Miyakogusa Predicted Gene
- Lj3g3v2057520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2057520.1 Non Chatacterized Hit- tr|I1M2M6|I1M2M6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.51756 PE,31.03,5e-18,K
homology RNA-binding domain,K Homology domain; no description,NULL;
KH_1,K Homology domain, type 1,CUFF.43531.1
(418 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 310 1e-84
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 199 2e-51
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 199 2e-51
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 161 9e-40
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 157 1e-38
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 145 4e-35
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 145 5e-35
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 145 5e-35
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 134 9e-32
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 134 9e-32
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 134 1e-31
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 134 2e-31
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 133 2e-31
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 131 7e-31
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 119 4e-27
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 94 2e-19
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 84 1e-16
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 62 5e-10
AT5G53060.2 | Symbols: | RNA-binding KH domain-containing prote... 61 1e-09
AT1G33680.1 | Symbols: | KH domain-containing protein | chr1:12... 55 1e-07
AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (lon... 50 2e-06
AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (lon... 49 7e-06
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 195/441 (44%), Positives = 261/441 (59%), Gaps = 79/441 (17%)
Query: 21 FRILCPAAAKTADLLGLAGDGVNIHVDDFGGG------------DDRLVTIVG------- 61
FR+LCPA +T ++G G + H+ G ++R+V I+
Sbjct: 21 FRLLCPAT-RTGAIIGKGGSVIR-HLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKD 78
Query: 62 -----AAEHPAS--------------CGGDE----SPARLALIRVFERMV---------E 89
+E+P S GGD+ S A++AL+RVFER+V
Sbjct: 79 ESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGDDAATVDG 138
Query: 90 EESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQ-PPLPSPGDE 148
+E S C ++ QV ++ +GGK +KIR++SGA VR+ DQ PP PGD
Sbjct: 139 DELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDV 198
Query: 149 FIQITGNFNVVKKALLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGE-PYPQR 207
IQ+ G F+ VKKALL V++CL + SGA PP E P+PQ
Sbjct: 199 VIQMNGKFSSVKKALLLVTNCL--------QESGA-------------PPTWDECPFPQP 237
Query: 208 GYAPGPYGPDHHPRGYSPFPGP--ESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSG 265
GY P + ++HP+ P P P E GP +R VEEEV F+LLC DKVGSLIGKGG+
Sbjct: 238 GYPPEYHSMEYHPQWDHPPPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAV 297
Query: 266 VRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQS 325
VRALQNE+GASI++ + DS+ER+IVIS REN +++HS AQ+ + RVH R+ EIGFE S
Sbjct: 298 VRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPS 357
Query: 326 NAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQ-IKYIPQNEEVVQVTGT 384
AV ARLLV SP +G LLGKGGH+ISEMRRATGASIR+F+K+Q KY Q++E+VQV G
Sbjct: 358 AAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGN 417
Query: 385 LQSVRDALFHITSKIREIIFP 405
L++V+DALF I ++RE +FP
Sbjct: 418 LKTVQDALFQILCRLREAMFP 438
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 97/231 (41%), Gaps = 28/231 (12%)
Query: 18 ETVFRILCPAAAKTADLLGLAG---------DGVNIHVDDFGGGDDRLVTIVGAAEHPAS 68
E FR+LCPA K L+G G G +I V D + + ++ A E+
Sbjct: 275 EVAFRLLCPAD-KVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Query: 69 CGGDESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQES 128
S A+ ++RV R+VE S + VA LV Y +G +LG+GG ++R+ +
Sbjct: 334 ---RHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPY-IGRLLGKGGHLISEMRRAT 389
Query: 129 GAQVRVLPKDQP-PLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHA----RMDAENSGA 183
GA +RV KDQ S DE +Q+ GN V+ AL + C L A R+ + G
Sbjct: 390 GASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQIL-CRLREAMFPGRLPFQGMGG 448
Query: 184 FVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHHPRGYSPFPGPESAGP 234
P G PP YP PD + PF GP
Sbjct: 449 PPPPFMGPYPEPPPPFGPRQYPA--------SPDRYHSPVGPFHERHCHGP 491
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 225/414 (54%), Gaps = 42/414 (10%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVNIHVDD----------FGGGDDRLVTIVGAAEHPA 67
+TVFR LCP K ++G GD V +D G D+R++TI ++
Sbjct: 49 DTVFRYLCPVK-KIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETN 107
Query: 68 SCGGDE---SPARLALIRVFERMVEEESTTSNS-----AVACTLVAPSYQVGSILGRGGK 119
+ G E SPA+ AL R+ +R+V +++ + +S V L+ PS Q+G ILGRGG+
Sbjct: 108 AFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQ 167
Query: 120 FAEKIRQESGAQVRVLPKDQPPLPS-PGDEFIQITGNFNVVKKALLSVSSCLLDH---AR 175
+ IR E+GAQ+R++ PL + DE IQI+G +VKKALL ++S L ++ ++
Sbjct: 168 IVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQ 227
Query: 176 MDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP--GPYGPDHHPRGYSPFPGPESAG 233
+SG + P+G + H P G AP G YG D + P +
Sbjct: 228 NLLSSSGGY-PAGSLMSHAGGPRLVG-------LAPLMGSYGRDAGDWSRPLYQPPRNDP 279
Query: 234 PSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI 293
