALCEAVVMRSKKFYCPYKDCSALV----FLEE 215
Query: 413 SK-NLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPA-EDLKLKSLATS 470
S+ + SE WH +M+C ++ L N +D+ L ++A
Sbjct: 216 SEVKMKDSE-----CPHCHRMVCVECGTQWHPEMTCEEFQKLAANERGRDDILLATMAKQ 270
Query: 471 SFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATC 515
W++C C IE ++GC ++ CRCG FCY CG +D C
Sbjct: 271 KKWKRCPSCKFYIEKSQGCLYMKCRCGLAFCYNCGTPSRDHTHYC 315
>AT3G14250.1 | Symbols: | RING/U-box superfamily protein |
chr3:4745963-4746958 REVERSE LENGTH=303
Length = 303
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 13/214 (6%)
Query: 306 KETCVICLEDTDINQFF-SVDGCQHRYCFSCVKQHVEVKLLHGMVP-KCPHEGCNNELLA 363
+ C+IC+++ + F C H YC C ++V K+ KCP C +
Sbjct: 92 RRLCMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENASRIKCPDVECTRLIEP 151
Query: 364 DSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGX 423
+CR +P + + ++ E+ I DK YCP+ CSA+M E N+T +E
Sbjct: 152 YTCRDLIPKDVFDRWEKILCESLISSWDKFYCPFKDCSAMMVNNE--NGDANVTQTE--- 206
Query: 424 XXXXXXXXXXXXXXXVPWHFDMSCYRYKMLN----PNPPAEDLKLKSLATSSFWRQCVKC 479
V WH + C ++ + +D L +A + WR+C C
Sbjct: 207 --CRSCHRLFCVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKNKQWRRCPSC 264
Query: 480 NHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKA 513
++ EGC HI CRCG +FCY CG+ W A
Sbjct: 265 KFYVDKVEGCQHIKCRCGYQFCYGCGSVWSSSHA 298
>AT3G45490.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT2G25370.1);
Has 99 Blast hits to 96 proteins in 10 species: Archae -
0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 97;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:16687066-16687838 REVERSE LENGTH=211
Length = 211
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 14/148 (9%)
Query: 150 AVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSXXXXXXX 209
V R+Y KGLVS D V G G+AICD+ D +L E+ + + E
Sbjct: 29 VVHRLYSKGLVSTDNVAA--------GFGVAICDQMDELLFEMKESVSDVEG----VKVR 76
Query: 210 XXXXXFNAAIFLDLKRVVYYCDYPPLLQHL-SGKWPVNQQKLAR-LVNEVYLLQRKFTYC 267
+ ++ L ++++V YCD L Q++ SGK Q K+ + L+ EV L+ KF
Sbjct: 77 ALIRGLSESLDLGIRKIVIYCDDNELYQNITSGKCKPKQIKVVKQLIKEVQRLREKFASS 136
Query: 268 NPRLVARHDLKYAFKLARDAIVSQSTRS 295
LVA +D+K+AF+LAR+AIVSQ+T +
Sbjct: 137 EAILVAENDIKFAFELAREAIVSQTTSA 164
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related |
chr4:439086-445043 FORWARD LENGTH=1787
Length = 1787
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 18/222 (8%)
Query: 288 IVSQSTRSAEA-GSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKL-- 344
+V++ R A G ++ C ICL + D +S++GC H +C +C+ + E +
Sbjct: 1539 MVNELAREKSALGEKPDEIELECPICLSEVDDG--YSLEGCSHLFCKACLLEQFEASMRN 1596
Query: 345 LHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKI--YCPYPRCSA 402
C H C ++ R L + ++ + L A + +D +C P C +
Sbjct: 1597 FDAFPILCSHIDCGAPIVVADMRALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPS 1656
Query: 403 LMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDL 462
+ E EP + +H ++C RYK NP DL
Sbjct: 1657 IYRVAGPQE------SGEP--FICGACHSETCTRCHLEYHPLITCERYKKFKENP---DL 1705
Query: 463 KLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQC 504
LK A ++C C IE +GC H+ CRCG C+ C
Sbjct: 1706 SLKDWAKGKDVKECPICKSTIEKTDGCNHLQCRCGKHICWTC 1747
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related |
chr5:3261245-3267188 FORWARD LENGTH=1775
Length = 1775
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 18/222 (8%)
Query: 288 IVSQSTRSAEA-GSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKL-- 344
+V++ R A G ++ C ICL + D +S++GC H +C +C+ + E +
Sbjct: 1542 MVNELAREKSALGEKPDEIEVECPICLSEVD--DGYSLEGCSHLFCKACLLEQFEASMRN 1599
Query: 345 LHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIY--CPYPRCSA 402
C H C ++ R L + ++ + L + + +D + C P C +
Sbjct: 1600 FDAFPILCSHIDCGAPIVLADMRALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPS 1659
Query: 403 LMSKTEVLEYSKNLTGSEPGXXXXXXXXXXXXXXXXVPWHFDMSCYRYKMLNPNPPAEDL 462
V + EP + +H ++C RYK NP DL
Sbjct: 1660 ------VYRVAGPQESGEP--FICGACHSEICTRCHLEYHPLITCERYKKFKENP---DL 1708
Query: 463 KLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQC 504
LK A ++C C IE +GC H+ CRCG C+ C
Sbjct: 1709 SLKDWAKGKNVKECPICKSTIEKTDGCNHMKCRCGKHICWTC 1750
>AT3G43180.1 | Symbols: | RING/U-box superfamily protein |
chr3:15178043-15178937 FORWARD LENGTH=191
Length = 191
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 271 LVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICL-EDTDINQFFSVDGCQH 329
LV + K +KLA +A V + + A C IC ED Q +SV C H
Sbjct: 30 LVTENQNKSFYKLAMEAGVPEISIHMPA---------ICRICFDEDVKAEQMYSVALCGH 80
Query: 330 RYCFSCVKQHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHK 373
++C CVKQH+E +LL G VP+CPH+ C +L SC L K
Sbjct: 81 QFCVDCVKQHIESRLLEGCVPRCPHDQCEYKLTFRSCANLLTPK 124