Miyakogusa Predicted Gene

Lj3g3v2297640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2297640.1 Non Chatacterized Hit- tr|K0T5B2|K0T5B2_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,46.15,0.0000000004,seg,NULL,CUFF.44268.1
         (252 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07910.2 | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:244...   202   1e-52
AT1G07910.1 | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:244...   202   1e-52

>AT1G07910.2 | Symbols: ATRNL, RNL, AtRLG1 | RNAligase |
           chr1:2446712-2454386 FORWARD LENGTH=1104
          Length = 1104

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 128/194 (65%), Gaps = 15/194 (7%)

Query: 66  EAPLSSAMGDSATAAETVSNKLAGMHIGENS-------EQTGLGHANKGAIWKHKSYGTT 118
           +AP  S    +   AE V+N+  G+ + E++        QT   H  +  +WK KSYGT 
Sbjct: 2   DAPFESGDSSATVVAEAVNNQFGGLSLKESNTNAPVLPSQTTSNHRVQNLVWKPKSYGTV 61

Query: 119 AAPEVDNKPAGKVAVDGARVDAGGVASTQKSGISGAGLSKLFQGNLLEKFEVDNSTYSQA 178
           +     +  A +V    A    G    T+     G  LSK+F GNLLEKF VD STY  A
Sbjct: 62  SG----SSSATEVGKTSAVSQIGSSGDTK----VGLNLSKIFGGNLLEKFSVDKSTYCHA 113

Query: 179 HIRATFYPKFENEKSDQETRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSF 238
            IRATFYPKFENEK+DQE RTRMIEMVSKGLATLEVSLKHSGSLFMYAGH+GGAYAKNSF
Sbjct: 114 QIRATFYPKFENEKTDQEIRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHKGGAYAKNSF 173

Query: 239 GNIYTAVGVFVLGR 252
           GNIYTAVGVFVL R
Sbjct: 174 GNIYTAVGVFVLSR 187


>AT1G07910.1 | Symbols: ATRNL, RNL, AtRLG1 | RNAligase |
           chr1:2446712-2454386 FORWARD LENGTH=1104
          Length = 1104

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 128/194 (65%), Gaps = 15/194 (7%)

Query: 66  EAPLSSAMGDSATAAETVSNKLAGMHIGENS-------EQTGLGHANKGAIWKHKSYGTT 118
           +AP  S    +   AE V+N+  G+ + E++        QT   H  +  +WK KSYGT 
Sbjct: 2   DAPFESGDSSATVVAEAVNNQFGGLSLKESNTNAPVLPSQTTSNHRVQNLVWKPKSYGTV 61

Query: 119 AAPEVDNKPAGKVAVDGARVDAGGVASTQKSGISGAGLSKLFQGNLLEKFEVDNSTYSQA 178
           +     +  A +V    A    G    T+     G  LSK+F GNLLEKF VD STY  A
Sbjct: 62  SG----SSSATEVGKTSAVSQIGSSGDTK----VGLNLSKIFGGNLLEKFSVDKSTYCHA 113

Query: 179 HIRATFYPKFENEKSDQETRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSF 238
            IRATFYPKFENEK+DQE RTRMIEMVSKGLATLEVSLKHSGSLFMYAGH+GGAYAKNSF
Sbjct: 114 QIRATFYPKFENEKTDQEIRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHKGGAYAKNSF 173

Query: 239 GNIYTAVGVFVLGR 252
           GNIYTAVGVFVL R
Sbjct: 174 GNIYTAVGVFVLSR 187