Miyakogusa Predicted Gene

Lj3g3v2097070.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2097070.1 Non Chatacterized Hit- tr|A5B848|A5B848_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.48,0.0000000003,DUF1995,Domain of unknown function DUF1995;
seg,NULL,CUFF.43577.1
         (380 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73060.1 | Symbols: LPA3 | Low  PSII Accumulation 3 | chr1:27...   541   e-154
AT5G48790.1 | Symbols:  | Domain of unknown function (DUF1995) |...    57   2e-08

>AT1G73060.1 | Symbols: LPA3 | Low  PSII Accumulation 3 |
           chr1:27479027-27481258 FORWARD LENGTH=358
          Length = 358

 Score =  541 bits (1394), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/379 (70%), Positives = 301/379 (79%), Gaps = 22/379 (5%)

Query: 3   LSMAISSLPHNSTFLHPLAQFHSPSPSSSQTLRNLPFRLTTRIQSVGVGREA-ASSQPGS 61
           ++MAI+ LP         A F SPS             LT+RI+         A S   S
Sbjct: 1   MAMAIAMLP---------ALFSSPSI------------LTSRIRCGATANSGGAISSTSS 39

Query: 62  GPDPKAGVSLYKPKSYEVLVTDAAKSLALALQDGTLRLEIDFPPLPXXXXXXXXXXDDFI 121
             DP+ GV LYKPKSYEVL TDAA SLA ALQD   RLEIDFPPLP          DDFI
Sbjct: 40  NSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFI 99

Query: 122 DANIQLALAVVRKLQEKKETRACIVFPDKPEKRRASELFKAAMDSIDGITIGSLDDVPGG 181
           DANIQLA+ VVRKLQEK ETRACIVFPDKPEKRRAS+ FKAA DS+DGI+IGSLDD+PG 
Sbjct: 100 DANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDDIPGT 159

Query: 182 PMTSFFRSVRSTLDFDFEDENEGRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPSTPA 241
            +T+FFRS+RSTLDFDFEDENEG W+  EPP+LYIFINCSTREL +IEK+VE FA STPA
Sbjct: 160 SVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFASSTPA 219

Query: 242 LLFNLELDTLRADLGLLGFPPKDLHYRFLSQFTPVFYIRIRDYSKTVAIAPYIVNYSGAV 301
           LLFNLELDTLRADLGLLGFPPKDLHYRFLSQF PVFYIR R+YSKTVA+AP+++NY+GA+
Sbjct: 220 LLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGAL 279

Query: 302 FRQYPGPWQVMLKQADGSFACIAESATRFTLGEAKEELLRVLGLQEEEGSSLQFLRRGYK 361
           FRQYPGPWQVMLKQ DGSFAC+AES TRFTLGE KEELL+VLGLQEE+GSSL+FLRRGYK
Sbjct: 280 FRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYK 339

Query: 362 ASTWWEEDSDLELSSAWRN 380
           ++TWWEED +LE SS WRN
Sbjct: 340 SATWWEEDVELEASSNWRN 358


>AT5G48790.1 | Symbols:  | Domain of unknown function (DUF1995) |
           chr5:19780010-19781977 REVERSE LENGTH=316
          Length = 316

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 140/333 (42%), Gaps = 59/333 (17%)

Query: 20  LAQFHSPSPSSSQTLRNLPFRLTTRIQSVGVGREAASSQPGSGPDPKAGVSLYKPKSYEV 79
           L   HS +   ++T RNL FR              A S  G   +  +  ++  P+ Y  
Sbjct: 28  LCSLHSKNNDITKTNRNLKFR--------------ACSVSGGYNNNTSVDNVPFPRDYVE 73

Query: 80  LVTDAAKSLALALQDGTLRLEIDFPPLPXXXXXXXXXXDDFIDANIQLALAVVRKLQEKK 139
           L+  A +++ +AL+D    +EI+FP                +  +I +      +L   +
Sbjct: 74  LINQAKEAVEMALKDEKQLMEIEFPTSGLASVPGDGEGATEMTESINMIREFCDRLLAPE 133

Query: 140 ETRAC-IVFPDKPEKRRASE-LFKAAMDSIDGITIGSLDDVPGGPMTSFFRSVRSTLDFD 197
           + R+  I FP+  E + A + +F      +D +T  SL +  G     FF  V+      
Sbjct: 134 KARSTRIFFPEANEVKFAQKTVFGGTYFKLDYLTKPSLFEDFG-----FFERVKMADRVK 188

Query: 198 FEDENEGRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPST--PALLFNLELDTLRADL 255
            EDE    +  + P   Y  +N    E+  +E+  ++   +T    ++FN ELD +R+  
Sbjct: 189 PEDE---LFLVAYP---YFNVN----EMLVVEELYKEAVVNTDRKLIIFNGELDRIRS-- 236

Query: 256 GLLGFPPKDLHYRFLSQFTPVFYIRIRDYSKT----VAIAPYIVNYSG----AVFRQYPG 307
              G+ PK             FY ++   +KT    +    YI N+ G     +FR YPG
Sbjct: 237 ---GYYPK------------FFYPKLAALTKTLLPKMETVYYIHNFKGQKGGVLFRCYPG 281

Query: 308 PWQVMLKQADGSFACIAESATRFTLGEAKEELL 340
           PWQV L++    + C+ +  +  +L E   ++L
Sbjct: 282 PWQV-LRRTRNKYICVHQQESMPSLKEVALDIL 313