Miyakogusa Predicted Gene

Lj3g3v2298670.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2298670.1 tr|D8LRR1|D8LRR1_ECTSI Proteasome subunit beta
type OS=Ectocarpus siliculosus GN=Psb4 PE=3
SV=1,47.96,5e-19,PROTEASOME_B_2,Proteasome B-type subunit; PROTEASOME
SUBUNIT BETA TYPE 4,NULL; PROTEASOME SUBUNIT AL,CUFF.44276.1
         (97 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56450.1 | Symbols: PBG1 | 20S proteasome beta subunit G1 | c...   175   5e-45

>AT1G56450.1 | Symbols: PBG1 | 20S proteasome beta subunit G1 |
           chr1:21141970-21144186 FORWARD LENGTH=246
          Length = 246

 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 89/97 (91%)

Query: 1   MIGVNFEDNHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQ 60
           MIGV+FED+H+ATG GNHLARPILRDEWH +L+FE+GVKLLEKCMRVLLYRDRSA+NK+Q
Sbjct: 150 MIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAINKLQ 209

Query: 61  IAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW 97
           IAK+TEEG T+  P+SLKTYWEFS+F NPT GA GSW
Sbjct: 210 IAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246