Miyakogusa Predicted Gene

Lj3g3v2235770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2235770.1 Non Chatacterized Hit- tr|K3XTZ7|K3XTZ7_SETIT
Uncharacterized protein OS=Setaria italica GN=Si005404,75.93,7e-19,no
description,Cytochrome c oxidase, subunit Vb;
Q8LBW7_ARATH_Q8LBW7;,Cytochrome c oxidase, subunit ,CUFF.43703.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80230.1 | Symbols:  | Rubredoxin-like superfamily protein | ...   187   2e-48
AT3G15640.2 | Symbols:  | Rubredoxin-like superfamily protein | ...   172   6e-44
AT3G15640.1 | Symbols:  | Rubredoxin-like superfamily protein | ...   172   7e-44
AT1G52710.1 | Symbols:  | Rubredoxin-like superfamily protein | ...   112   1e-25

>AT1G80230.1 | Symbols:  | Rubredoxin-like superfamily protein |
           chr1:30169784-30170999 REVERSE LENGTH=171
          Length = 171

 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 113/157 (71%), Gaps = 19/157 (12%)

Query: 1   MWRRLLSSHLKTLA---TCSPQS----------------VSTVAALNCSSVSLLRHFSDT 41
           MWRR++SSHLK+++   +C+  S                 S++ A +     L+   +  
Sbjct: 1   MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60

Query: 42  TSIKKKVEDVMPIATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVG 101
           T++KK+VEDVMPIATGHE+EELQA LEGR + +I+ P GPFGTKEAPAVVKSYYD RIVG
Sbjct: 61  TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120

Query: 102 CPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVV 138
           CPGGEGEDEHDVVWFWLEKGK  ECPVC QYF LEVV
Sbjct: 121 CPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVV 157


>AT3G15640.2 | Symbols:  | Rubredoxin-like superfamily protein |
           chr3:5299273-5301371 FORWARD LENGTH=175
          Length = 175

 Score =  172 bits (437), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 112/157 (71%), Gaps = 19/157 (12%)

Query: 1   MWRRLLSSHLKTLAT----CSPQS-------------VSTVAALNCSSVSLLRHFSDT-- 41
           MWRR++SS LKTLA      SP+               +  +A++ SS  + R FS    
Sbjct: 1   MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSE 60

Query: 42  TSIKKKVEDVMPIATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVG 101
           T   KKVEDVMPIATGHE+EEL+A LEGR + +I+ P GPFGTKEAPA+VKSYYDKRIVG
Sbjct: 61  TPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIVG 120

Query: 102 CPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVV 138
           CPGGEGEDEHDVVWFWLEKGK  ECPVC QYF LEVV
Sbjct: 121 CPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVV 157


>AT3G15640.1 | Symbols:  | Rubredoxin-like superfamily protein |
           chr3:5299273-5301371 FORWARD LENGTH=176
          Length = 176

 Score =  172 bits (436), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 98/158 (62%), Positives = 112/158 (70%), Gaps = 20/158 (12%)

Query: 1   MWRRLLSSHLKTLAT----CSPQS-------------VSTVAALNCSSVSLLRHFSDT-- 41
           MWRR++SS LKTLA      SP+               +  +A++ SS  + R FS    
Sbjct: 1   MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60

Query: 42  -TSIKKKVEDVMPIATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIV 100
            T   KKVEDVMPIATGHE+EEL+A LEGR + +I+ P GPFGTKEAPA+VKSYYDKRIV
Sbjct: 61  ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query: 101 GCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVV 138
           GCPGGEGEDEHDVVWFWLEKGK  ECPVC QYF LEVV
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVV 158


>AT1G52710.1 | Symbols:  | Rubredoxin-like superfamily protein |
           chr1:19638627-19640112 REVERSE LENGTH=90
          Length = 90

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 58/71 (81%)

Query: 63  LQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGK 122
           L     GR +L+I+HP  PFGTKE+PAVV+SY+DKR +GC GGEGED HDVVWFWL+KGK
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 123 PHECPVCAQYF 133
             ECPVC+QYF
Sbjct: 64  SFECPVCSQYF 74