Miyakogusa Predicted Gene

Lj3g3v2246970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2246970.1 tr|D7M9Q0|D7M9Q0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,65.52,0.000000000000001,RRM_3,RNA-binding motif; RNA-BINDING
PROTEIN-RELATED,NULL; LUPUS LA PROTEIN-RELATED,NULL; no
descrip,NODE_105060_length_252_cov_24.654762.path3.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313...    82   5e-17
AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313...    82   6e-17

>AT4G32720.1 | Symbols: AtLa1, La1 | La protein 1 |
           chr4:15787313-15789683 FORWARD LENGTH=433
          Length = 433

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 49/58 (84%)

Query: 5   IDFTMRAESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPVTGEAEKEYCRI 62
           +DF M +E+G++RF+E EA+QK+RAAAVL+  GGL VKN+IA+L+PV GEAEKEY  +
Sbjct: 332 VDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVKNFIAVLEPVIGEAEKEYWTL 389


>AT4G32720.2 | Symbols: AtLa1, La1 | La protein 1 |
           chr4:15787313-15789498 FORWARD LENGTH=404
          Length = 404

 Score = 82.0 bits (201), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 49/58 (84%)

Query: 5   IDFTMRAESGFIRFEESEAAQKSRAAAVLSKNGGLVVKNYIAMLDPVTGEAEKEYCRI 62
           +DF M +E+G++RF+E EA+QK+RAAAVL+  GGL VKN+IA+L+PV GEAEKEY  +
Sbjct: 332 VDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVKNFIAVLEPVIGEAEKEYWTL 389