Miyakogusa Predicted Gene

Lj3g3v2042220.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2042220.4 Non Chatacterized Hit- tr|D8TQL3|D8TQL3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,45.83,3e-18,RRM_1,RNA recognition motif domain; RNA-BINDING
PROTEIN,NULL; seg,NULL; RNA recognition motif,RNA re,CUFF.43498.4
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21215.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   227   5e-60
AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    64   1e-10

>AT3G21215.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:7442873-7445231 REVERSE LENGTH=339
          Length = 339

 Score =  227 bits (579), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 129/210 (61%)

Query: 1   MGFALFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRL 60
           MGFALFS+   A+AAKD LQ M+FD E+KSV+HTEMAKKNLF+KRGI  D+ A+DQSKRL
Sbjct: 98  MGFALFSTAQFAMAAKDTLQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRL 157

Query: 61  RTAGDYTHTGYVTXXXXXXXXXXXXXXHGYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RT GD TH+ Y                HGYM                             
Sbjct: 158 RTGGDCTHSVYSPSPFHPPPPPVWGPPHGYMAPAPPPYDPYAGYHAPPVPMPTPPPIAAP 217

Query: 121 XXXXXXQNTKDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEF 180
                 QN KDNPPCNTLF            ++ L S QPGFKQMKILRQERHTVCFIEF
Sbjct: 218 SSYVPVQNIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEF 277

Query: 181 EDVNSAANVHHTLQGAVIPSSGSVGMRIQY 210
           EDVNSA NVHH LQGAVIPSSGS+GMRIQY
Sbjct: 278 EDVNSATNVHHNLQGAVIPSSGSIGMRIQY 307


>AT2G42240.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17596844-17598911 FORWARD LENGTH=302
          Length = 302

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 2   GFALFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRLR 61
            FA+FS    A+A    L  M+FD E  S LH ++AK N   KR    D   ++  K+L+
Sbjct: 91  AFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDG--WESLKKLK 148

Query: 62  TAGDYTHTGYVTXXXXXXXXXXXXXXHGYMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
           +    T +G+ +               GY                               
Sbjct: 149 SWNTTTESGFGSFQTPGMSSSAYNTI-GY-----------------SPAQSQGIANVAGR 190

Query: 122 XXXXXQNTKDNPPCNTLFXXXXXXXXXXXXVKGLFSVQPGFKQMKILRQERHTVCFIEFE 181
                + +K   PC TLF            +  +FS   GF ++KI       V F++F+
Sbjct: 191 APTSRKPSKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQ 250

Query: 182 DVNSAANVHHTLQGAVIPSS--GSVGMRIQYPFL 213
           DV+ ++   HTLQG V+ SS  G V +R+QYP L
Sbjct: 251 DVSCSSEALHTLQGTVLYSSLTGEV-LRLQYPSL 283