Miyakogusa Predicted Gene

Lj3g3v2296580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2296580.1 Non Chatacterized Hit- tr|G7II42|G7II42_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,37.42,8e-19,seg,NULL,
gene.Ljchr3_pseudomol_20120830.path1.gene4971.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52330.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    83   1e-16
AT1G52330.2 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    81   3e-16
AT4G13270.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    70   4e-13

>AT1G52330.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:19488962-19489763 FORWARD LENGTH=214
          Length = 214

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 20  DVWISVAVRVQNRDVYWMDLEEVDVGVKYRGKKLGHVESKRWHVRRWGTIHAFGELE-SS 78
           D+ + V ++V N DVY  D  ++DV + YRGK LGHV S   HV  +G+ +   E E   
Sbjct: 90  DMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELDG 149

Query: 79  ALPSADVAHLLQDLSKGKVFFHTVTEVTGYVGFLSFPLPIEFKL 122
            +   DV HL+ DL+KG V F TVTE  G +G L F  P++ K+
Sbjct: 150 VMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKAKV 193


>AT1G52330.2 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:19488962-19489645 FORWARD LENGTH=227
          Length = 227

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 20  DVWISVAVRVQNRDVYWMDLEEVDVGVKYRGKKLGHVESKRWHVRRWGTIHAFGELE-SS 78
           D+ + V ++V N DVY  D  ++DV + YRGK LGHV S   HV  +G+ +   E E   
Sbjct: 90  DMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHVTAFGSSYLDAEAELDG 149

Query: 79  ALPSADVAHLLQDLSKGKVFFHTVTEVTGYVGFLSFPLPIEFK 121
            +   DV HL+ DL+KG V F TVTE  G +G L F  P++ +
Sbjct: 150 VMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKVR 192


>AT4G13270.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr4:7731280-7732902 FORWARD LENGTH=215
          Length = 215

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 20  DVWISVAVRVQNRDVYWMDLEEVDVGVKYRGKKLGHVESKRWHVRRWGTIHAFGELESSA 79
           D+  S+ ++V+NRD + +D + + V + YRG++LG V+SK  H++   + +    LE   
Sbjct: 91  DLSFSLTIKVRNRDFFSLDYDSLVVSIGYRGRELGLVKSKGGHLKARDSSYIDATLELDG 150

Query: 80  LPSA-DVAHLLQDLSKGKVFFHTVTEVTGYVGFLSFPLPIEFKL 122
           L    DV +L+ DL+KG + F T+ +V G +G L F +PI+ K+
Sbjct: 151 LEVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGVLLFNIPIQGKV 194