Miyakogusa Predicted Gene

Lj3g3v2309730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2309730.1 Non Chatacterized Hit- tr|D7G9G5|D7G9G5_ECTSI
Putative uncharacterized protein OS=Ectocarpus
silicul,50,1e-18,L28p-like,NULL; Ribosomal_L28,Ribosomal protein L28;
39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL,Riboso,CUFF.44284.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31460.1 | Symbols:  | Ribosomal L28 family | chr4:15259773-1...   278   1e-75

>AT4G31460.1 | Symbols:  | Ribosomal L28 family |
           chr4:15259773-15260847 REVERSE LENGTH=212
          Length = 212

 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 151/176 (85%)

Query: 1   MAFRGKEMMKKVLKKVGEKNLTPKAKESLQKCIPKTKIVMGRAKRGLFAGRHIQFGNTVS 60
           MAFRGKEMMKK++KKVG +N+TP+ KE L+ C+P TK+VMGRAKRGL+AGRHIQ+GN VS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKTRRNWKPNVQDKRLFSYILDRHIRAKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RR WKPNVQ+KRLFSYI D HI+ KVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGVLWKAKIEKLYEELGKKEVVFFSPEDEANFEQSFKDLKLSEREARKEIRKIM 176
           TE+G+ WK K+E  Y ELG+ EV FF+PEDEA  EQ FKDL +++++AR+E R+  
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTF 176