Miyakogusa Predicted Gene

Lj3g3v2224720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2224720.1 tr|I0Z1Q0|I0Z1Q0_9CHLO tRNA-guanine
transglycosylase OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,38.99,6e-19,ZF_RANBP2_2,Zinc finger, RanBP2-type;
ZF_RANBP2_1,Zinc finger, RanBP2-type; ZINC FINGER
PROTEIN,NULL,CUFF.43714.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15680.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   152   7e-38
AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   125   1e-29
AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   102   8e-23

>AT3G15680.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr3:5315437-5316048 FORWARD LENGTH=164
          Length = 164

 Score =  152 bits (385), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 93/160 (58%), Gaps = 17/160 (10%)

Query: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXX---XXXXXV 57
           MSRPGDWNCRSC HLNFQRRDSCQRCGDS+                             V
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 58  RPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLVGG-----------FSSDILRSRXXXX 106
           RPGDWYC   NCG HNFASRS+CFKCG FKD+   G           F +DI+RSR    
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSR---V 117

Query: 107 XXXXXXXXXXXXDWICSRSGCNEHNFASRMECFKCSAPRD 146
                       DWIC+R GCNEHNFASRMECF+C+APRD
Sbjct: 118 PGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157


>AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr5:8876639-8877339 FORWARD LENGTH=170
          Length = 170

 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 84/163 (51%), Gaps = 17/163 (10%)

Query: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXX--XXXXXVR 58
           M+RPGDWNCR C HLNFQRRDSCQRC + +                            VR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 59  PGDWYCAAANCGAHNFASRSSCFKCGAFKDDL-------VGGFSSDILRSRXXXXXXXXX 111
           PGDWYC   +CG HNFA+RSSCFKCGA KD+          GF    +  R         
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 112 XXXX--------XXXDWICSRSGCNEHNFASRMECFKCSAPRD 146
                          DWIC RSGCNEHNFASR ECF+C+AP++
Sbjct: 121 SSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163



 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 58  RPGDWYCAAANCGAHNFASRSSCFKC-----GAFKDDLVGGFSSDILRSRXXXXXXXXXX 112
           RPGDW C    C   NF  R SC +C     G    DL+ GF    + S           
Sbjct: 3   RPGDWNCRL--CSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSS----SFGFNTG 56

Query: 113 XXXXXXDWICSRSGCNEHNFASRMECFKCSAPRDTY 148
                 DW C+   C  HNFA+R  CFKC A +D +
Sbjct: 57  PDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEF 92


>AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr2:11365275-11365789 FORWARD LENGTH=138
          Length = 138

 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 5   GDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPGDWYC 64
           GDW C +CQH NF++R+SCQ+CG  K+                         V  GDWYC
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTE-----------VMAGDWYC 54

Query: 65  AAANCGAHNFASRSSCFKCGAFKDDLVGGFSSDILRSRXXXXXXXXXXXXXXXXDWICSR 124
            A NCG+HN+ASR+SC++CG  K +    +    + +                 DW+C R
Sbjct: 55  GALNCGSHNYASRTSCYRCGMIKVEYTEQYYGAQMVA--YGNDGAACPPGWKTGDWVCPR 112

Query: 125 SGCNEHNFASRMECFKCSAPRD 146
            GC  HN+ASR ECFKC   RD
Sbjct: 113 VGCGVHNYASRAECFKCKTTRD 134