Miyakogusa Predicted Gene

Lj3g3v2038710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2038710.1 CUFF.43468.1
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46910.1 | Symbols:  | Plastid-lipid associated protein PAP /...   298   2e-81

>AT2G46910.1 | Symbols:  | Plastid-lipid associated protein PAP /
           fibrillin family protein | chr2:19272427-19273856
           FORWARD LENGTH=284
          Length = 284

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/250 (61%), Positives = 189/250 (75%), Gaps = 7/250 (2%)

Query: 28  HVKSFPRKMSLSMATAQA---YDSEL--ENKKLQLLTSIQDTQRGLLTTPDQRFSIEEAL 82
           H K F  +++++     A    D+EL  E+KK  LL ++QDTQRGL  T DQR  IEEAL
Sbjct: 33  HRKRFSCRVAVASGETSARVVVDNELDLEHKKHDLLRAVQDTQRGLTATSDQRSIIEEAL 92

Query: 83  VNVEGCNKGDPINLNKLDGTWRLQYTSASDVLVLFEAAARLPFFQVGQIFQKFECRDESN 142
           V VEG N G+ I+  KLDGTWRLQYTSA DV+VLFEAA+RLPFFQVGQ+FQKFECRD S+
Sbjct: 93  VTVEGFNGGEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSD 152

Query: 143 GGVIRNVVRWSVPNLLEEQDGATLLVSAKFTVVSVRNIYLQFQEITLQDININEXXXXXX 202
           GG+IRNVV+WS+P+LLEEQ+GATL+V+AKF  VS RNIYLQF+EI++++ININE      
Sbjct: 153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALI 212

Query: 203 XXXXXXRSYLSLQILQFLRAFKAQIPVR--DPGRQSVGGLYYLSYLDDNMLLGRAXXXXX 260
                 RS+LSLQ+LQF+R FKAQIPV    PGR+SVGGLYYLSYLD+NMLLGR+     
Sbjct: 213 APAILPRSFLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGG 272

Query: 261 XXXXTRAQSL 270
               T++Q L
Sbjct: 273 VFVFTKSQPL 282