Miyakogusa Predicted Gene

Lj3g3v2171540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2171540.1 tr|C1E986|C1E986_MICSR 30S ribosomal protein S15
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPU,43.48,2e-16,Ribosomal_S15,Ribosomal protein S15; S15/NS1
RNA-binding domain,S15/NS1, RNA-binding; seg,NULL; no d,CUFF.43599.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80620.1 | Symbols:  | S15/NS1, RNA-binding protein | chr1:30...   226   6e-60
AT1G15810.1 | Symbols:  | S15/NS1, RNA-binding protein | chr1:54...   226   6e-60

>AT1G80620.1 | Symbols:  | S15/NS1, RNA-binding protein |
           chr1:30305404-30307182 FORWARD LENGTH=414
          Length = 414

 Score =  226 bits (577), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 102/128 (79%), Positives = 115/128 (89%)

Query: 37  LQRIDMLGLLGGTPDYLLKPPKEHLVEKYFHPDNLSSAEKLKIELTKVRDEFKMSESDCG 96
            Q  ++ G+L GTP Y+L+PPK+ LVE YFHPDN+SSAEK+KIEL KVR+EFKMSESDCG
Sbjct: 285 FQNTNIWGVLSGTPKYMLEPPKDQLVETYFHPDNMSSAEKMKIELAKVREEFKMSESDCG 344

Query: 97  SARVQVAQLTTKIKHLSSVLHKKDVHSRKGLVAMVQKRKSLLKYLRRTDWDSYCFVISKL 156
           SARVQVAQLTTKIKHLSSVLHKKD HSRKGL+AMVQ+RK LLKY+RRTDWDSYC  +SKL
Sbjct: 345 SARVQVAQLTTKIKHLSSVLHKKDKHSRKGLIAMVQRRKKLLKYMRRTDWDSYCLSLSKL 404

Query: 157 GLRDNPDY 164
           GLRDNPDY
Sbjct: 405 GLRDNPDY 412


>AT1G15810.1 | Symbols:  | S15/NS1, RNA-binding protein |
           chr1:5444496-5446271 FORWARD LENGTH=419
          Length = 419

 Score =  226 bits (577), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 119/137 (86%)

Query: 28  KDEKSKKPSLQRIDMLGLLGGTPDYLLKPPKEHLVEKYFHPDNLSSAEKLKIELTKVRDE 87
           K+E S+  S Q + ++G LGG P+Y L PPKE LV+ YFHPDN+SSAEK+KIEL+KVR+E
Sbjct: 281 KNENSEASSQQNVAIMGHLGGIPEYKLLPPKEDLVDTYFHPDNMSSAEKMKIELSKVREE 340

Query: 88  FKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDVHSRKGLVAMVQKRKSLLKYLRRTDWD 147
           FKMSESDCGSARVQVAQLTTKIKHLSS LHKKD HSRKGL+ MVQKRK LLKYLRRTDWD
Sbjct: 341 FKMSESDCGSARVQVAQLTTKIKHLSSSLHKKDKHSRKGLLGMVQKRKKLLKYLRRTDWD 400

Query: 148 SYCFVISKLGLRDNPDY 164
           SYC V+SKL LRDNPDY
Sbjct: 401 SYCLVLSKLSLRDNPDY 417