Miyakogusa Predicted Gene

Lj3g3v2037550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2037550.1 Non Chatacterized Hit- tr|B8AFU1|B8AFU1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,65.33,1e-17,Reticulon,Reticulon,CUFF.43462.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78895.1 | Symbols:  | Reticulon family protein | chr1:296583...   231   3e-61
AT1G16825.1 | Symbols:  | Reticulon family protein | chr1:575887...   210   5e-55

>AT1G78895.1 | Symbols:  | Reticulon family protein |
           chr1:29658313-29659866 REVERSE LENGTH=164
          Length = 164

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 129/145 (88%)

Query: 20  EMGKAIIALVCGTLVYYHCAYRNSTVVSLFSDVFIVLLCSLAILGLLFRQMNIQVPVDPL 79
           EMGKA+  L+ GTLVYYHCAYRN+T++SLFSDVFIVLLCSLAILGLLFRQ+N+ VPVDPL
Sbjct: 3   EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62

Query: 80  EWQISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKVILCLYVLSAIGRLALGIT 139
           EWQISQDTA+ IVA LANTVGAAE VLRVAATGHDKRLF KV++CLY LSA+GRL  G+T
Sbjct: 63  EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLYFLSALGRLISGVT 122

Query: 140 IAYAGLCLFCLYMLAECSQSISSGV 164
           +AYAGLCLFCL ML + SQS+ + V
Sbjct: 123 VAYAGLCLFCLSMLCQTSQSLGNCV 147


>AT1G16825.1 | Symbols:  | Reticulon family protein |
           chr1:5758877-5760340 FORWARD LENGTH=155
          Length = 155

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 118/138 (85%)

Query: 20  EMGKAIIALVCGTLVYYHCAYRNSTVVSLFSDVFIVLLCSLAILGLLFRQMNIQVPVDPL 79
           EMGKAI  L+ GTLVY+HCA RN+T++SL SDV IVLL SLAILGLLFR +N+ VPVDPL
Sbjct: 3   EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62

Query: 80  EWQISQDTANAIVACLANTVGAAESVLRVAATGHDKRLFFKVILCLYVLSAIGRLALGIT 139
           EWQISQDTA  IVA LANTVGAAESVLRVAATGHDKRLF KV++CLY L+A+GR+  G+T
Sbjct: 63  EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVKVVICLYFLAALGRIISGVT 122

Query: 140 IAYAGLCLFCLYMLAECS 157
           IAYAGLCLFCL ML   S
Sbjct: 123 IAYAGLCLFCLSMLFRSS 140