Miyakogusa Predicted Gene
- Lj3g3v2062690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2062690.1 Non Chatacterized Hit- tr|D7M093|D7M093_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,42.75,4e-18,seg,NULL,CUFF.43552.1
(255 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 267 6e-72
AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 261 3e-70
AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 120 8e-28
AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 117 9e-27
>AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes -
6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD
LENGTH=466
Length = 466
Score = 267 bits (682), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 132/222 (59%), Positives = 158/222 (71%), Gaps = 24/222 (10%)
Query: 31 NFPGTVLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGCLKNKIEIPWSDIMALKANY 90
NFP T+L+IG WEYKSRYEGDLVAKCYFAKHKLVWEVL+ LK+KIEI WSDIMALKAN
Sbjct: 113 NFPATILRIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANL 172
Query: 91 PEDAPGTLEVVLARRPLFFREINPQPRKHTLWQATSDFTGGQASIQRRHFMQCPQGLLGK 150
PED PGTL +VLARRPLFFRE NPQPRKHTLWQATSDFT GQAS+ R+HF+QCP G++ K
Sbjct: 173 PEDEPGTLTIVLARRPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCPPGIMNK 232
Query: 151 HFEKLIQCDPRLNFLSQQPELVLESPYFESGTAIHDHIESSDGFDSKSEEQPSLFGLHEV 210
HFEKL+QCD RL LS+QPE+ L +P+F+S +I E PS+ G H +
Sbjct: 233 HFEKLVQCDHRLFCLSRQPEINLAAPFFDSRLSIF--------------EDPSVSGSHNI 278
Query: 211 EXXXXXXXXXXXXEHNLMGKAVENVSQEITSPSTVMNSHAIK 252
EH ++S + SPS+VM++ AI+
Sbjct: 279 ---ASPVGAQSSSEH-------VSLSHDALSPSSVMDARAIE 310
>AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1;
Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes -
13 (source: NCBI BLink). | chr4:14990523-14992855
FORWARD LENGTH=589
Length = 589
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 118/163 (72%), Positives = 138/163 (84%)
Query: 31 NFPGTVLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGCLKNKIEIPWSDIMALKANY 90
NFP ++LKIG WEYKSRYEGDLVAKCYFAKHKLVWEVL+ LK+KIEI WSDIMALKAN
Sbjct: 140 NFPASLLKIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANC 199
Query: 91 PEDAPGTLEVVLARRPLFFREINPQPRKHTLWQATSDFTGGQASIQRRHFMQCPQGLLGK 150
PED PGTL +VLAR+PLFFRE NPQPRKHTLWQATSDFT GQAS+ R+HF+QC QG++ K
Sbjct: 200 PEDGPGTLTLVLARQPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCAQGIMNK 259
Query: 151 HFEKLIQCDPRLNFLSQQPELVLESPYFESGTAIHDHIESSDG 193
HFEKL+QCD RL LS+QPE+ ++SPYF++ +I + S G
Sbjct: 260 HFEKLVQCDHRLFHLSRQPEIAIDSPYFDARQSIFEDPSESKG 302
>AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G05770.1); Has 107 Blast hits to 107 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes -
13 (source: NCBI BLink). | chr1:20270810-20272009
FORWARD LENGTH=314
Length = 314
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 93/160 (58%), Gaps = 10/160 (6%)
Query: 31 NFPGTVLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDG-------CLKNKIEIPWSDI 83
NFP + ++IG W ++ D+VAK YFAK KL+WE L G LK KIEI W+D+
Sbjct: 2 NFPISTIRIGGWVVVAKNPDDIVAKFYFAKKKLIWEFLFGEPETNTLRLKRKIEIQWNDV 61
Query: 84 MALKANY-PEDAPGTLEVVLARRPLFFREINPQPRKHTLW-QATSDFTGGQASIQRRHFM 141
+ + + D G L++ L +RP FF E NPQ KHT W Q DFTG AS RRH +
Sbjct: 62 SSFEESISSRDETGILKIELKKRPTFFIETNPQAGKHTQWKQLDHDFTGDHASNYRRHTL 121
Query: 142 QCPQGLLGKHFEKLIQCDPRLNFLSQQPELVLESPYFESG 181
P G+L K+ EKL+ D + L + P V ES YF+SG
Sbjct: 122 HFPPGVLQKNLEKLV-TDSFWSKLYEVPFPVHESRYFDSG 160
>AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G54300.1); Has 105 Blast hits to 105 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes -
6 (source: NCBI BLink). | chr3:1710328-1712165 REVERSE
LENGTH=410
Length = 410
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 94/160 (58%), Gaps = 10/160 (6%)
Query: 31 NFPGTVLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDG-------CLKNKIEIPWSDI 83
NFP + +KIG + ++ D+VAK YFAK KL+WE L G LK+KIEI W+D+
Sbjct: 75 NFPISTIKIGDCVFVAKNPDDIVAKFYFAKKKLLWEFLFGEPVANMPRLKSKIEIQWNDV 134
Query: 84 MALKANY-PEDAPGTLEVVLARRPLFFREINPQPRKHTLW-QATSDFTGGQASIQRRHFM 141
+ + + D G L++ L +RP FF E NPQ KHT W Q DFTG QAS RRH +
Sbjct: 135 SSFEESINSRDETGILKIELKKRPTFFTETNPQAGKHTQWKQLDYDFTGDQASYYRRHTL 194
Query: 142 QCPQGLLGKHFEKLIQCDPRLNFLSQQPELVLESPYFESG 181
P G+L K+ EKL+ D + L + P V ES YF+ G
Sbjct: 195 HFPPGVLQKNLEKLL-TDSFWSKLYKVPFPVHESLYFDIG 233