Miyakogusa Predicted Gene

Lj3g3v2210360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2210360.1 tr|C1E0K3|C1E0K3_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_78600
,36.18,2e-16,no description,NULL; SNARE-like,Longin-like
domain,CUFF.43669.1
         (147 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15370.1 | Symbols:  | SNARE-like superfamily protein | chr1:...   269   5e-73

>AT1G15370.1 | Symbols:  | SNARE-like superfamily protein |
           chr1:5287135-5288375 FORWARD LENGTH=147
          Length = 147

 Score =  269 bits (687), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 127/146 (86%), Positives = 141/146 (96%)

Query: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60
           MILAVLFAN+ GN+LIERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI
Sbjct: 1   MILAVLFANSVGNVLIERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDICGKPPTERVFLDKYGRICLCLDE 120
           VYT+LGDVSI++VGKDEYDELAL+E I++IT+AVKD+CGKPPTERVFLDKYGRICLCLDE
Sbjct: 61  VYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDE 120

Query: 121 IVWKGYLENTENDRIKRLLRLKPPTE 146
           IVW G LENT+ DRIKRL+RLKPP+E
Sbjct: 121 IVWNGLLENTDKDRIKRLIRLKPPSE 146