Miyakogusa Predicted Gene

Lj3g3v2248290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2248290.2 Non Chatacterized Hit- tr|K4DF87|K4DF87_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,53.92,3e-19,seg,NULL,CUFF.43750.2
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80000.2 | Symbols:  | CASC3/Barentsz eIF4AIII binding | chr1...    46   5e-06
AT1G80000.1 | Symbols:  | CASC3/Barentsz eIF4AIII binding | chr1...    46   5e-06

>AT1G80000.2 | Symbols:  | CASC3/Barentsz eIF4AIII binding |
           chr1:30093195-30096742 FORWARD LENGTH=605
          Length = 605

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 14/107 (13%)

Query: 1   MAFPGYVA---GSGKSEMTWLPVXXXXXXXXXXSY--PYLAVDGAY-TRQSGPTSAMGNS 54
           MA PGY     G+G  EMTWLP+          SY  PY  +DG+Y   + G  S+ G+S
Sbjct: 500 MALPGYFQPEHGTGNPEMTWLPILAGPGALGG-SYCPPYTVLDGSYQADKPGLPSSAGSS 558

Query: 55  SKEHNDVNKANNELKPPQKSELVSDEYGQRQN-----KPRRYSEMNF 96
           S+E++  N  + E  P ++ E+ ++   QR N     +PRRYSEM+F
Sbjct: 559 SQENSSNNPNDEE--PMERPEVTNNGNSQRSNSNPNKQPRRYSEMSF 603


>AT1G80000.1 | Symbols:  | CASC3/Barentsz eIF4AIII binding |
           chr1:30093195-30096742 FORWARD LENGTH=605
          Length = 605

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 14/107 (13%)

Query: 1   MAFPGYVA---GSGKSEMTWLPVXXXXXXXXXXSY--PYLAVDGAY-TRQSGPTSAMGNS 54
           MA PGY     G+G  EMTWLP+          SY  PY  +DG+Y   + G  S+ G+S
Sbjct: 500 MALPGYFQPEHGTGNPEMTWLPILAGPGALGG-SYCPPYTVLDGSYQADKPGLPSSAGSS 558

Query: 55  SKEHNDVNKANNELKPPQKSELVSDEYGQRQN-----KPRRYSEMNF 96
           S+E++  N  + E  P ++ E+ ++   QR N     +PRRYSEM+F
Sbjct: 559 SQENSSNNPNDEE--PMERPEVTNNGNSQRSNSNPNKQPRRYSEMSF 603