P+ F+ +L+ + + S+IGKGG+ + L+ ET A+I++ + + ++ +I I
Sbjct: 280 PATEFFI------RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITI 333
Query: 294 STRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV--TARLLVRSPQVGFLLGKGGHVIS 351
S RE + +SP EA+ R+ + ++ S V T RLLV S ++G +LGKGG +I+
Sbjct: 334 SAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIIT 393
Query: 352 EMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIF 404
EMRR T A+IRI KE + K ++E+VQ++G L ++AL ITS++R +F
Sbjct: 394 EMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 27/213 (12%)
Query: 216 PDH---HPRGYSPFPGPESAGPSHRMFV----------EEEVVFKLLCQQDKVGSLIGKG 262
PDH H + P + G S R + ++ VF+ LC K+GS+IG+G
Sbjct: 9 PDHRDSHRKRSRPQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRG 68
Query: 263 GSGVRALQNETGASIQIVEAGPDSDERVIVI---STRENS----DQKHSPAQEALFRVHC 315
G V+ L+N+T + I+I EA P DERVI I S N+ ++ SPAQ+ALFR+H
Sbjct: 69 GDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHD 128
Query: 316 RL------TEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI 369
R+ +E E VTA+LLV S Q+G +LG+GG ++ +R TGA IRI +
Sbjct: 129 RVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNM 188
Query: 370 KYIPQN-EEVVQVTGTLQSVRDALFHITSKIRE 401
N +E++Q++G + V+ AL I S++ E
Sbjct: 189 PLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 225/414 (54%), Gaps = 42/414 (10%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVNIHVDD----------FGGGDDRLVTIVGAAEHPA 67
+TVFR LCP K ++G GD V +D G D+R++TI ++
Sbjct: 49 DTVFRYLCPVK-KIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETN 107
Query: 68 SCGGDE---SPARLALIRVFERMVEEESTTSNS-----AVACTLVAPSYQVGSILGRGGK 119
+ G E SPA+ AL R+ +R+V +++ + +S V L+ PS Q+G ILGRGG+
Sbjct: 108 AFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQ 167
Query: 120 FAEKIRQESGAQVRVLPKDQPPLPS-PGDEFIQITGNFNVVKKALLSVSSCLLDH---AR 175
+ IR E+GAQ+R++ PL + DE IQI+G +VKKALL ++S L ++ ++
Sbjct: 168 IVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQ 227
Query: 176 MDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAP--GPYGPDHHPRGYSPFPGPESAG 233
+SG + P+G + H P G AP G YG D + P +
Sbjct: 228 NLLSSSGGY-PAGSLMSHAGGPRLVG-------LAPLMGSYGRDAGDWSRPLYQPPRNDP 279
Query: 234 PSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI 293
P+ F+ +L+ + + S+IGKGG+ + L+ ET A+I++ + + ++ +I I
Sbjct: 280 PATEFFI------RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITI 333
Query: 294 STRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAV--TARLLVRSPQVGFLLGKGGHVIS 351
S RE + +SP EA+ R+ + ++ S V T RLLV S ++G +LGKGG +I+
Sbjct: 334 SAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIIT 393
Query: 352 EMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIF 404
EMRR T A+IRI KE + K ++E+VQ++G L ++AL ITS++R +F
Sbjct: 394 EMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 27/213 (12%)
Query: 216 PDH---HPRGYSPFPGPESAGPSHRMFV----------EEEVVFKLLCQQDKVGSLIGKG 262
PDH H + P + G S R + ++ VF+ LC K+GS+IG+G
Sbjct: 9 PDHRDSHRKRSRPQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRG 68
Query: 263 GSGVRALQNETGASIQIVEAGPDSDERVIVI---STRENS----DQKHSPAQEALFRVHC 315
G V+ L+N+T + I+I EA P DERVI I S N+ ++ SPAQ+ALFR+H
Sbjct: 69 GDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHD 128
Query: 316 RL------TEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI 369
R+ +E E VTA+LLV S Q+G +LG+GG ++ +R TGA IRI +
Sbjct: 129 RVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNM 188
Query: 370 KYIPQN-EEVVQVTGTLQSVRDALFHITSKIRE 401
N +E++Q++G + V+ AL I S++ E
Sbjct: 189 PLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 206/460 (44%), Gaps = 84/460 (18%)
Query: 7 NKRR---HVPPAPPETVFRILCPAAAKTADLLGLAG---------DGVNIHVDD-FGGGD 53
+KRR HV P ET R++C A+ ++G G G IH + G D
Sbjct: 12 SKRRPVIHV--LPDETAIRVVCHASV-IGGIIGSNGYVVSKLRRETGTKIHCESPVNGSD 68
Query: 54 DRLVTIVGAA------------------EHPASCGGDESPARLALIRVFERMVEEESTTS 95
+V IVG+ EH + S A+ ALIRV ER +
Sbjct: 69 HWVVFIVGSTAVNQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKD 128
Query: 96 NSAVA--------CTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLP-SPG 146
V C ++A Q+G++LG GGK E +R+ SGA +RVLP PP+ +
Sbjct: 129 GGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLP---PPICGTKN 185
Query: 147 DEFIQITGNFNVVKKALLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPY-- 204
DE IQITG+ VKKAL+ VSS + ++A ++ G PP + Y
Sbjct: 186 DELIQITGDVLAVKKALVMVSSYIQNNAPLN----------------GYPPPLSIKGYES 229
Query: 205 -PQRGYAPGPYGPDHHPRGYSPFPGPESAGPSHRMF-------VEEEVVFKLLCQQDKVG 256
G + P+ S S+R E +VVFK++ G
Sbjct: 230 LSTDGNSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDGGNSTERKVVFKIIFTSVVAG 289
Query: 257 SLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCR 316
+IGK G+ +RALQNETGASI + S ERV+ +S REN + ++S AQ AL V R
Sbjct: 290 GIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFAR 349
Query: 317 LTEI--------GFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQ 368
EI G V +LLV S G G E ATGA + I Q
Sbjct: 350 SVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNR---EAIIATGADVHISVGNQ 406
Query: 369 I-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLK 407
+ ++I +NE V+++ G V+ AL H++SK+RE + P K
Sbjct: 407 VLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKK 446
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 62/215 (28%)
Query: 242 EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI--STREN- 298
+E +++C +G +IG G V L+ ETG I SD V+ I ST N
Sbjct: 23 DETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQ 82
