Miyakogusa Predicted Gene
- Lj3g3v2213630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2213630.1 tr|Q9SSC1|Q9SSC1_ARATH At1g80180/F18B13_26
OS=Arabidopsis thaliana GN=F18B13.26 PE=2 SV=1,46.43,4e-19,
,CUFF.43680.1
(109 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 99 6e-22
AT1G15400.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 88 1e-18
AT1G15400.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 87 2e-18
AT1G15400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 87 2e-18
AT5G20100.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 81 1e-16
>AT1G80180.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15400.3); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:30157057-30157473 REVERSE LENGTH=138
Length = 138
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 84/140 (60%), Gaps = 33/140 (23%)
Query: 1 MAGLQRSEVSFRRQGSSGLVWDEKLLSGELNRKEEGQDNKGSTDHQN------------- 47
MAGLQRS +SFRRQGSSG+VWD++L++ EL+ ++ D KG T Q+
Sbjct: 1 MAGLQRSTISFRRQGSSGIVWDDRLIA-ELS-QQAANDRKGETLQQDEQAKLITSEVQDQ 58
Query: 48 ---------VKELRTTT-VQRSRSNGG------YRTGRVSPAIDPPSPKLSACGFCAAFG 91
+K +RT ++RSRSNGG TGRVSPA+DPPSP+LSA G C+AFG
Sbjct: 59 TTKPIAGEGLKPIRTDGGMERSRSNGGGAIRHHRNTGRVSPAVDPPSPRLSAFGCCSAFG 118
Query: 92 K--PTGDKGQRSKPGKPRTR 109
K P QR +P K R+R
Sbjct: 119 KKQPGKKVNQRKRPAKRRSR 138
>AT1G15400.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast
hits to 84 proteins in 17 species: Archae - 0; Bacteria
- 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0;
Other Eukaryotes - 3 (source: NCBI BLink). |
chr1:5296019-5296824 REVERSE LENGTH=148
Length = 148
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 32/128 (25%)
Query: 1 MAGLQRSEVSFRRQGSSGLVWDEKLLSGELNR------KEEGQDNKG----STDHQNVK- 49
M GLQRS +SFRRQGSSG+V+D++L++ ELN+ K+E Q ++ S + VK
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIA-ELNKSGNNEQKDESQRDEQPKPMSESSEQVKP 59
Query: 50 -----ELRTTT--------VQRSRSNGG-----YRT-GRVSPAIDPPSPKLSACGFCAAF 90
+LR ++RSRSNGG +RT GRVSPA+DPPSP++S+CG C+AF
Sbjct: 60 IDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAF 119
Query: 91 GK-PTGDK 97
GK P G K
Sbjct: 120 GKNPPGKK 127
>AT1G15400.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast
hits to 82 proteins in 16 species: Archae - 0; Bacteria
- 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0;
Other Eukaryotes - 3 (source: NCBI BLink). |
chr1:5296402-5296824 REVERSE LENGTH=140
Length = 140
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 32/128 (25%)
Query: 1 MAGLQRSEVSFRRQGSSGLVWDEKLLSGELNR------KEEGQDNKG----STDHQNVK- 49
M GLQRS +SFRRQGSSG+V+D++L++ ELN+ K+E Q ++ S + VK
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIA-ELNKSGNNEQKDESQRDEQPKPMSESSEQVKP 59
Query: 50 -----ELRTTT--------VQRSRSNGG-----YRT-GRVSPAIDPPSPKLSACGFCAAF 90
+LR ++RSRSNGG +RT GRVSPA+DPPSP++S+CG C+AF
Sbjct: 60 IDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAF 119
Query: 91 GK-PTGDK 97
GK P G K
Sbjct: 120 GKNPPGKK 127
>AT1G15400.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast
hits to 82 proteins in 16 species: Archae - 0; Bacteria
- 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0;
Other Eukaryotes - 3 (source: NCBI BLink). |
chr1:5296033-5296824 REVERSE LENGTH=145
Length = 145
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 32/128 (25%)
Query: 1 MAGLQRSEVSFRRQGSSGLVWDEKLLSGELNR------KEEGQDNKG----STDHQNVK- 49
M GLQRS +SFRRQGSSG+V+D++L++ ELN+ K+E Q ++ S + VK
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIA-ELNKSGNNEQKDESQRDEQPKPMSESSEQVKP 59
Query: 50 -----ELRTTT--------VQRSRSNGG-----YRT-GRVSPAIDPPSPKLSACGFCAAF 90
+LR ++RSRSNGG +RT GRVSPA+DPPSP++S+CG C+AF
Sbjct: 60 IDEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAF 119
Query: 91 GK-PTGDK 97
GK P G K
Sbjct: 120 GKNPPGKK 127
>AT5G20100.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:6790153-6790494 FORWARD
LENGTH=113
Length = 113
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 7/94 (7%)
Query: 3 GLQRSEVSFRRQGSSGLVWDEKLLSGELNRKEEGQDNKGSTDHQNVKELRTTTVQRSRSN 62
LQRS SFRRQGSSGL+W+++ LSGE+ R +E Q+++ + T TV+RS S+
Sbjct: 2 ALQRSTASFRRQGSSGLIWNDRFLSGEI-RNDERQEDRCNDHRDGSMAATTATVKRSASD 60
Query: 63 ----GGYRTGRVSPAIDPPSPKLSA--CGFCAAF 90
G R G +SPA+DPPSPK+SA CGFC+ F
Sbjct: 61 GGCGHGGRLGELSPALDPPSPKISAVGCGFCSLF 94