Miyakogusa Predicted Gene

Lj3g3v2214670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2214670.1 Non Chatacterized Hit- tr|I1NC79|I1NC79_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.17876
PE,80.39,5e-18,TruD,Pseudouridine synthase, TruD; TRUD,Pseudouridine
synthase, TruD, insertion domain; Pseudouridin,CUFF.43684.1
         (53 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04820.1 | Symbols:  | Pseudouridine synthase family protein ...    68   1e-12

>AT3G04820.1 | Symbols:  | Pseudouridine synthase family protein |
           chr3:1321453-1325949 REVERSE LENGTH=715
          Length = 715

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/37 (81%), Positives = 32/37 (86%)

Query: 1   MMYVHSYQSYLWNHAASTRVQKYGTEQVVLGDLVYCK 37
           MMYVHSYQSYLWN+AAS RV+ YGT QVVLGDLV  K
Sbjct: 443 MMYVHSYQSYLWNNAASLRVKNYGTSQVVLGDLVSTK 479