Query: 299 -----------SDQKH--------SPAQEALFRVHCRLTEIGFEQSNAVTAR-------- 331
S +H S AQ AL RV E+S V A
Sbjct: 83 SILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRV--------LERSWVVLAAKDGGGVVD 134
Query: 332 ---------LLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQIKYIP------QNE 376
+L Q+G +LG GG + MRR +GA IR+ +P +N+
Sbjct: 135 GEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRV--------LPPPICGTKND 186
Query: 377 EVVQVTGTLQSVRDALFHITSKIREIIFPLKTPPP 411
E++Q+TG + +V+ AL ++S I+ PL PP
Sbjct: 187 ELIQITGDVLAVKKALVMVSSYIQN-NAPLNGYPP 220
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 208/454 (45%), Gaps = 76/454 (16%)
Query: 13 PPAPPETVFRILCPAAAKTADLLGLAGD---------GVNIHVDDFGGGD-DRLVTIV-G 61
P T +RILC AK ++G +G G I+V + GD +R++ I
Sbjct: 62 PETMATTTYRILC-HDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDN 120
Query: 62 AAEHPASCGGDESPARLALIRVFERMVEEES------------------TTSNSAVACTL 103
P SPA+ AL V +R++E E+ V L
Sbjct: 121 RRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRL 180
Query: 104 VAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQ--PPLPSPGDEFIQITGNFNVVKK 161
V VG +LG+GGK E++R E+ +R+LP++ P S +E +QI G N VK
Sbjct: 181 VVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKN 240
Query: 162 ALLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPY-PQRGYAPG--PYGP-- 216
AL VSS L + D N QG + P+R +A Y P
Sbjct: 241 ALAIVSSRLRESQHRDRSN------------------FQGRSHSPERSFAAAGDDYMPQL 282
Query: 217 -----DHHPRG----------YSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGK 261
D PRG S + A P EE+VF++LC DK+ ++G+
Sbjct: 283 RRQSSDRFPRGNFRNNNFSSRQSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGE 342
Query: 262 GGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIG 321
+ LQNE G +++ + SDE++I IS+ E D PAQEAL + ++ ++
Sbjct: 343 SQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLI 402
Query: 322 FEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQ 380
++ N +T RLLV S L GK G V SE+ R TG S++I ++E+I + N+ V+Q
Sbjct: 403 PDKDNLITTRLLVPSRDSICLEGKAGSV-SEISRLTGTSVQILAREEIPRCASINDVVIQ 461
Query: 381 VTGTLQSVRDALFHITSKIREIIFP----LKTPP 410
+TG +++ R+AL +T +R +F +TPP
Sbjct: 462 ITGEIRAAREALVELTLLLRSHMFKELSQKETPP 495
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 123/200 (61%), Gaps = 12/200 (6%)
Query: 217 DHHPRGYSPFPGPESAG-----PSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQN 271
D HP ++ + PS ++VVFK+LC + G +IG GG VR L +
Sbjct: 420 DTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHS 479
Query: 272 ETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQ------S 325
ETGA I + D +ER+I ++ EN + + SPAQ+A+ + RL E+ +
Sbjct: 480 ETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPR 539
Query: 326 NAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGT 384
+++TARL+V + Q+G +LGKGG ++SEMR+ TGA+I+I EQ K I +N++VVQ+TG
Sbjct: 540 SSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGE 599
Query: 385 LQSVRDALFHITSKIREIIF 404
+VR+A+FHITS++R+ +F
Sbjct: 600 FPNVREAIFHITSRLRDSVF 619
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 36/188 (19%)
Query: 21 FRILCPAAAKTADLLGLAGD---------GVNIHVDDF-GGGDDRLVTIVGAAEHP---- 66
FR+LCP + A ++G +G+ G I V++ G DR++TI+ A+
Sbjct: 49 FRLLCPLSHVGA-VIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 67 --ASCGGD-----------ESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSI 113
A+ G+ S A+ ALI+VFE + E + + V C L+ S G++
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT---VVCRLLTESSHAGAV 164
Query: 114 LGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL--- 170
+G+GG+ IR+E+G ++ + ++ P DE +++ GN VKKAL+S+S CL
Sbjct: 165 IGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQNC 224
Query: 171 --LDHARM 176
+D RM
Sbjct: 225 QSIDKVRM 232
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 246 FKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK--- 302
F+LLC VG++IGK G+ ++ LQ TGA I++ E S +RVI I + +S +
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 303 ------------------HSPAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLG 344
S AQ AL +V L S+ V RLL S G ++G
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIG 166
Query: 345 KGGHVISEMRRATGASIRIFSKEQIKYIP----QNEEVVQVTGTLQSVRDALFHIT 396
KGG ++ +R+ TG I I +I+ +P ++E+V+V G +V+ AL I+
Sbjct: 167 KGGQMVGSIRKETGCKISI----RIENLPICADTDDEMVEVEGNAIAVKKALVSIS 218
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 21/171 (12%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVNIHVDDFGG----------GDDRLVTIVGAAEHPA 67
+ VF+ILC + ++G G V + + G ++RL+ + A+E+P
Sbjct: 451 DVVFKILC-STENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVT-ASENP- 507
Query: 68 SCGGDESPARLALIRVFERMVEEESTTS-----NSAVACTLVAPSYQVGSILGRGGKFAE 122
C SPA+ A++ +F R+ E + S++ LV P+ Q+G +LG+GG
Sbjct: 508 EC--QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 565
Query: 123 KIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLD 172
++R+ +GA +++L +Q P S D+ +QITG F V++A+ ++S L D
Sbjct: 566 EMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRD 616
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 123/200 (61%), Gaps = 12/200 (6%)
Query: 217 DHHPRGYSPFPGPESAG-----PSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQN 271
D HP ++ + PS ++VVFK+LC + G +IG GG VR L +
Sbjct: 420 DTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHS 479
Query: 272 ETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQ------S 325
ETGA I + D +ER+I ++ EN + + SPAQ+A+ + RL E+ +
