Miyakogusa Predicted Gene

Lj3g3v2172690.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2172690.2 tr|C1EGP2|C1EGP2_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_63943
,32.34,1e-18,seg,NULL; RNI-like,NULL; L domain-like,NULL; Leucine-rich
repeat - CC (cysteine-containin,Leucine-ri,CUFF.43609.2
         (380 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15740.1 | Symbols:  | Leucine-rich repeat family protein | c...   411   e-115
AT4G23840.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...    68   9e-12

>AT1G15740.1 | Symbols:  | Leucine-rich repeat family protein |
           chr1:5411509-5414544 FORWARD LENGTH=585
          Length = 585

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/381 (63%), Positives = 277/381 (72%), Gaps = 1/381 (0%)

Query: 1   MSTFSGLVNLVKLDLERCPRIHGGLVHLQGLTKLESLNIKWCNCITDSDMKPLSELASLT 60
           M   S LVNL KLDLE+CP I GGLVHL+ LTKLESLNIKWCNCITD+DM+PLS L +L 
Sbjct: 205 MRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLR 264

Query: 61  SLEISCSKVTDFGITFXXXXXXXXXXXXEGCL-VTAACLDSLAELPSLSNLNLNRCALSD 119
           SL+I CSK+TD GI++            EGC  VTAACLD+L  L  L  LNLNRC  SD
Sbjct: 265 SLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSD 324

Query: 120 DGCEKFSRLENLKVLNLGFSDIGDTCLAHLKGLTKLESLNLDSCKIGDEGLVNLAGHKQL 179
            GCEKFS L NLK+LNLG ++I ++CL HLKGLTKLESLNLDSC+IGDEGLV+L+G  +L
Sbjct: 325 SGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLEL 384

Query: 180 ICLELSDTEVXXXXXXXXXXXXXXXKINLSFTVISDXXXXXXXXXXXXXXXNLDAYQITD 239
             LELSDTEV                INLSFTV++D               NLDA  +TD
Sbjct: 385 KSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHVTD 444

Query: 240 VXXXXXXXXXXXXXXXXFGARITDLGTNYLKKFKNLRSLEICGGGLTDSGVKNIKDLSSL 299
                            FGARITD GTN+L+  K L+SLEICGGGLTD+GVKNIKDLSSL
Sbjct: 445 AGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLSSL 504

Query: 300 TCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLKNLRSLTLESCKVT 359
           T LNLSQNSNLTDKTLELISGLTGL+SLNVSNSR++++GLRHLK LKNLRSLTLESCK++
Sbjct: 505 TLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCKLS 564

Query: 360 ANDIKKLKSTYLPNLACFRPE 380
           ANDI+KL++T LPNL  FRPE
Sbjct: 565 ANDIRKLQATDLPNLVNFRPE 585


>AT4G23840.1 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr4:12400379-12403190 FORWARD LENGTH=597
          Length = 597

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 8/183 (4%)

Query: 1   MSTFSGLVNLVKLDLERCPRIHGG-LVHLQGLTKLESLNIKWCNCITDSDMKPLSELASL 59
           M+   G VNL+ L+L  C RI+   L  + GLT L  L++  C  +TD+ MK L  + +L
Sbjct: 79  MAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVTDAGMKHLQSVVNL 138

Query: 60  TSLEISCSKVTDFGITFXXXXXXXXXXXXEGCLVTAACLDSLAELPSLSNLNLNRCALSD 119
             L IS + VT+ GI+              G  VT   L SL  L  L  L++    +++
Sbjct: 139 KKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTKLEYLDIWGSNVTN 198

Query: 120 DGCEKFSRLENLKVLNLGFSDIGDTCLAHLKGLTKLESLNLDSCKIGDEGLVN--LAGHK 177
            G     +  NL  LNL ++ I  T       +  LE L++++C I  E   +  LA  K
Sbjct: 199 QGAVSILKFSNLSFLNLSWTSITQT-----PNIPHLECLHMNTCTIVSEPKTHSSLASLK 253

Query: 178 QLI 180
           +L+
Sbjct: 254 KLV 256