Miyakogusa Predicted Gene

Lj3g3v2059600.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2059600.1 tr|B9GLP9|B9GLP9_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_639740
PE=4,58.11,0.000000000000002,seg,NULL,CUFF.43547.1
         (242 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16080.1 | Symbols:  | unknown protein; LOCATED IN: apoplast,...   372   e-103

>AT1G16080.1 | Symbols:  | unknown protein; LOCATED IN: apoplast,
           chloroplast stroma, chloroplast, chloroplast envelope;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
           growth stages; Has 81 Blast hits to 81 proteins in 28
           species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi -
           0; Plants - 62; Viruses - 0; Other Eukaryotes - 17
           (source: NCBI BLink). | chr1:5514394-5515761 FORWARD
           LENGTH=313
          Length = 313

 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 194/228 (85%)

Query: 15  VPLEFEGPILVCTRNDDLDSVLQSTPPSRWNDLVFFQNGMLDPWLQSKGLSDANQVLAYF 74
           VP++FEGPILVCTRNDDLD+VL++TP SRW DLVFFQNGM++PW +SKGL D +QVLAYF
Sbjct: 86  VPVDFEGPILVCTRNDDLDAVLEATPQSRWKDLVFFQNGMMEPWFESKGLGDTDQVLAYF 145

Query: 75  AVSKLGETPIDGKTDTNPEGLTAAYGKWASVVSARLHAGGLSCKVLDKEAFQKQMLEKLI 134
           AVSKLGE P+DGKTDTNPEGLTAAYGKWAS ++ARL +GGLSCKVLDKEAFQKQMLEKLI
Sbjct: 146 AVSKLGEPPVDGKTDTNPEGLTAAYGKWASEIAARLQSGGLSCKVLDKEAFQKQMLEKLI 205

Query: 135 WICSVMLVGARHGGVSVGNVEKEFHXXXXXXXXXXXXXXXXXKGLTFEEGMEDRMCAYSR 194
           WIC+ MLVGARH G SVG VEKE+                  KGLTFEE M +R+CAYSR
Sbjct: 206 WICAFMLVGARHPGASVGTVEKEYRDEVSRLIQELAAAAAAEKGLTFEENMVERLCAYSR 265

Query: 195 AVAHFPTAVKEFKWRNGWFYSLSEKATAQGKQDPCPLHTQWLKELKIV 242
           AV+HFPTAVKEFKWRNGWFYSLSEKA A+G+ DPCPLHT+WLKELK++
Sbjct: 266 AVSHFPTAVKEFKWRNGWFYSLSEKAIAEGQPDPCPLHTEWLKELKVI 313