Sbjct: 480 ETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPR 539
Query: 326 NAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGT 384
+++TARL+V + Q+G +LGKGG ++SEMR+ TGA+I+I EQ K I +N++VVQ+TG
Sbjct: 540 SSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGE 599
Query: 385 LQSVRDALFHITSKIREIIF 404
+VR+A+FHITS++R+ +F
Sbjct: 600 FPNVREAIFHITSRLRDSVF 619
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 36/188 (19%)
Query: 21 FRILCPAAAKTADLLGLAGD---------GVNIHVDDF-GGGDDRLVTIVGAAEHP---- 66
FR+LCP + A ++G +G+ G I V++ G DR++TI+ A+
Sbjct: 49 FRLLCPLSHVGA-VIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 67 --ASCGGD-----------ESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSI 113
A+ G+ S A+ ALI+VFE + E + + V C L+ S G++
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT---VVCRLLTESSHAGAV 164
Query: 114 LGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL--- 170
+G+GG+ IR+E+G ++ + ++ P DE +++ GN VKKAL+S+S CL
Sbjct: 165 IGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQNC 224
Query: 171 --LDHARM 176
+D RM
Sbjct: 225 QSIDKVRM 232
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 246 FKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK--- 302
F+LLC VG++IGK G+ ++ LQ TGA I++ E S +RVI I + +S +
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 303 ------------------HSPAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLG 344
S AQ AL +V L S+ V RLL S G ++G
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIG 166
Query: 345 KGGHVISEMRRATGASIRIFSKEQIKYIP----QNEEVVQVTGTLQSVRDALFHIT 396
KGG ++ +R+ TG I I +I+ +P ++E+V+V G +V+ AL I+
Sbjct: 167 KGGQMVGSIRKETGCKISI----RIENLPICADTDDEMVEVEGNAIAVKKALVSIS 218
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 21/171 (12%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVNIHVDDFGG----------GDDRLVTIVGAAEHPA 67
+ VF+ILC + ++G G V + + G ++RL+ + A+E+P
Sbjct: 451 DVVFKILC-STENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVT-ASENP- 507
Query: 68 SCGGDESPARLALIRVFERMVEEESTTS-----NSAVACTLVAPSYQVGSILGRGGKFAE 122
C SPA+ A++ +F R+ E + S++ LV P+ Q+G +LG+GG
Sbjct: 508 EC--QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 565
Query: 123 KIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLD 172
++R+ +GA +++L +Q P S D+ +QITG F V++A+ ++S L D
Sbjct: 566 EMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRD 616
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 123/200 (61%), Gaps = 12/200 (6%)
Query: 217 DHHPRGYSPFPGPESAG-----PSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQN 271
D HP ++ + PS ++VVFK+LC + G +IG GG VR L +
Sbjct: 420 DTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHS 479
Query: 272 ETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQ------S 325
ETGA I + D +ER+I ++ EN + + SPAQ+A+ + RL E+ +
Sbjct: 480 ETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFSRLFELATNKILDNGPR 539
Query: 326 NAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGT 384
+++TARL+V + Q+G +LGKGG ++SEMR+ TGA+I+I EQ K I +N++VVQ+TG
Sbjct: 540 SSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGE 599
Query: 385 LQSVRDALFHITSKIREIIF 404
+VR+A+FHITS++R+ +F
Sbjct: 600 FPNVREAIFHITSRLRDSVF 619
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 36/188 (19%)
Query: 21 FRILCPAAAKTADLLGLAGD---------GVNIHVDDF-GGGDDRLVTIVGAAEHP---- 66
FR+LCP + A ++G +G+ G I V++ G DR++TI+ A+
Sbjct: 49 FRLLCPLSHVGA-VIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 67 --ASCGGD-----------ESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSI 113
A+ G+ S A+ ALI+VFE + E + + V C L+ S G++
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT---VVCRLLTESSHAGAV 164
Query: 114 LGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL--- 170
+G+GG+ IR+E+G ++ + ++ P DE +++ GN VKKAL+S+S CL
Sbjct: 165 IGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQNC 224
Query: 171 --LDHARM 176
+D RM
Sbjct: 225 QSIDKVRM 232
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 246 FKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK--- 302
F+LLC VG++IGK G+ ++ LQ TGA I++ E S +RVI I + +S +
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 303 ------------------HSPAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLG 344
S AQ AL +V L S+ V RLL S G ++G
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIG 166
Query: 345 KGGHVISEMRRATGASIRIFSKEQIKYIP----QNEEVVQVTGTLQSVRDALFHIT 396
KGG ++ +R+ TG I I +I+ +P ++E+V+V G +V+ AL I+
Sbjct: 167 KGGQMVGSIRKETGCKISI----RIENLPICADTDDEMVEVEGNAIAVKKALVSIS 218
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 21/171 (12%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVNIHVDDFGG----------GDDRLVTIVGAAEHPA 67
+ VF+ILC + ++G G V + + G ++RL+ + A+E+P
Sbjct: 451 DVVFKILC-STENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVT-ASENP- 507
Query: 68 SCGGDESPARLALIRVFERMVEEESTTS-----NSAVACTLVAPSYQVGSILGRGGKFAE 122
C SPA+ A++ +F R+ E + S++ LV P+ Q+G +LG+GG
Sbjct: 508 EC--QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 565
Query: 123 KIRQESGAQVRVLPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCLLD 172
++R+ +GA +++L +Q P S D+ +QITG F V++A+ ++S L D
Sbjct: 566 EMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRD 616
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 117/445 (26%), Positives = 202/445 (45%), Gaps = 73/445 (16%)
Query: 20 VFRILCPAAAKTADLLGLAGDGVNIH----------VDDFGGGDDRLVTIVGAAEHPASC 69
V+RILCP+ ++G +G +N+ VD F G +R++TI +
