Miyakogusa Predicted Gene

Lj3g3v2224710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2224710.1 Non Chatacterized Hit- tr|E0T2V0|E0T2V0_EDWTF
Putative aspartate racemase OS=Edwardsiella tarda
(str,27.24,1e-16,Aspartate/glutamate racemase,Asp/Glu racemase; no
description,Asp/Glu racemase; seg,NULL; Asp_Glu_ra,CUFF.43687.1
         (304 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15410.1 | Symbols:  | aspartate-glutamate racemase family | ...   298   2e-81

>AT1G15410.1 | Symbols:  | aspartate-glutamate racemase family |
           chr1:5299577-5300681 FORWARD LENGTH=330
          Length = 330

 Score =  298 bits (764), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 184/238 (77%)

Query: 60  NATLKFLRKLMEFSSEDGGNAPPFVICSDPLLSKELLSYERSYLVSSTSEVEGLKLDTSS 119
           ++TLKF++KL+++SS DG ++ PFV+CSDP L+KELL YE +   S     E   +D   
Sbjct: 90  DSTLKFVKKLVDWSSNDGKSSLPFVLCSDPALNKELLLYEENSYPSLYHREESTPVDPKL 149

Query: 120 IVQSLMSKRGFLECSGARCVVMPCHVSHSWYEEVSKGCSVPFLHMAECVARRLKDAKLKP 179
           IV++L +KR +LE  GA+ ++MPCH++H WYEEV +G  VP LHM EC+A+ L++AK+KP
Sbjct: 150 IVENLRNKRRYLERCGAKLILMPCHIAHIWYEEVCEGSLVPLLHMGECIAKELQEAKMKP 209

Query: 180 LEAGNPLRIGVLATNATLAAGFYQEKLQNEGFEVVLPDRATMEHTVIPAIEALDRKDMEG 239
           LEAGNPLR+GV+AT+ATL+AGFYQEKLQ+ GFE VLPD+ATMEHTVIP+IEA+ RKDMEG
Sbjct: 210 LEAGNPLRVGVMATSATLSAGFYQEKLQSNGFEAVLPDKATMEHTVIPSIEAMKRKDMEG 269

Query: 240 ACNLFRIALQVLLVRAVNSVILASDDMRXXXXXXXXXXXXCIDPMDALAWSTIKWARS 297
           A NL RIALQVLLV+AVN V+L SD+MR            C+DPMDALA S IKWA +
Sbjct: 270 ARNLLRIALQVLLVQAVNVVMLGSDEMRDLLPGDDPLLKKCVDPMDALARSAIKWAEN 327