Miyakogusa Predicted Gene

Lj3g3v2213520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2213520.1 Non Chatacterized Hit- tr|J3L103|J3L103_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G2,74.14,3e-16,PDEFORMYLASE,Formylmethionine deformylase;
Pep_deformylase,Peptide deformylase; no description,Pepti,CUFF.43679.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A | ...   328   2e-90
AT5G14660.2 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase...    90   2e-18
AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase...    90   2e-18

>AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A |
           chr1:5294653-5295625 FORWARD LENGTH=269
          Length = 269

 Score =  328 bits (842), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 155/204 (75%), Positives = 178/204 (87%)

Query: 58  GWFLGLTADNKKMKLPDTVKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGV 117
           GW LGL    KK+ LP+ V +GDPVLHE A+EV+P EI SER+QKIIDDMI+VMR APGV
Sbjct: 66  GWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGV 125

Query: 118 GLAAPQIGVPLRIIVVEDTKEYISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFF 177
           GLAAPQIGVPLRIIV+EDTKEYISYAPKEE  AQ+R  FDL+V++NP L+++SN+ ALFF
Sbjct: 126 GLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFF 185

Query: 178 EGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMV 237
           EGCLSVDGFRA VER+L+V VTG DR G  I++NASGWQARILQHECDHLDG LYVDKMV
Sbjct: 186 EGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMV 245

Query: 238 PRTFRTVDNLNLPLGQGCPKLGPR 261
           PRTFRTVDNL+LPL +GCPKLGP+
Sbjct: 246 PRTFRTVDNLDLPLAEGCPKLGPQ 269


>AT5G14660.2 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B
           | chr5:4727129-4728671 REVERSE LENGTH=273
          Length = 273

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 17/169 (10%)

Query: 76  VKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRIIVVED 135
           V+  DP+L    + ++   I  E ++ ++D M  VM    G+GL+APQ+G+ ++++V   
Sbjct: 84  VEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140

Query: 136 TKEYISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFFEGCLSVDGFRAVVERHLD 195
             E     P E  +         +V++NPK++K S++   F EGCLS  G  A V R   
Sbjct: 141 AGE-----PGEGKE---------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQS 186

Query: 196 VEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTV 244
           V++   D  G    I+ S   ARI QHE DHL+G L+ D+M  +   ++
Sbjct: 187 VKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSI 235


>AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B
           | chr5:4727129-4728671 REVERSE LENGTH=273
          Length = 273

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 17/169 (10%)

Query: 76  VKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRIIVVED 135
           V+  DP+L    + ++   I  E ++ ++D M  VM    G+GL+APQ+G+ ++++V   
Sbjct: 84  VEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140

Query: 136 TKEYISYAPKEETKAQDRVPFDLLVILNPKLEKKSNRTALFFEGCLSVDGFRAVVERHLD 195
             E     P E  +         +V++NPK++K S++   F EGCLS  G  A V R   
Sbjct: 141 AGE-----PGEGKE---------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQS 186

Query: 196 VEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTV 244
           V++   D  G    I+ S   ARI QHE DHL+G L+ D+M  +   ++
Sbjct: 187 VKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSI 235