Sbjct: 45 VYRILCPSGV-MGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 70 GGDE----------SPARLALIRVFERMVEEESTTS-NSAV------ACTLVAPSYQVGS 112
E A+ AL++V + +V +T + N+ + C L+ PS Q
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 113 ILGRGGKFAEKIRQESGAQVRVLPKD----QPPLPSPGDEFIQITGNFNVVKKALLSVSS 168
++G+ G + IR + A V+V+ KD D + I+G VKKAL +VS+
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 169 CLLD---HARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHH------ 219
+ ++ + + VP+ I P+ YPQ G P H
Sbjct: 224 IMYKVSPREQIPLDTTVQEVPASIII------PSDLSIYPQAGLYPSQDSIFQHGANVSS 277
Query: 220 -----PRGY-------------SPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGK 261
P+GY S P G S R E++ K++C K+G +IGK
Sbjct: 278 FIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSR---SEKLAIKVICSSSKIGRVIGK 334
Query: 262 GGSGVRALQNETGASIQIVEAGPDSDER-VIVISTRENSDQKHSPAQEALFRVHCRLTEI 320
GG ++ ++ +G+ I++ ++ + D+ VI ++ E+ D S A EA+ + ++ +
Sbjct: 335 GGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKIND- 393
Query: 321 GFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVV 379
E + V +LLV S +G ++GK G +ISE+R+ T A I I K N+E+V
Sbjct: 394 --EDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELV 451
Query: 380 QVTGTLQSVRDALFHITSKIREIIF 404
+++G + +VRDAL I ++R+ +
Sbjct: 452 EISGEVSNVRDALIQIVLRLRDDVL 476
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 26/185 (14%)
Query: 244 VVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVI-----STREN 298
VV+++LC +GS+IGK G + ++ ET A I++V+ P ERVI I ++
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 299 SDQKHS---------PAQEALFRVHCRLT--------EIGFEQSNAVTARLLVRSPQVGF 341
D ++S AQ AL +VH + ++ + RLLV S Q
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 342 LLGKGGHVISEMRRATGASIRIFSKE----QIKYIPQNEEVVQVTGTLQSVRDALFHITS 397
++GK G +I +R T A++++ SK+ + +V ++G +SV+ ALF +++
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 398 KIREI 402
+ ++
Sbjct: 224 IMYKV 228
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 134/332 (40%), Gaps = 52/332 (15%)
Query: 21 FRILCPAAAKTADLLGLAG---------DGVNIHVDDFGGG-DDRLVTIVGAAEHPASCG 70
+++C +++K ++G G G +I V+D DD V V A E P
Sbjct: 319 IKVIC-SSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDL- 376
Query: 71 GDESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGA 130
+S A A++ + E++ +E+ V L+ S +G I+G+ G +IR+ + A
Sbjct: 377 --KSMAVEAVLLLQEKINDED----EDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKA 430
Query: 131 QVRVLP-KDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDAENSG------- 182
+ + + P P DE ++I+G + V+ AL+ + L D D E
Sbjct: 431 DIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQPPAR 490
Query: 183 --------------------AFVPSGPGIG--HGMAPPAQGEPYPQRGYAPGPYGPDHHP 220
+F+ S P + P G + G YG P
Sbjct: 491 SENNNFFSSSSSNTGLALPQSFMSSVPQVASVDFNRRPETGSSMSMLPSSGGIYGYGSFP 550
Query: 221 RGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIV 280
G + + S + + + ++ + VG ++G+GG + ++ +GA I+I
Sbjct: 551 VGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEIS 610
Query: 281 EAGPDSDERVIVISTRENSDQKHSPAQEALFR 312
++ RV +IS S+QK + E LF+
Sbjct: 611 DSKNSHGGRVALISG--TSEQKRTA--ENLFQ 638
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 134/472 (28%), Positives = 212/472 (44%), Gaps = 94/472 (19%)
Query: 3 SNNNNKRR--HVPPAPPE-TVFRILCPAAAKTADLLGLAGDGVN---------IHV-DDF 49
SN N KRR H E V+RILCP ++G +G +N I V D
Sbjct: 17 SNRNQKRRISHDKINRDELVVYRILCPIDV-VGGVIGKSGKVINAIRHNTKAKIKVFDQL 75
Query: 50 GGGDDRLVTIVGAAEH-------------PASCGGDESPARLALIRVFERMV---EEEST 93
G R++TI + + P C D AL++V++ +V EE +T
Sbjct: 76 HGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQD------ALLKVYDAIVASDEENNT 129
Query: 94 TSN----SAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPP----LPSP 145
+N C L+ P Q S++G+ G+ ++IR+ + A V+V+ KD
Sbjct: 130 KTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAME 189
Query: 146 GDEFIQITGNFNVVKKALLSVSSCL----------LDHARMDAENSGAFVPSGPGIGHGM 195
D + I+G VK+AL +VS+ + LD D + VPS + + +
Sbjct: 190 YDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPAASVIVPSD--LSNSV 247
Query: 196 APPA-----------QGEPYPQ----------RGYAPGPYGPDHHPRGYSPFPGPESAGP 234
P QG P +GYA P P S P G
Sbjct: 248 YPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAANP--VPVFASSLPVTHGFGG 305
Query: 235 SHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPD--SDERVIV 292
S R EE+VFK+LC + +IGKGGS ++ ++ +G+ I++ ++ DE VI+
Sbjct: 306 SSR---SEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVII 362
Query: 293 ISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISE 352
++ E+ D S A EA+ + I E + V +LLV S +G ++GK G VI+E
Sbjct: 363 VTATESPDDMKSMAVEAVLLLQ---EYINDEDAENVKMQLLVSSKVIGCVIGKSGSVINE 419
Query: 353 MRRATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIF 404
+R+ T A+I I ++ +++V+V+G + SVRDAL I ++RE +
Sbjct: 420 IRKRTNANICISKGKK-------DDLVEVSGEVSSVRDALIQIVLRLREDVL 464
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/472 (28%), Positives = 212/472 (44%), Gaps = 94/472 (19%)
Query: 3 SNNNNKRR--HVPPAPPE-TVFRILCPAAAKTADLLGLAGDGVN---------IHV-DDF 49
SN N KRR H E V+RILCP ++G +G +N I V D
Sbjct: 17 SNRNQKRRISHDKINRDELVVYRILCPIDV-VGGVIGKSGKVINAIRHNTKAKIKVFDQL 75
Query: 50 GGGDDRLVTIVGAAEH-------------PASCGGDESPARLALIRVFERMV---EEEST 93
G R++TI + + P C D AL++V++ +V EE +T
Sbjct: 76 HGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQD------ALLKVYDAIVASDEENNT 129
