Miyakogusa Predicted Gene

Lj3g3v2187020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2187020.1 Non Chatacterized Hit- tr|I3SFH5|I3SFH5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.28,0,seg,NULL,CUFF.43653.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15840.1 | Symbols: PIFI | post-illumination chlorophyll fluo...   342   1e-94
AT3G15840.5 | Symbols: PIFI | post-illumination chlorophyll fluo...   338   2e-93
AT3G15840.3 | Symbols: PIFI | post-illumination chlorophyll fluo...   337   5e-93
AT3G15840.2 | Symbols: PIFI | post-illumination chlorophyll fluo...   330   5e-91
AT3G15840.4 | Symbols: PIFI | post-illumination chlorophyll fluo...   325   3e-89

>AT3G15840.1 | Symbols: PIFI | post-illumination chlorophyll
           fluorescence increase | chr3:5356782-5358418 REVERSE
           LENGTH=268
          Length = 268

 Score =  342 bits (878), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/273 (62%), Positives = 206/273 (75%), Gaps = 9/273 (3%)

Query: 2   AATNASIFASSTTQPCLPIRIPNTLASTFLNVSLPRCYLVKERNVKVTRTINAAVAVATT 61
           AA N S   +S +QP    R  + L S+ +   L R +  K+ +++V      AVA    
Sbjct: 3   AAANTSAVFASPSQPLSSKR--SFLYSSRIGPILRR-FPRKKLDLQVK-----AVATTLA 54

Query: 62  PAQEIEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNEEFGIAF 121
           P +EI+EYK+PSWA FE+G A VYWKTMNGLPPTSGEKLKLFYNP +++L  NE++G+AF
Sbjct: 55  PLEEIKEYKLPSWAMFEMGTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAF 114

Query: 122 NGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWDGPYRLQ 181
           NGGFNQPIMCGGEPRAML+KDRGKAD+PIY++QIC+PKHA+NLIFSFTNGVDWDGPYRLQ
Sbjct: 115 NGGFNQPIMCGGEPRAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQ 174

Query: 182 FQVPKVLQNKPIEFFNXXXXXXXXXXXXXXQAIFPDSNKVITKCAMLGNLTVEGGDRCDL 241
           FQVPK  QNKPIEFFN              +AIFPDSN V T+C M+ NLTVEGGDRC+L
Sbjct: 175 FQVPKRWQNKPIEFFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNL 234

Query: 242 NLVEGCTDPSSHLYNPLANVDDGTCPLDL-DSD 273
           +LV GC D +S  +NP ANVDDG+CPL+L DSD
Sbjct: 235 DLVPGCMDTNSEHFNPYANVDDGSCPLELSDSD 267


>AT3G15840.5 | Symbols: PIFI | post-illumination chlorophyll
           fluorescence increase | chr3:5356782-5358265 REVERSE
           LENGTH=248
          Length = 248

 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 155/221 (70%), Positives = 180/221 (81%)

Query: 55  AVAVATTPAQEIEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPN 114
           AVA    P +EI+EYK+PSWA FE+G A VYWKTMNGLPPTSGEKLKLFYNP +++L  N
Sbjct: 28  AVATTLAPLEEIKEYKLPSWAMFEMGTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLN 87

Query: 115 EEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDW 174
           E++G+AFNGGFNQPIMCGGEPRAML+KDRGKAD+PIY++QIC+PKHA+NLIFSFTNGVDW
Sbjct: 88  EDYGVAFNGGFNQPIMCGGEPRAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDW 147

Query: 175 DGPYRLQFQVPKVLQNKPIEFFNXXXXXXXXXXXXXXQAIFPDSNKVITKCAMLGNLTVE 234
           DGPYRLQFQVPK  QNKPIEFFN              +AIFPDSN V T+C M+ NLTVE
Sbjct: 148 DGPYRLQFQVPKRWQNKPIEFFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVE 207

Query: 235 GGDRCDLNLVEGCTDPSSHLYNPLANVDDGTCPLDLDSDSE 275
           GGDRC+L+LV GC D +S  +NP ANVDDG+CPL+L    E
Sbjct: 208 GGDRCNLDLVPGCMDTNSEHFNPYANVDDGSCPLELSDSDE 248


>AT3G15840.3 | Symbols: PIFI | post-illumination chlorophyll
           fluorescence increase | chr3:5356782-5358418 REVERSE
           LENGTH=268
          Length = 268

 Score =  337 bits (864), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 169/273 (61%), Positives = 205/273 (75%), Gaps = 9/273 (3%)

Query: 2   AATNASIFASSTTQPCLPIRIPNTLASTFLNVSLPRCYLVKERNVKVTRTINAAVAVATT 61
           AA N S   +S +QP    R  + L S+ +   L R +  K+ +++V      AVA    
Sbjct: 3   AAANTSAVFASPSQPLSSKR--SFLYSSRIGPILRR-FPRKKLDLQVK-----AVATTLA 54

