Miyakogusa Predicted Gene

Lj3g3v2286550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2286550.1 tr|B9GFP4|B9GFP4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_548840 PE=4 SV=1,76.21,0,no
description,Aldolase-type TIM barrel; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; PDXS_SNZ_2,gene.g48722.t1.1
         (230 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine biosyn...   345   1e-95
AT5G01410.1 | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | Al...   313   5e-86
AT2G38230.1 | Symbols: ATPDX1.1, PDX1.1 | pyridoxine biosynthesi...   308   2e-84

>AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine
           biosynthesis 1.2 | chr3:5444121-5445065 REVERSE
           LENGTH=314
          Length = 314

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/236 (70%), Positives = 197/236 (83%), Gaps = 9/236 (3%)

Query: 1   MTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEILSPADDHNHINKHS 60
           M DP LIK++KR VS+P+++RARVGHFVEAQILES  VDYIDESEI+S ADD + INKH+
Sbjct: 81  MPDPVLIKEVKRAVSVPVMARARVGHFVEAQILESLAVDYIDESEIISVADDDHFINKHN 140

Query: 61  FRCPFVCGARSLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNVRSVMGELRALSNMDE 120
           FR PF+CG R  GEALRRIREGAAM+RIQGDL+ +GNIAETVKNVRS+MGE+R L+NMD+
Sbjct: 141 FRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNVRSLMGEVRVLNNMDD 200

Query: 121 DEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFVGSEVF 180
           DEVF FAKKI APYDLVAQTKQMGR+PVV FA+GGI TPADAALMMQLGC GVFVGSEVF
Sbjct: 201 DEVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALMMQLGCDGVFVGSEVF 260

Query: 181 NCEDPFKRVRGIIQAVRNYNDPHVLVE-------SMANLNLGDDMIEMEPFGAANV 229
           +  DPFK++R I+QAV++YNDPHVL E       +M +LN+  D I  + FG  +V
Sbjct: 261 DGPDPFKKLRSIVQAVQHYNDPHVLAEMSSGLENAMESLNVRGDRI--QDFGQGSV 314


>AT5G01410.1 | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 |
           Aldolase-type TIM barrel family protein |
           chr5:172576-173505 REVERSE LENGTH=309
          Length = 309

 Score =  313 bits (803), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 146/227 (64%), Positives = 187/227 (82%), Gaps = 8/227 (3%)

Query: 1   MTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEILSPADDHNHINKHS 60
           M+DP +IK+IK+ V+IP++++AR+GHFVEAQILE+ G+DYIDESE+L+ AD+ +HINKH+
Sbjct: 77  MSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTLADEDHHINKHN 136

Query: 61  FRCPFVCGARSLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNVRSVMGELRALSNMDE 120
           FR PFVCG R+LGEALRRIREGAAM+R +G+ +G+GNI E V++VRSV G++R L NMD+
Sbjct: 137 FRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVNGDIRVLRNMDD 195

Query: 121 DEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFVGSEVF 180
           DEVF FAKK+ APYDLV QTKQ+GRLPVV FAAGG+ TPADAALMMQLGC GVFVGS +F
Sbjct: 196 DEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIF 255

Query: 181 NCEDPFKRVRGIIQAVRNYNDPHVLV-------ESMANLNLGDDMIE 220
              DP +R R I+QAV +Y+DP +LV       E+M  +NL D+ +E
Sbjct: 256 KSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDEKVE 302


>AT2G38230.1 | Symbols: ATPDX1.1, PDX1.1 | pyridoxine biosynthesis
           1.1 | chr2:16011475-16012404 FORWARD LENGTH=309
          Length = 309

 Score =  308 bits (788), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/227 (64%), Positives = 182/227 (80%), Gaps = 9/227 (3%)

Query: 1   MTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEILSPADDHNHINKHS 60
           M+DP +IK+IK  V+IP++++AR+GHFVEAQILE+ GVDY+DESE+L+ AD+ NHINKH+
Sbjct: 78  MSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADEDNHINKHN 137

Query: 61  FRCPFVCGARSLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNVRSVMGELRALSNMDE 120
           F+ PFVCG R+LGEALRRIREGAAM+R +G+ +G+GN+ E V++VRSV G +R L +MD+
Sbjct: 138 FKIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNVVEAVRHVRSVNGAIRLLRSMDD 196

Query: 121 DEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQLGCHGVFVGSEVF 180
           DEVF +AKKI APYDLV QTK++GRLPVV FAAGG+ TPADAALMMQLGC GVFVGS VF
Sbjct: 197 DEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVF 256

Query: 181 NCEDPFKRVRGIIQAVRNYNDPHVLV-------ESMANLNLGDDMIE 220
              DP KR + I+QAV NY D  VL        E+M  LNL DD +E
Sbjct: 257 KSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNL-DDKVE 302