Miyakogusa Predicted Gene

Lj3g3v2284470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2284470.1 tr|B9GFP4|B9GFP4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_548840 PE=4
SV=1,73.99,0,SOR_SNZ,Vitamin B6 biosynthesis protein; no
description,Aldolase-type TIM barrel; SUBFAMILY NOT NAME,CUFF.43865.1
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine biosyn...   429   e-120
AT5G01410.1 | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | Al...   370   e-103
AT2G38230.1 | Symbols: ATPDX1.1, PDX1.1 | pyridoxine biosynthesi...   359   2e-99
AT2G38210.1 | Symbols: PDX1L4 | putative PDX1-like protein 4 | c...    57   2e-08

>AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine
           biosynthesis 1.2 | chr3:5444121-5445065 REVERSE
           LENGTH=314
          Length = 314

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/311 (67%), Positives = 254/311 (81%), Gaps = 12/311 (3%)

Query: 1   MAEEDGGAVTLYNTTVITDPKQN-PYSFKLGAVQTLRGGAILQVSTPHQAKIAEQAGACA 59
           M ++D GAVTLY+ T ITD K+N P+S K+G  Q LRGGAI++VS+ +QAK+AE AGAC+
Sbjct: 6   MTDQDQGAVTLYSGTAITDAKKNHPFSVKVGLAQVLRGGAIVEVSSVNQAKLAESAGACS 65

Query: 60  ITVSDPLRP--AISRMTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESE 117
           + VSDP+R    + RM DP LIK++KR VS+P+++RARVGHFVEAQILES  VDYIDESE
Sbjct: 66  VIVSDPVRSRGGVRRMPDPVLIKEVKRAVSVPVMARARVGHFVEAQILESLAVDYIDESE 125

Query: 118 ILSPADDHNHINKHNFRCPFVCGARTLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNV 177
           I+S ADD + INKHNFR PF+CG R  GEALRRIREGAAM+RIQGDL+ +GNIAETVKNV
Sbjct: 126 IISVADDDHFINKHNFRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNV 185

Query: 178 RSVMGELRALSNMDEDEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALM 237
           RS+MGE+R L+NMD+DEVF FAKKI APYDLVAQTKQMGR+PVV FA+GGI TPADAALM
Sbjct: 186 RSLMGEVRVLNNMDDDEVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALM 245

Query: 238 MQLGCHGVFVGSEVFNCEDPFKRVRGIIQAVRNYNDPHVLVE-------SMANLNLGDDM 290
           MQLGC GVFVGSEVF+  DPFK++R I+QAV++YNDPHVL E       +M +LN+  D 
Sbjct: 246 MQLGCDGVFVGSEVFDGPDPFKKLRSIVQAVQHYNDPHVLAEMSSGLENAMESLNVRGDR 305

Query: 291 IEMEPFGAANV 301
           I  + FG  +V
Sbjct: 306 I--QDFGQGSV 314


>AT5G01410.1 | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 |
           Aldolase-type TIM barrel family protein |
           chr5:172576-173505 REVERSE LENGTH=309
          Length = 309

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/302 (58%), Positives = 230/302 (76%), Gaps = 14/302 (4%)

Query: 4   EDGGAVTLYNTTVITDPKQNPYSFKLGAVQTLRGGAILQVSTPHQAKIAEQAGACAITVS 63
           E  G V +Y    IT+ K++P+S K+G  Q LRGG I+ V    QA+IAE+AGACA+   
Sbjct: 2   EGTGVVAVYGNGAITEAKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMAL 61

Query: 64  DPL------RPAISRMTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESE 117
           + +      +  ++RM+DP +IK+IK+ V+IP++++AR+GHFVEAQILE+ G+DYIDESE
Sbjct: 62  ERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDESE 121

Query: 118 ILSPADDHNHINKHNFRCPFVCGARTLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNV 177
           +L+ AD+ +HINKHNFR PFVCG R LGEALRRIREGAAM+R +G+ +G+GNI E V++V
Sbjct: 122 VLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHV 180

Query: 178 RSVMGELRALSNMDEDEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALM 237
           RSV G++R L NMD+DEVF FAKK+ APYDLV QTKQ+GRLPVV FAAGG+ TPADAALM
Sbjct: 181 RSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALM 240

Query: 238 MQLGCHGVFVGSEVFNCEDPFKRVRGIIQAVRNYNDPHVLV-------ESMANLNLGDDM 290
           MQLGC GVFVGS +F   DP +R R I+QAV +Y+DP +LV       E+M  +NL D+ 
Sbjct: 241 MQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDEK 300

Query: 291 IE 292
           +E
Sbjct: 301 VE 302


>AT2G38230.1 | Symbols: ATPDX1.1, PDX1.1 | pyridoxine biosynthesis
           1.1 | chr2:16011475-16012404 FORWARD LENGTH=309
          Length = 309

 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 175/300 (58%), Positives = 224/300 (74%), Gaps = 16/300 (5%)

Query: 7   GAVTLYNTTVITDPKQ-NPYSFKLGAVQTLRGGAILQVSTPHQAKIAEQAGACAITVSDP 65
           G V +Y    +T+ KQ +P+S K+G  Q LRGG I+ V    QA+IAE+AGACA+   + 
Sbjct: 5   GVVAVYGEGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALER 64

Query: 66  L------RPAISRMTDPSLIKDIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEIL 119
           +      +  ++RM+DP +IK+IK  V+IP++++AR+GHFVEAQILE+ GVDY+DESE+L
Sbjct: 65  VPADIRAQGGVARMSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVL 124

Query: 120 SPADDHNHINKHNFRCPFVCGARTLGEALRRIREGAAMVRIQGDLSGSGNIAETVKNVRS 179
           + AD+ NHINKHNF+ PFVCG R LGEALRRIREGAAM+R +G+ +G+GN+ E V++VRS
Sbjct: 125 TLADEDNHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNVVEAVRHVRS 183

Query: 180 VMGELRALSNMDEDEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQ 239
           V G +R L +MD+DEVF +AKKI APYDLV QTK++GRLPVV FAAGG+ TPADAALMMQ
Sbjct: 184 VNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAALMMQ 243

Query: 240 LGCHGVFVGSEVFNCEDPFKRVRGIIQAVRNYNDPHVLV-------ESMANLNLGDDMIE 292
           LGC GVFVGS VF   DP KR + I+QAV NY D  VL        E+M  LNL DD +E
Sbjct: 244 LGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNL-DDKVE 302


>AT2G38210.1 | Symbols: PDX1L4 | putative PDX1-like protein 4 |
          chr2:16007198-16007437 FORWARD LENGTH=79
          Length = 79

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 7  GAVTLYNTTVITDPKQ-NPYSFKLGAVQTLRGGAILQVSTPHQAKIAEQAGACAI 60
          G V +Y    +T+ KQ +P+S K+G  Q LRGG I+ V    QA+IAE+AGACA+
Sbjct: 5  GVVAVYGEGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAV 59