Query: 62  PAQEIEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNEEFGIAF 121
           P +EI+EYK+PSWA FE+G A VYWKTMNGLPPTSGEKLKLFYNP +++L  NE++G+AF
Sbjct: 55  PLEEIKEYKLPSWAMFEMGTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAF 114

Query: 122 NGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWDGPYRLQ 181
           NGGFNQPIMCGGEPRAML+KDRGKAD+PIY++QIC+PKHA+NLIFSFTNGVDWDGPYRLQ
Sbjct: 115 NGGFNQPIMCGGEPRAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQ 174

Query: 182 FQVPKVLQNKPIEFFNXXXXXXXXXXXXXXQAIFPDSNKVITKCAMLGNLTVEGGDRCDL 241
           FQVPK  QNKPIEFFN              +AIFPDSN V T+C M+ NLTVEG +RC+L
Sbjct: 175 FQVPKRWQNKPIEFFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGVNRCNL 234

Query: 242 NLVEGCTDPSSHLYNPLANVDDGTCPLDL-DSD 273
           +LV GC D +S  +NP ANVDDG+CPL+L DSD
Sbjct: 235 DLVPGCMDTNSEHFNPYANVDDGSCPLELSDSD 267


>AT3G15840.2 | Symbols: PIFI | post-illumination chlorophyll
           fluorescence increase | chr3:5356782-5358418 REVERSE
           LENGTH=265
          Length = 265

 Score =  330 bits (847), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 168/273 (61%), Positives = 203/273 (74%), Gaps = 12/273 (4%)

Query: 2   AATNASIFASSTTQPCLPIRIPNTLASTFLNVSLPRCYLVKERNVKVTRTINAAVAVATT 61
           AA N S   +S +QP    R  + L S+ +   L R +  K+ +++V      AVA    
Sbjct: 3   AAANTSAVFASPSQPLSSKR--SFLYSSRIGPILRR-FPRKKLDLQVK-----AVATTLA 54

Query: 62  PAQEIEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNEEFGIAF 121
           P +EI+EYK+PSWA FE+G A VYWKTMNGLPPTS   LKLFYNP +++L  NE++G+AF
Sbjct: 55  PLEEIKEYKLPSWAMFEMGTAPVYWKTMNGLPPTS---LKLFYNPAASKLTLNEDYGVAF 111

Query: 122 NGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWDGPYRLQ 181
           NGGFNQPIMCGGEPRAML+KDRGKAD+PIY++QIC+PKHA+NLIFSFTNGVDWDGPYRLQ
Sbjct: 112 NGGFNQPIMCGGEPRAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQ 171

Query: 182 FQVPKVLQNKPIEFFNXXXXXXXXXXXXXXQAIFPDSNKVITKCAMLGNLTVEGGDRCDL 241
           FQVPK  QNKPIEFFN              +AIFPDSN V T+C M+ NLTVEGGDRC+L
Sbjct: 172 FQVPKRWQNKPIEFFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNL 231

Query: 242 NLVEGCTDPSSHLYNPLANVDDGTCPLDL-DSD 273
           +LV GC D +S  +NP ANVDDG+CPL+L DSD
Sbjct: 232 DLVPGCMDTNSEHFNPYANVDDGSCPLELSDSD 264


>AT3G15840.4 | Symbols: PIFI | post-illumination chlorophyll
           fluorescence increase | chr3:5356782-5358070 REVERSE
           LENGTH=214
          Length = 214

 Score =  325 bits (832), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 172/210 (81%)

Query: 66  IEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNEEFGIAFNGGF 125
            + YK+PSWA FE+G A VYWKTMNGLPPTSGEKLKLFYNP +++L  NE++G+AFNGGF
Sbjct: 5   FDRYKLPSWAMFEMGTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAFNGGF 64

Query: 126 NQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWDGPYRLQFQVP 185
           NQPIMCGGEPRAML+KDRGKAD+PIY++QIC+PKHA+NLIFSFTNGVDWDGPYRLQFQVP
Sbjct: 65  NQPIMCGGEPRAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQFQVP 124

Query: 186 KVLQNKPIEFFNXXXXXXXXXXXXXXQAIFPDSNKVITKCAMLGNLTVEGGDRCDLNLVE 245
           K  QNKPIEFFN              +AIFPDSN V T+C M+ NLTVEGGDRC+L+LV 
Sbjct: 125 KRWQNKPIEFFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNLDLVP 184

Query: 246 GCTDPSSHLYNPLANVDDGTCPLDLDSDSE 275
           GC D +S  +NP ANVDDG+CPL+L    E
Sbjct: 185 GCMDTNSEHFNPYANVDDGSCPLELSDSDE 214