Query: 94 TSN----SAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPP----LPSP 145
+N C L+ P Q S++G+ G+ ++IR+ + A V+V+ KD
Sbjct: 130 KTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAME 189
Query: 146 GDEFIQITGNFNVVKKALLSVSSCL----------LDHARMDAENSGAFVPSGPGIGHGM 195
D + I+G VK+AL +VS+ + LD D + VPS + + +
Sbjct: 190 YDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPAASVIVPSD--LSNSV 247
Query: 196 APPA-----------QGEPYPQ----------RGYAPGPYGPDHHPRGYSPFPGPESAGP 234
P QG P +GYA P P S P G
Sbjct: 248 YPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAANP--VPVFASSLPVTHGFGG 305
Query: 235 SHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPD--SDERVIV 292
S R EE+VFK+LC + +IGKGGS ++ ++ +G+ I++ ++ DE VI+
Sbjct: 306 SSR---SEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVII 362
Query: 293 ISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISE 352
++ E+ D S A EA+ + I E + V +LLV S +G ++GK G VI+E
Sbjct: 363 VTATESPDDMKSMAVEAVLLLQ---EYINDEDAENVKMQLLVSSKVIGCVIGKSGSVINE 419
Query: 353 MRRATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIF 404
+R+ T A+I I ++ +++V+V+G + SVRDAL I ++RE +
Sbjct: 420 IRKRTNANICISKGKK-------DDLVEVSGEVSSVRDALIQIVLRLREDVL 464
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 112/288 (38%), Gaps = 53/288 (18%)
Query: 18 ETVFRILCPAAAKTADLLGLAGDGVN---------IHVDD--FGGGDDRLVTIVGAAEHP 66
E VF++LCP ++G G + I V+D GDD V IV A E P
Sbjct: 311 ELVFKVLCPLC-NIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESP 369
Query: 67 ASCGGDESPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQ 126
D + + + + + +E + V L+ S +G ++G+ G +IR+
Sbjct: 370 ----DDMKSMAVEAVLLLQEYINDEDAEN---VKMQLLVSSKVIGCVIGKSGSVINEIRK 422
Query: 127 ESGAQVRVLPKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCLLDHARMDAE------- 179
+ A + + + D+ ++++G + V+ AL+ + L + D +
Sbjct: 423 RTNANICISKGKK-------DDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVATRKP 475
Query: 180 ----NSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHHPRGYSPFPGPE----S 231
++ +F+ G+ + P G+ GY FP + S
Sbjct: 476 PARTDNCSFLSGSSNAGYTL-PSFMSSMASTSGF-----------HGYGSFPAGDNVLGS 523
Query: 232 AGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQI 279
GP + ++L + ++GKGG + ++ +GA I+I
Sbjct: 524 TGPYSYGRLPSSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEI 571
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 206/439 (46%), Gaps = 63/439 (14%)
Query: 4 NNNNKRRHVPP-------APPETVFRILCPAAAKTADLLGLAGD---------GVNIHVD 47
N +KRR++ A +TV+R LCP KT ++G G+ N+ ++
Sbjct: 22 NGGSKRRNLHDETDQNVIASEDTVYRYLCPVK-KTGSIIGKGGEIAKQIRSETKSNMRIN 80
Query: 48 D-FGGGDDRLVTIVGAAEHPASCGGD---ESPARLALIRVFERMVEEESTT--------- 94
+ G ++R+VT+ E G D PA AL +V + +V +
Sbjct: 81 EALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDL 140
Query: 95 -SNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPP---LPSPGDEFI 150
V ++ PS Q+G ++G+GG+ + +R ++ AQ+RV+ KD P L DE +
Sbjct: 141 GEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELL 199
Query: 151 QITGNFNVVKKALLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYA 210
I G VV++AL V+S L D+ P + + Q G
Sbjct: 200 LIIGEPLVVREALYQVASLLHDN---------------PSRFQHLLLSSSSSSMHQPGAM 244
Query: 211 PGPYGPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQ 270
R Y+ A E +C + VG +IGKGG + ++
Sbjct: 245 LMSAALTSSHRNYAVRRDIADA---------REFCVCFICPAENVGGVIGKGGGFINQIR 295
Query: 271 NETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSN--AV 328
ETGA+I++ + D D+ +I IS++E + + SPA A R+ R +E + +N A+
Sbjct: 296 QETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAI 354
Query: 329 TARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQS 387
+ RLLV S Q+G L+GKGG VISEMR T A+IRI KE + K ++EE+VQ+TG+ +
Sbjct: 355 STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDA 414
Query: 388 VRDALFHITSKIREIIFPL 406
AL + ++R F +
Sbjct: 415 AMKALTQVILRLRANSFDM 433
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 203/435 (46%), Gaps = 56/435 (12%)
Query: 1 MSSNNNNKRRHVPPAPPETVFRILCPAAAKTADLLGLAGD---------GVNIHVDD-FG 50
M+S N A +TV+R LCP KT ++G G+ N+ +++
Sbjct: 1 MASTLRNIHDQNVIASEDTVYRYLCPVK-KTGSIIGKGGEIAKQIRSETKSNMRINEALP 59
Query: 51 GGDDRLVTIVGAAEHPASCGGD---ESPARLALIRVFERMVEEESTT----------SNS 97
G ++R+VT+ E G D PA AL +V + +V +
Sbjct: 60 GCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQ 119
Query: 98 AVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPP---LPSPGDEFIQITG 154
V ++ PS Q+G ++G+GG+ + +R ++ AQ+RV+ KD P L DE + I G
Sbjct: 120 TVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIG 178
Query: 155 NFNVVKKALLSVSSCLLDHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPY 214
VV++AL V+S L D+ P + + Q G
Sbjct: 179 EPLVVREALYQVASLLHDN---------------PSRFQHLLLSSSSSSMHQPGAMLMSA 223
Query: 215 GPDHHPRGYSPFPGPESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETG 274
R Y+ A E +C + VG +IGKGG + ++ ETG
Sbjct: 224 ALTSSHRNYAVRRDIADA---------REFCVCFICPAENVGGVIGKGGGFINQIRQETG 274
Query: 275 ASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSN--AVTARL 332
A+I++ + D D+ +I IS++E + + SPA A R+ R +E + +N A++ RL
Sbjct: 275 ATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRL 333
Query: 333 LVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDA 391
LV S Q+G L+GKGG VISEMR T A+IRI KE + K ++EE+VQ+TG+ + A
Sbjct: 334 LVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKA 393
Query: 392 LFHITSKIREIIFPL 406
L + ++R F +
Sbjct: 394 LTQVILRLRANSFDM 408
