Miyakogusa Predicted Gene

Lj3g3v2096000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2096000.1 tr|B7FGJ2|B7FGJ2_MEDTR Ribosomal protein L34
OS=Medicago truncatula PE=2
SV=1,59.52,0.000000000000005,seg,NULL,83303_g.1
         (84 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13882.1 | Symbols:  | Ribosomal protein L34 | chr3:4574600-4...    47   4e-06

>AT3G13882.1 | Symbols:  | Ribosomal protein L34 |
          chr3:4574600-4575852 FORWARD LENGTH=147
          Length = 147

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 13/94 (13%)

Query: 1  MASKTLLRSGSTLLNRF----------SNSKSXXXXXXXXXXXXXQLFQIPTLSKPTSSP 50
          MA+KTL+RSG++L+NRF          +N +S               F  P+LS   SS 
Sbjct: 1  MAAKTLIRSGASLMNRFLTKPTTNIVQNNLRSSFQYIAPQGQEIPPYF-FPSLSNLQSSL 59

Query: 51 QNDADSPSKL--LASQGFLYPCGLPDLSFFLPQA 82
           +  +  + L  L  +GFLYP GLP L FFLP+ 
Sbjct: 60 ISRPNDTASLQELNERGFLYPSGLPSLEFFLPEV 93