Miyakogusa Predicted Gene

Lj3g3v2200270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2200270.1 tr|G7IWQ9|G7IWQ9_MEDTR F-box protein SKIP23
OS=Medicago truncatula GN=MTR_3g030380 PE=4 SV=1,37.3,3e-19,seg,NULL;
DUF295,Protein of unknown function DUF295,CUFF.43662.1
         (171 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17030.1 | Symbols:  | F-box family protein with a domain of ...    88   3e-18
AT2G17036.1 | Symbols:  | F-box family protein with a domain of ...    67   4e-12
AT5G60060.1 | Symbols:  | Protein of unknown function (DUF295) |...    57   8e-09
AT3G25750.1 | Symbols:  | F-box family protein with a domain of ...    47   4e-06

>AT2G17030.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7399108-7400650 FORWARD
           LENGTH=407
          Length = 407

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 89/193 (46%), Gaps = 30/193 (15%)

Query: 2   PYDDVCVFNGR---------------PCPSIDVIAEPVFGGDEKFLVESEGRLFLVDKHL 46
           PYDDV +F+GR                   + ++A PVFGGD+KFL+ES G + LVD +L
Sbjct: 204 PYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVASPVFGGDKKFLIESCGEMLLVDMYL 263

Query: 47  SSTCHENXXXXXXXXXXXXXXXXLKKPVKFDVYRLDENEKMWVEVESLGDRVLFLGDVCA 106
           S    E                  ++ VKF VYR  E E+ WV+V  L D++LFLGD   
Sbjct: 264 SLEAVEGDPGFVEEIFEHPAFYMNERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDST 323

Query: 107 FSASASD-LGVGRGNCVIF-------EDY-KLKKNGVGIFPLDVGWXXXXXXXXXXXXXX 157
           FSASASD L +  G+ V F       ED   ++   +G+F    G               
Sbjct: 324 FSASASDILPLCDGSSVFFNGNVFNGEDLGAMQDRDLGVFDFRSG------KIELVQKLP 377

Query: 158 XXXRLLKPPPDWV 170
              +L  PPP W+
Sbjct: 378 EYAKLFWPPPPWI 390


>AT2G17036.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7403856-7405219 FORWARD
           LENGTH=428
          Length = 428

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 20/163 (12%)

Query: 17  IDVIAEPVFGG-DEKFLVESEGRLFLVDKHLSSTCHENXXXXXXXXXXXXXXXXLKKPVK 75
           + + A P+ GG D+KFL+ES G +FLVD      C                   +    K
Sbjct: 232 LTLAANPLIGGGDKKFLIESCGEMFLVDIEF---CLNEKPEFTGGFYSYFNETTVS--YK 286

Query: 76  FDVYRLDENEKMWVEVESLGDRVLFLGDVCAFSASASDL---GVGRGNCVIFEDYK---- 128
           F  ++L E EK WVEVE LGD++ FLGD   FSAS +D+    VG G+ V F  ++    
Sbjct: 287 FKFFKLVEREKRWVEVEDLGDKMFFLGDDSTFSASTADIIPRCVGTGSFVFFYTHEESLV 346

Query: 129 -LKKNGVGIFPLDVGWXXXXXXXXXXXXXXXXXRLLKPPPDWV 170
            +    +G+F    G                  +L  PPP W+
Sbjct: 347 VMDDRNLGVFDFRSG------KTELVNKLPEYAKLFWPPPPWI 383


>AT5G60060.1 | Symbols:  | Protein of unknown function (DUF295) |
           chr5:24188600-24189724 REVERSE LENGTH=374
          Length = 374

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 29/127 (22%)

Query: 26  GGDEKFLVE-SEGRLFLVDKHLSST-CHENXXXXXXXXXXXXXXXXLKKPVKFDVYRLDE 83
           GG +K LVE S G +FLVDK++ +  C  +                 K  V+F VY L  
Sbjct: 251 GGHKKHLVECSGGEVFLVDKYVKTVWCKSDIS---------------KSVVEFRVYNLKR 295

Query: 84  NEKMWVEVESLGDRVLFLGDVCAFSAS--ASDLGVGRGNCVIFEDYK-------LKKNGV 134
            EK W EV  LGD  LF+GD C+FS    A DL    G  + + DY+       +  +G 
Sbjct: 296 EEKRWEEVRDLGDVALFIGDDCSFSVQNPAGDLA---GGFIFYSDYRNGGRSRGICSDGD 352

Query: 135 GIFPLDV 141
           G+F +D+
Sbjct: 353 GVFNVDM 359


>AT3G25750.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr3:9400955-9402088 FORWARD
           LENGTH=348
          Length = 348

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 70  LKKPVKFDVYRLDENEKMWVEVESLGDRVLFLGDVCAFSASASDLGVGRGNCVIFEDYKL 129
           +++ V F VY++DE+   WVEV  LGD  L +     F+  AS+      N + F  Y +
Sbjct: 251 IQRTVGFKVYKMDEDLAKWVEVSCLGDNTLIVACNSCFTVVASEYHGCLKNSIYFSYYDV 310

Query: 130 KK-NGVGIFPLDVG 142
           KK   + +F LD G
Sbjct: 311 KKAENIKVFKLDDG 324