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 198/418 (47%), Gaps = 56/418 (13%)
Query: 18 ETVFRILCPAAAKTADLLGLAGD---------GVNIHVDD-FGGGDDRLVTIVGAAEHPA 67
+TV+R LCP KT ++G G+ N+ +++ G ++R+VT+ E
Sbjct: 10 DTVYRYLCPVK-KTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68
Query: 68 SCGGD---ESPARLALIRVFERMVEEESTT----------SNSAVACTLVAPSYQVGSIL 114
G D PA AL +V + +V + V ++ PS Q+G ++
Sbjct: 69 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 128
Query: 115 GRGGKFAEKIRQESGAQVRVLPKDQPP---LPSPGDEFIQITGNFNVVKKALLSVSSCLL 171
G+GG+ + +R ++ AQ+RV+ KD P L DE + I G VV++AL V+S L
Sbjct: 129 GKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLH 187
Query: 172 DHARMDAENSGAFVPSGPGIGHGMAPPAQGEPYPQRGYAPGPYGPDHHPRGYSPFPGPES 231
D+ P + + Q G R Y+
Sbjct: 188 DN---------------PSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDIAD 232
Query: 232 AGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVI 291
A E +C + VG +IGKGG + ++ ETGA+I++ + D D+ +I
Sbjct: 233 A---------REFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCII 283
Query: 292 VISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSN--AVTARLLVRSPQVGFLLGKGGHV 349
IS++E + + SPA A R+ R +E + +N A++ RLLV S Q+G L+GKGG V
Sbjct: 284 FISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAV 342
Query: 350 ISEMRRATGASIRIFSKEQI-KYIPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPL 406
ISEMR T A+IRI KE + K ++EE+VQ+TG+ + AL + ++R F +
Sbjct: 343 ISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDM 400
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 174/381 (45%), Gaps = 79/381 (20%)
Query: 74 SPARLALIRVFERMVEEESTTSNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVR 133
S A+ ALIRVFE + + T+S V+C L+ V +++G+ G+ ++I +E+G V+
Sbjct: 114 SRAQYALIRVFEALNFGDCTSS--TVSCNLLMEGSHVVTVIGKNGELMQRILEETGCNVQ 171
Query: 134 VLPKDQPPLPSPGDEFIQITGN-FNVVKKALLSVSSCLLDHARMDAENSGAFVPSGPGIG 192
+ D +PGD ++I GN + V KAL+S+SS L A P
Sbjct: 172 LRSHDLSICTNPGDVVLKIEGNRLSAVMKALVSISSRL-----------QACPPISTASL 220
Query: 193 HGMA-PPAQGEP--YPQRGYAP-GPYGPDH--------------------HPR-GYSPFP 227
H A P A P Y + Y P+G H PR Y P P
Sbjct: 221 HAEAVPDALRRPMEYRSQQYREVDPHGSLHRHVEISQEDALVRPFFRTITQPRIDYLPHP 280
Query: 228 GPESAGPSHRMFVE--------------------EEVVFKLLCQQDKVGSLIGKGGSGVR 267
+ HR+ +V K+LC + +I
Sbjct: 281 SYD-----HRLITSASKNPPVTIKQPLQASKDDIRQVDLKILCSNESASVVIKT------ 329
Query: 268 ALQNETGASIQIVEAGPDSDERVIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQ--- 324
++ T ASI + + PD DER++ I+ E + S +Q AL V + E +
Sbjct: 330 --RSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVFSNMYENATAKVLD 387
Query: 325 ---SNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKEQI-KYIPQNEEVVQ 380
++++TARL+VRS Q+ LLG+ G + + +++ TGA I + + EQ K + +N +VVQ
Sbjct: 388 SGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQVVQ 447
Query: 381 VTGTLQSVRDALFHITSKIRE 401
++G +VR+A+ +TS +RE
Sbjct: 448 ISGEFPNVREAINQVTSMLRE 468
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 21 FRILCPAAAKTADLLGLAGDGVNIHV-DDFGGGDDRLVTIVGAAEHPASCGGDESPARLA 79
+ILC + + + + +I V D D+RLVTI + S ++ A
Sbjct: 314 LKILCSNESASVVIKTRSVTDASISVGDRHPDCDERLVTITAFEK----TKDITSESQRA 369
Query: 80 LIRVFERMVEEESTTS-----NSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRV 134
L+ VF M E + S++ LV S Q+ +LG G+ I+Q +GA + V
Sbjct: 370 LVLVFSNMYENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITV 429
Query: 135 LPKDQ-PPLPSPGDEFIQITGNFNVVKKALLSVSSCL 170
L +Q P S ++ +QI+G F V++A+ V+S L
Sbjct: 430 LNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSML 466
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 242 EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGP--DSDERVIVI------ 293
E V F++LC + G +IGK G V+ L T +SI VE P DS R+I I
Sbjct: 28 EYVTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIW-VEKTPLDDSPYRIIKIFGHVGS 86
Query: 294 -------------STR----ENSDQKHSPAQEALFRVHCRLTEIGFEQSNAVTARLLVRS 336
S R + + + S AQ AL RV L G S+ V+ LL+
Sbjct: 87 VSRVKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEALN-FGDCTSSTVSCNLLMEG 145
Query: 337 PQVGFLLGKGGHVISEMRRATGASIRIFSKEQIKYIPQNEEVVQVTGT-LQSVRDALFHI 395
V ++GK G ++ + TG ++++ S + + V+++ G L +V AL I
Sbjct: 146 SHVVTVIGKNGELMQRILEETGCNVQLRSHDLSICTNPGDVVLKIEGNRLSAVMKALVSI 205
Query: 396 TSKIR 400
+S+++
Sbjct: 206 SSRLQ 210
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 243 EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK 302
E VF++L KVGS+IG+ G ++ + ET A I+I++ P + ER +++S +E +
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 303 HSPAQEALFRVHCRLTE-IGFEQSNA-----VTARLLVRSPQVGFLLGKGGHVISEMRRA 356
P+ + L RVH R+ + + E S A V+ RLLV + Q G L+GK G + ++ A
Sbjct: 246 LPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEA 305
Query: 357 TGASIRIFSKEQIK-YIPQNEEVVQVTGTLQSVRDALFHITSKIREII 403
+ +R+ E + + Q++ VV+V G SV AL I S +R+ +
Sbjct: 306 SACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFL 353
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 21/179 (11%)
Query: 8 KRRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVNIHVDDFG----------GGDDRLV 57
+ + P P ETVFR+L PA K ++G GD + V++ G +R V
Sbjct: 176 EEKRWPGWPGETVFRMLVPAQ-KVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAV 234
Query: 58 TIVGAAEHPASCGGDESPARLALIRVFERMV-----EEESTTSNSAVACTLVAPSYQVGS 112
+ G E +S P+ L+RV R+V E S V+ L+ P+ Q GS
Sbjct: 235 MVSGKEEPESSL----PPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGS 290
Query: 113 ILGRGGKFAEKIRQESGAQVRVL-PKDQPPLPSPGDEFIQITGNFNVVKKALLSVSSCL 170
