Miyakogusa Predicted Gene

Lj3g3v2188170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2188170.1 Non Chatacterized Hit- tr|G7JGZ0|G7JGZ0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,70.73,1e-17,seg,NULL,CUFF.43654.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15780.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    45   1e-05

>AT3G15780.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G52550.1); Has 20 Blast hits to 20 proteins in
           5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:5341434-5342351 FORWARD
           LENGTH=117
          Length = 117

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query: 75  SLSKLQDRVQIFFAVLFWMSLFFWASAWDG 104
           +++++QDRV+IF AV FWM LFFW +  DG
Sbjct: 75  AVTRVQDRVKIFLAVFFWMFLFFWVTVTDG 104