Miyakogusa Predicted Gene

Lj3g3v2074860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2074860.1 tr|B9HZ13|B9HZ13_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_567987 PE=4
SV=1,25.74,0.00000000000008,seg,NULL; F-box domain,F-box domain,
cyclin-like; no description,NULL; FAMILY NOT NAMED,NULL;
F-box,,CUFF.43551.1
         (379 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19630.1 | Symbols:  | F-box and associated interaction domai...    52   8e-07
AT2G19630.2 | Symbols:  | F-box and associated interaction domai...    52   9e-07
AT2G16220.1 | Symbols:  | F-box and associated interaction domai...    50   2e-06
AT3G57590.1 | Symbols:  | F-box and associated interaction domai...    50   3e-06
AT1G33020.1 | Symbols:  | F-box and associated interaction domai...    48   1e-05

>AT2G19630.1 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr2:8490217-8491110
          REVERSE LENGTH=297
          Length = 297

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 20 DLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITR 60
          DL++EIF+RL   SIA C+C SK+W   +S P F + F+TR
Sbjct: 20 DLIIEIFLRLSVNSIARCRCVSKQWASTLSRPYFTELFLTR 60


>AT2G19630.2 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr2:8490217-8491110
          REVERSE LENGTH=218
          Length = 218

 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 20 DLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITR 60
          DL++EIF+RL   SIA C+C SK+W   +S P F + F+TR
Sbjct: 20 DLIIEIFLRLSVNSIARCRCVSKQWASTLSRPYFTELFLTR 60


>AT2G16220.1 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr2:7030155-7031378
          REVERSE LENGTH=407
          Length = 407

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 13 NINHFSDDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQN 62
          N +  ++DL++E+  RLP +S+A   C SKRW  +  SP F + F+TR +
Sbjct: 2  NSHFLTNDLILEVLSRLPLKSVARFHCVSKRWASMFGSPYFKELFLTRSS 51


>AT3G57590.1 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr3:21330182-21331396
          REVERSE LENGTH=404
          Length = 404

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 19 DDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQNN 63
          +DL++EIF RLP +S+ G +  SK W  ++ SP+F + F+TR +N
Sbjct: 6  NDLILEIFSRLPAKSVIGFRTLSKHWASMLRSPVFTELFLTRSSN 50


>AT1G33020.1 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr1:11962746-11964832
          FORWARD LENGTH=548
          Length = 548

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 12 SNINHFSDDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQNN 63
           N++    DL++EIF R+  +SI  C+C SK W  ++  P F + F+TR ++
Sbjct: 5  ENLDSIPTDLILEIFSRMSTKSIGRCRCVSKLWKSMLGHPYFTELFLTRSSD 56