Miyakogusa Predicted Gene

Lj3g3v1981280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1981280.1 Non Chatacterized Hit- tr|H3DBX9|H3DBX9_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,39.76,2e-18,Smg4_UPF3,Regulator of nonsense-mediated decay,
UPF3; UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PR,CUFF.43387.1
         (535 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33980.1 | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein ...   389   e-108
AT1G33980.2 | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein ...   382   e-106

>AT1G33980.1 | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein |
           chr1:12351719-12354401 FORWARD LENGTH=482
          Length = 482

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/531 (46%), Positives = 320/531 (60%), Gaps = 57/531 (10%)

Query: 8   ERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGNTSHKHQRYSRAYIDFKHPND 67
           ++ KVV+RHLPPSL+ SDL+ QID  FA RYNW SFRPG +S+K+Q+YSRAY+ FK P D
Sbjct: 6   QKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSFKAPED 65

Query: 68  VFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKKDGREGSIYKDPDYLEFLKLI 127
           V+EFA FF+GHVFVNEKGAQ KA+VEYAPSQRVPKP  KKD REGSI KDPDYLEFLK+I
Sbjct: 66  VYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLEFLKVI 125

Query: 128 AKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSGVQVSSAATKISRR 187
           A+P E+LPSAEIQLERREAEQ+GA+K  P+VTPLME++RQKRA   G Q  S   +  RR
Sbjct: 126 AQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIRRGGRR 185

Query: 188 ARAALPGKPGSGNAKRGSEKKKYVQKDNAKIANRKELRDKSAFIAVPRREDQSAESSAKG 247
            R     KP    +KR SEKKKYV+K+++K   RK   D    ++  + + + + SS K 
Sbjct: 186 TRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD----VSSSKPDYRQSNSSGKE 241

Query: 248 TSEIETLHGIEGPISGIPLTSDSXXXXXXXXXXXQREIPNAAEGMVKQQNVQSGSSLVST 307
               ET   I+    GI LT DS            R+          +Q++ +  S  ST
Sbjct: 242 LPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDN-PDNPPPQPEQHIDTNLSRNST 300

Query: 308 SAKQTQRREGSGRLIRSILQNNEPRQSQSASGTQP--KIQILTSENGKRPPRPFISRSGL 365
            ++Q Q+ +  GRLI+ IL  N+ R SQS++  Q   +++   +EN KRP RP  +R+G 
Sbjct: 301 DSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRAG- 359

Query: 366 SDQVSSHDAGQVNSEGDSKRVSDEKFIKRDLHGSGSVSEKTERRTRNKDRPDRGVWAPLR 425
                                       +D H SG++SEK ERRTRNKDRPDR +WAP R
Sbjct: 360 ----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWAPRR 391

Query: 426 RSDVSHSGNEHPSSSWSQTTLSNPESVEGEVKESVPSGNRSPEFSASAVGRGSPSVENGS 485
                    + P SS             GEVK+ + S  RS E   S+ G    ++ENGS
Sbjct: 392 -----DGSEDQPLSSAGNN---------GEVKDRMFS-QRSGEVVNSSGGH---TLENGS 433

Query: 486 QRNFTRRGASYIVKDEGAVSLSEGKPSKKGVAGN-SAHEKQVWVQKSSSGS 535
            R+ +RR      K+E  V + EGK S++G  G  S+HEKQ+W+QK SSG+
Sbjct: 434 ARHSSRRVGGRNRKEE--VVIGEGKTSRRGSGGGPSSHEKQMWIQKPSSGT 482


>AT1G33980.2 | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein |
           chr1:12351719-12354401 FORWARD LENGTH=484
          Length = 484

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/533 (46%), Positives = 319/533 (59%), Gaps = 59/533 (11%)

Query: 8   ERTKVVIRHLPPSLTHSDLIQQIDNHFASRYNWFSFRPGNT--SHKHQRYSRAYIDFKHP 65
           ++ KVV+RHLPPSL+ SDL+ QID  FA RYNW SFRPG +   +K+Q+YSRAY+ FK P
Sbjct: 6   QKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYVSFKAP 65

Query: 66  NDVFEFAEFFHGHVFVNEKGAQHKALVEYAPSQRVPKPGTKKDGREGSIYKDPDYLEFLK 125
            DV+EFA FF+GHVFVNEKGAQ KA+VEYAPSQRVPKP  KKD REGSI KDPDYLEFLK
Sbjct: 66  EDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLEFLK 125

Query: 126 LIAKPEEHLPSAEIQLERREAEQAGANKEPPVVTPLMEYVRQKRALGSGVQVSSAATKIS 185
           +IA+P E+LPSAEIQLERREAEQ+GA+K  P+VTPLME++RQKRA   G Q  S   +  
Sbjct: 126 VIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIRRGG 185

Query: 186 RRARAALPGKPGSGNAKRGSEKKKYVQKDNAKIANRKELRDKSAFIAVPRREDQSAESSA 245
           RR R     KP    +KR SEKKKYV+K+++K   RK   D    ++  + + + + SS 
Sbjct: 186 RRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD----VSSSKPDYRQSNSSG 241

Query: 246 KGTSEIETLHGIEGPISGIPLTSDSXXXXXXXXXXXQREIPNAAEGMVKQQNVQSGSSLV 305
           K     ET   I+    GI LT DS            R+          +Q++ +  S  
Sbjct: 242 KELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDN-PDNPPPQPEQHIDTNLSRN 300

Query: 306 STSAKQTQRREGSGRLIRSILQNNEPRQSQSASGTQP--KIQILTSENGKRPPRPFISRS 363
           ST ++Q Q+ +  GRLI+ IL  N+ R SQS++  Q   +++   +EN KRP RP  +R+
Sbjct: 301 STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRA 360

Query: 364 GLSDQVSSHDAGQVNSEGDSKRVSDEKFIKRDLHGSGSVSEKTERRTRNKDRPDRGVWAP 423
           G                             +D H SG++SEK ERRTRNKDRPDR +WAP
Sbjct: 361 G-----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWAP 391

Query: 424 LRRSDVSHSGNEHPSSSWSQTTLSNPESVEGEVKESVPSGNRSPEFSASAVGRGSPSVEN 483
            R         + P SS             GEVK+ + S  RS E   S+ G    ++EN
Sbjct: 392 RR-----DGSEDQPLSSAGNN---------GEVKDRMFS-QRSGEVVNSSGGH---TLEN 433

Query: 484 GSQRNFTRRGASYIVKDEGAVSLSEGKPSKKGVAGN-SAHEKQVWVQKSSSGS 535
           GS R+ +RR      K+E  V + EGK S++G  G  S+HEKQ+W+QK SSG+
Sbjct: 434 GSARHSSRRVGGRNRKEE--VVIGEGKTSRRGSGGGPSSHEKQMWIQKPSSGT 484