Miyakogusa Predicted Gene

Lj3g3v2004940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2004940.1 Non Chatacterized Hit- tr|D7U8E8|D7U8E8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.33,0.00000000001,zf-LSD1,Zinc finger, LSD1-type; FAMILY NOT
NAMED,NULL; seg,NULL; LSD1: zinc finger domain, LSD1 subc,CUFF.43519.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32540.1 | Symbols: LOL1 | lsd one like 1 | chr1:11768253-117...   233   3e-62
AT1G32540.3 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...   231   1e-61
AT1G32540.2 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...   231   1e-61
AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   8e-32
AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   8e-32
AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   1e-31
AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   1e-31
AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   1e-31
AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   1e-31
AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   1e-31
AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   124   2e-29
AT4G21610.1 | Symbols: LOL2 | lsd one like 2 | chr4:11489069-114...   100   3e-22

>AT1G32540.1 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768253-11769591 FORWARD LENGTH=187
          Length = 187

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/123 (92%), Positives = 118/123 (95%)

Query: 22  AQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
            QSQLVCSGCRNLL+YPVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRGAT
Sbjct: 64  GQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 123

Query: 82  SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTTEQ 141
           SVQCSCCHTVNLALEANQVAHVNCGNC MLLMYQYGARSVKCAVCNFVTSVG S STT+ 
Sbjct: 124 SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTSTTDS 183

Query: 142 KFS 144
           KF+
Sbjct: 184 KFN 186


>AT1G32540.3 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score =  231 bits (589), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/123 (92%), Positives = 118/123 (95%)

Query: 22  AQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
            QSQLVCSGCRNLL+YPVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRGAT
Sbjct: 31  GQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 90

Query: 82  SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTTEQ 141
           SVQCSCCHTVNLALEANQVAHVNCGNC MLLMYQYGARSVKCAVCNFVTSVG S STT+ 
Sbjct: 91  SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTSTTDS 150

Query: 142 KFS 144
           KF+
Sbjct: 151 KFN 153


>AT1G32540.2 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score =  231 bits (589), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/123 (92%), Positives = 118/123 (95%)

Query: 22  AQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
            QSQLVCSGCRNLL+YPVGATSVCCAVCNAVT+VPPPGTEMAQLVCGGCHTLLMYIRGAT
Sbjct: 31  GQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 90

Query: 82  SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGTSASTTEQ 141
           SVQCSCCHTVNLALEANQVAHVNCGNC MLLMYQYGARSVKCAVCNFVTSVG S STT+ 
Sbjct: 91  SVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTSTTDS 150

Query: 142 KFS 144
           KF+
Sbjct: 151 KFN 153


>AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 89/124 (71%), Gaps = 11/124 (8%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 81  TSVQCSCCHTVNL-ALEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
           +SV+CSCC T NL    +NQVAH        +NCG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

Query: 132 VGTS 135
           V  S
Sbjct: 127 VNMS 130


>AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 89/124 (71%), Gaps = 11/124 (8%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 81  TSVQCSCCHTVNL-ALEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
           +SV+CSCC T NL    +NQVAH        +NCG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

Query: 132 VGTS 135
           V  S
Sbjct: 127 VNMS 130


>AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 89/124 (71%), Gaps = 11/124 (8%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 81  TSVQCSCCHTVNL-ALEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
           +SV+CSCC T NL    +NQVAH        +NCG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

Query: 132 VGTS 135
           V  S
Sbjct: 122 VNMS 125


>AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 89/124 (71%), Gaps = 11/124 (8%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 81  TSVQCSCCHTVNL-ALEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
           +SV+CSCC T NL    +NQVAH        +NCG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

Query: 132 VGTS 135
           V  S
Sbjct: 122 VNMS 125


>AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 89/124 (71%), Gaps = 11/124 (8%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 81  TSVQCSCCHTVNL-ALEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
           +SV+CSCC T NL    +NQVAH        +NCG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

Query: 132 VGTS 135
           V  S
Sbjct: 122 VNMS 125


>AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 89/124 (71%), Gaps = 11/124 (8%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 81  TSVQCSCCHTVNL-ALEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
           +SV+CSCC T NL    +NQVAH        +NCG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

Query: 132 VGTS 135
           V  S
Sbjct: 122 VNMS 125


>AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 89/124 (71%), Gaps = 11/124 (8%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 81  TSVQCSCCHTVNL-ALEANQVAH--------VNCGNCRMLLMYQYGARSVKCAVCNFVTS 131
           +SV+CSCC T NL    +NQVAH        +NCG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

Query: 132 VGTS 135
           V  S
Sbjct: 122 VNMS 125


>AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=210
          Length = 210

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 90/150 (60%), Gaps = 37/150 (24%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 81  TSVQCSCCHTVNLALE---------------------------ANQVAH--------VNC 105
           +SV+CSCC T NL  E                           +NQVAH        +NC
Sbjct: 62  SSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQINC 121

Query: 106 GNCRMLLMYQYGARSVKCAVCNFVTSVGTS 135
           G+CR  LMY YGA SVKCAVC FVT+V  S
Sbjct: 122 GHCRTTLMYPYGASSVKCAVCQFVTNVNMS 151



 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 64  QLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEA---NQVAHVNCGNCRMLLMYQYGARS 120
           QLVC GC  LLMY RGA++V+C+ C+T+N+       + +AH+ CG CR +LMY  GA S
Sbjct: 4   QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASS 63

Query: 121 VKCAVCNFVTSVGTSAST 138
           V+C+ C     V  S+ T
Sbjct: 64  VRCSCCQTTNLVPESSFT 81


>AT4G21610.1 | Symbols: LOL2 | lsd one like 2 |
           chr4:11489069-11490300 FORWARD LENGTH=155
          Length = 155

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 64/97 (65%), Gaps = 2/97 (2%)

Query: 36  VYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAL 95
           V P    ++  AV    T+V  P  E AQ+VCG C  LL Y+RG+  V+CS C TVNL L
Sbjct: 34  VLPPPIVTITAAVNPNPTTVEIP--EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVL 91

Query: 96  EANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 132
           EANQV  VNC NC++LLMY YGA +V+C+ CN VT +
Sbjct: 92  EANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDI 128



 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 23  QSQLVCSGCRNLLVYPVGATSVCCAVCNAVTSVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
           ++Q+VC  CR LL Y  G+  V C+ C  V  V     ++ Q+ C  C  LLMY  GA +
Sbjct: 58  KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLE-ANQVGQVNCNNCKLLLMYPYGAPA 116

Query: 83  VQCSCCHTVNLALEANQ 99
           V+CS C++V    E N+
Sbjct: 117 VRCSSCNSVTDISENNK 133