++G+ G + I++ S VRVL +D P D +++ G V +AL ++S L
Sbjct: 291 LIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHL 349
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 243 EVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK 302
+ VF+++ KVG++IG+ G ++ + ET A I++++ ++ +R+++IS +E +
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 303 HSPAQEALFRVHCRLTEIGFEQSNAV--------TARLLVRSPQVGFLLGKGGHVISEMR 354
SPA +A+ RV R++ + + V + RLLV S Q L+GK G +I +
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIV 192
Query: 355 RATGASIRIFSKEQIK-YIPQNEEVVQVTGTLQSVRDALFHITSKIREII 403
+GAS+RI S+E+ Y Q+E +V + G + AL I +R +
Sbjct: 193 ENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFL 242
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 27/192 (14%)
Query: 4 NNNNKRRHVPPAPPETVFRILCPAAAKTADLLGLAGDGVNIHVDDFGG----------GD 53
N++ P P + VFR++ P K ++G GD + ++
Sbjct: 59 TNDSAEERWPGWPGDCVFRMIVPVT-KVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTP 117
Query: 54 DRLVTIVGAAEHPASCGGDESPARLALIRVFERMV-----EEESTTSNSAV--ACTLVAP 106
DR+V I G E A SPA A++RVF R+ +++ + +V + L+
Sbjct: 118 DRIVLISGKEEPEAYM----SPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVA 173
Query: 107 SYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQPPLPSPGDE-FIQITGNFNVVKKALLS 165
S Q +++G+ G + I + SGA VR+L +++ P + DE + + G + KAL +
Sbjct: 174 STQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEA 233
Query: 166 V----SSCLLDH 173
+ L+DH
Sbjct: 234 IVGHLRRFLVDH 245
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 34/162 (20%)
Query: 277 IQIVEAGPDSDERVIVISTRENSDQKH----------SPAQEALFRVH------------ 314
+++ EA P DERV+ I + NS++++ PA +ALF+VH
Sbjct: 1 MRVNEALPGCDERVVTIYS--NSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDD 58
Query: 315 -CRLTEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASIRIFSKE--QIKY 371
+ E VT R+LV S Q+G+L+GKGG +I +R T A IR+ +
Sbjct: 59 DYNDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCAL 118
Query: 372 IPQNEEVVQVTGTLQSVRDALFHITSKIREIIFPLKTPPPNF 413
++E++Q+ G +VR+AL+ + F L P F
Sbjct: 119 ALSHDELLQIIGDPSAVREALYQVA-------FLLYNNPSRF 153
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 51 GGDDRLVTIVGAAEHPASCGGDE----SPARLALIRVFERMVEEES------------TT 94
G D+R+VTI +E D PA AL +V + +V EE +
Sbjct: 9 GCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDYNDNDEYSE 68
Query: 95 SNSAVACTLVAPSYQVGSILGRGGKFAEKIRQESGAQVRVLPKDQP--PLPSPGDEFIQI 152
+ V ++ PS Q+G ++G+GG + +R ++ AQ+RV + P L DE +QI
Sbjct: 69 GQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCALALSHDELLQI 128
Query: 153 TGNFNVVKKALLSVSSCLLDH 173
G+ + V++AL V+ L ++
Sbjct: 129 IGDPSAVREALYQVAFLLYNN 149
>AT5G53060.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21520310 FORWARD LENGTH=198
Length = 198
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 244 VVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIVEAGPDSDERVIVISTRENSDQK- 302
+++LC K G +IGK G+ +++++ TGA I + E P ER+I IS D
Sbjct: 68 TTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDG 127
Query: 303 ----HSPAQEALFRVHCRLTE 319
SPAQEALF VH R+ E
Sbjct: 128 RMPSFSPAQEALFSVHDRILE 148
>AT1G33680.1 | Symbols: | KH domain-containing protein |
chr1:12204056-12208282 FORWARD LENGTH=763
Length = 763
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 37/202 (18%)
Query: 231 SAGPSHRMFVE-EEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQI---VEAGPDS 286
+ G +H+ + + ++ KVG+LIGKGG VR LQ +GA IQI EA P S
Sbjct: 218 NGGSTHKEVDDTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSS 277
Query: 287 DER-VIVISTRENSDQKHSPAQEALFRVHCRLTEIGFEQSNAVTAR-------LLVRSPQ 338
R V +I T S ++A ++ + E+ A+ AR + V S +
Sbjct: 278 ALRPVEIIGTV-------SCIEKAEKLINAVIAEVEAGGVPALAARGVPEQMEIKVPSDK 330
Query: 339 VGFLLGKGGHVISEMRRATGASIRIFSKEQIKYIPQN------EEVVQVTGTLQSVRDAL 392
VG ++G+GG I M + S+ +I+ IPQN E V+++G + + A
Sbjct: 331 VGVIIGRGGETIKNM--------QTKSRARIQLIPQNEGDASKERTVRISGDKRQIDIA- 381
Query: 393 FHITSKIREIIFPLKTPPPNFG 414
T+ I+++++ P P G
Sbjct: 382 ---TALIKDVMYQDGRPSPYSG 400
>AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=334
Length = 334
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 7/177 (3%)
Query: 229 PESAGPSHRMFVEEEVVFKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIV---EAGPD 285
PE S E+ + L GS+IGKGGS + Q ++GA IQ+ E P
Sbjct: 20 PEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPG 79
Query: 286 SDERVIVISTRENSDQKHSPAQEALFRVHCRL-TEIGFEQSNAVTARLLVRSPQVGFLLG 344
+ +R+I+IS + + + + L ++H L E G E RL+V + G ++G
Sbjct: 80 TTDRIIMISG--SIKEVVNGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIG 137
Query: 345 KGGHVISEMRRATGASIRIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIRE 401
KGG I + A I+I + Y ++ +V ++GT + A+ I +K+ E
Sbjct: 138 KGGATIKSFIEESKAGIKISPLDNTFY-GLSDRLVTLSGTFEEQMRAIDLILAKLTE 193
>AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=313
Length = 313
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 246 FKLLCQQDKVGSLIGKGGSGVRALQNETGASIQIV---EAGPDSDERVIVISTRENSDQK 302
+ L GS+IGKGGS + Q ++GA IQ+ E P + +R+I+IS + +
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISG--SIKEV 94
Query: 303 HSPAQEALFRVHCRL-TEIGFEQSNAVTARLLVRSPQVGFLLGKGGHVISEMRRATGASI 361
+ + L ++H L E G E RL+V + G ++GKGG I + A I
Sbjct: 95 VNGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGI 154
Query: 362 RIFSKEQIKYIPQNEEVVQVTGTLQSVRDALFHITSKIRE 401
+I + Y ++ +V ++GT + A+ I +K+ E
Sbjct: 155 KISPLDNTFY-GLSDRLVTLSGTFEEQMRAIDLILAKLTE 193