Miyakogusa Predicted Gene

Lj3g3v2210420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2210420.1 tr|E5GCC1|E5GCC1_CUCME AP2/ERF domain-containing
transcription factor (Fragment) OS=Cucumis melo sub,49.52,1e-16,SHN
(SHINE), DNA BINDING / TRANSCRIPTION FACTOR,NULL;
seg,NULL,gene.g48645.t1.1
         (131 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15360.1 | Symbols: SHN1, WIN1 | Integrase-type DNA-binding s...   120   3e-28
AT5G11190.1 | Symbols: SHN3 | Integrase-type DNA-binding superfa...    93   6e-20
AT5G25390.1 | Symbols: SHN2 | Integrase-type DNA-binding superfa...    92   8e-20
AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding superfa...    92   9e-20

>AT1G15360.1 | Symbols: SHN1, WIN1 | Integrase-type DNA-binding
           superfamily protein | chr1:5283609-5284506 FORWARD
           LENGTH=199
          Length = 199

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 82/147 (55%), Gaps = 16/147 (10%)

Query: 1   MSGRNAKTNFPVADKPMGNHXXXXX-------------XXXXXXXXXXKLRKCCKSPSPS 47
           MSGRNAKTNFP+ +   G                              KLRKCCKSPSPS
Sbjct: 53  MSGRNAKTNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPS 112

Query: 48  LTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPDLV---DGSDK 104
           LTCLRLDT +SHIGVWQKRAG +SDS+W+M VEL    +   T+     D +       +
Sbjct: 113 LTCLRLDTASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVE 172

Query: 105 VKPEEGNALDEEQRIALQMIEELLNRN 131
           +       LDEE+++ALQMIEELLN N
Sbjct: 173 IGGSREEVLDEEEKVALQMIEELLNTN 199


>AT5G11190.1 | Symbols: SHN3 | Integrase-type DNA-binding
           superfamily protein | chr5:3564976-3566051 FORWARD
           LENGTH=189
          Length = 189

 Score = 92.8 bits (229), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 8/136 (5%)

Query: 1   MSGRNAKTNFPVADKPMGN------HXXXXXXXXXXXXXXXKLRKCCKSPSPSLTCLRLD 54
           M+G+NAKTNFPV     G+      +               KLRK CK  +PSLTCLRLD
Sbjct: 53  MNGQNAKTNFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLD 112

Query: 55  TENSHIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPDLVDGSDKVKPEEGNA-L 113
           T++SHIGVWQKRAG ++   W+M +EL    NE S  D  L  +   + + + EE  A +
Sbjct: 113 TDSSHIGVWQKRAGSKTSPTWVMRLELGNVVNE-SAVDLGLTTMNKQNVEKEEEEEEAII 171

Query: 114 DEEQRIALQMIEELLN 129
            +E ++A++MIEELLN
Sbjct: 172 SDEDQLAMEMIEELLN 187


>AT5G25390.1 | Symbols: SHN2 | Integrase-type DNA-binding
           superfamily protein | chr5:8820637-8821741 FORWARD
           LENGTH=186
          Length = 186

 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 12/133 (9%)

Query: 1   MSGRNAKTNFPVADKPMGN----HXXXXXXXXXXXXXXXKLRKCCKSPSPSLTCLRLDTE 56
           M+G++AKTNFPV      N    +               KLRK CK  +P LTCLRLD +
Sbjct: 50  MNGQSAKTNFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDND 109

Query: 57  NSHIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPDLVDGSDKVKPEEGNALDEE 116
           +SHIGVWQKRAG ++  NW+ +VEL  K N     D +   +     KV+ E+   + E+
Sbjct: 110 SSHIGVWQKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKM-----KVRNED---VQED 161

Query: 117 QRIALQMIEELLN 129
            ++A+QMIEELLN
Sbjct: 162 DQMAMQMIEELLN 174


>AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding
           superfamily protein | chr5:8820637-8821741 FORWARD
           LENGTH=189
          Length = 189

 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 12/133 (9%)

Query: 1   MSGRNAKTNFPVADKPMGN----HXXXXXXXXXXXXXXXKLRKCCKSPSPSLTCLRLDTE 56
           M+G++AKTNFPV      N    +               KLRK CK  +P LTCLRLD +
Sbjct: 53  MNGQSAKTNFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDND 112

Query: 57  NSHIGVWQKRAGPRSDSNWIMMVELERKKNEGSTSDSKLPDLVDGSDKVKPEEGNALDEE 116
           +SHIGVWQKRAG ++  NW+ +VEL  K N     D +   +     KV+ E+   + E+
Sbjct: 113 SSHIGVWQKRAGSKTSPNWVKLVELGDKVNARPGGDIETNKM-----KVRNED---VQED 164

Query: 117 QRIALQMIEELLN 129
            ++A+QMIEELLN
Sbjct: 165 DQMAMQMIEELLN 177