Miyakogusa Predicted Gene
- Lj3g3v1981190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1981190.1 Non Chatacterized Hit- tr|I1KFY2|I1KFY2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50890 PE,93.54,0,no
description,Nucleotide-binding, alpha-beta plait; SPLICING FACTOR U2AF
LARGE SUBUNIT,NULL; RNA-BI,CUFF.43705.1
(600 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 644 0.0
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 644 0.0
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 639 0.0
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 552 e-157
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 549 e-156
AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 157 2e-38
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 72 2e-12
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 67 3e-11
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 67 4e-11
AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 4e-11
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 64 4e-10
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 60 3e-09
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 59 7e-09
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 57 5e-08
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 56 8e-08
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 56 8e-08
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 56 8e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-08
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 53 5e-07
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 52 9e-07
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 9e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT2G33440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 3e-06
AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing p... 51 3e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 50 4e-06
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 50 5e-06
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 7e-06
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-05
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/402 (78%), Positives = 358/402 (89%), Gaps = 6/402 (1%)
Query: 201 SGFDMAPPASAMLAGASAVTGQIPGANPAIPG--MFPNMFPLATSQMQPFSALPVMPVQA 258
SGFDMAPPASAMLA +AVTGQ+P A P +PG MFPNMFPL T Q F L +MP+QA
Sbjct: 150 SGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQ--SFGGLSMMPIQA 207
Query: 259 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFA 318
MTQQATRHARRVYVGGL PTANEQSVATFFSQVMA +GGNTAGPGDAVVNVYINH+KKFA
Sbjct: 208 MTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFA 267
Query: 319 FVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTP 378
FVEMRSVEEASNAM+LDGIIFEGAPVKVRRP+DYNPSLAATLGPSQP+P+LNL AVGLTP
Sbjct: 268 FVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTP 327
Query: 379 GSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQD 438
G++GGL+GPDRIFVGGLPYYFTE+Q+RELLE+FG L+GFDLVKDRETGNSKGYAFCVYQD
Sbjct: 328 GASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 387
Query: 439 LAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPA 498
L+VTDIACAALNGIKMGDKTLTVRRANQG Q KPEQE++L+HAQQQIA Q++MLQP
Sbjct: 388 LSVTDIACAALNGIKMGDKTLTVRRANQGTMLQ--KPEQENVLLHAQQQIAFQRVMLQPG 445
Query: 499 LVATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVG 558
VAT VVCLT V+ DEL++DE+Y +I++DMRQE KFG L NVVIPRP P+GE + G+G
Sbjct: 446 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLG 505
Query: 559 KVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQG 600
KVFL+Y D DG+T+AR G+NGRKFGGN+V+AV+Y E+KF QG
Sbjct: 506 KVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQG 547
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/402 (78%), Positives = 358/402 (89%), Gaps = 6/402 (1%)
Query: 201 SGFDMAPPASAMLAGASAVTGQIPGANPAIPG--MFPNMFPLATSQMQPFSALPVMPVQA 258
SGFDMAPPASAMLA +AVTGQ+P A P +PG MFPNMFPL T Q F L +MP+QA
Sbjct: 172 SGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQ--SFGGLSMMPIQA 229
Query: 259 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFA 318
MTQQATRHARRVYVGGL PTANEQSVATFFSQVMA +GGNTAGPGDAVVNVYINH+KKFA
Sbjct: 230 MTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFA 289
Query: 319 FVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTP 378
FVEMRSVEEASNAM+LDGIIFEGAPVKVRRP+DYNPSLAATLGPSQP+P+LNL AVGLTP
Sbjct: 290 FVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTP 349
Query: 379 GSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQD 438
G++GGL+GPDRIFVGGLPYYFTE+Q+RELLE+FG L+GFDLVKDRETGNSKGYAFCVYQD
Sbjct: 350 GASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
Query: 439 LAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPA 498
L+VTDIACAALNGIKMGDKTLTVRRANQG Q KPEQE++L+HAQQQIA Q++MLQP
Sbjct: 410 LSVTDIACAALNGIKMGDKTLTVRRANQGTMLQ--KPEQENVLLHAQQQIAFQRVMLQPG 467
Query: 499 LVATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVG 558
VAT VVCLT V+ DEL++DE+Y +I++DMRQE KFG L NVVIPRP P+GE + G+G
Sbjct: 468 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLG 527
Query: 559 KVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQG 600
KVFL+Y D DG+T+AR G+NGRKFGGN+V+AV+Y E+KF QG
Sbjct: 528 KVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQG 569
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/401 (78%), Positives = 348/401 (86%), Gaps = 7/401 (1%)
Query: 202 GFDMAPPASAMLAGASAVTGQIPG--ANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAM 259
GFDMAPP + A A A GQ+P IPGMF NMFP+ Q ALPV+PVQAM
Sbjct: 190 GFDMAPP-DMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQ--LGALPVLPVQAM 246
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAF 319
TQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+ IGGNTAGPGDAVVNVYINH+KKFAF
Sbjct: 247 TQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAF 306
Query: 320 VEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPG 379
VEMRSVEEASNAMALDGII EG PVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGL+ G
Sbjct: 307 VEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSG 366
Query: 380 SAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 439
S GGL+GPDRIFVGGLPYYFTE QIRELLE+FGPLRGF+LVKDRETGNSKGYAFCVYQD
Sbjct: 367 STGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDP 426
Query: 440 AVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPAL 499
+VTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE +L++AQQQIALQ+LM QP
Sbjct: 427 SVTDIACAALNGIKMGDKTLTVRRAIQGA--IQPKPEQEEVLLYAQQQIALQRLMFQPGG 484
Query: 500 VATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGK 559
TK+VCLT V+AD+L++DE+Y EI++DMRQE KFG LVNVVIPRP PD + PGVGK
Sbjct: 485 TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGK 544
Query: 560 VFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQG 600
VFLEY DVDG++KAR+G+NGRKFGGNQV+AV+Y E+K+AQG
Sbjct: 545 VFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQG 585
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/339 (80%), Positives = 305/339 (89%), Gaps = 6/339 (1%)
Query: 201 SGFDMAPPASAMLAGASAVTGQIPGANPAIPG--MFPNMFPLATSQMQPFSALPVMPVQA 258
SGFDMAPPASAMLA +AVTGQ+P A P +PG MFPNMFPL T Q F L +MP+QA
Sbjct: 172 SGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQ--SFGGLSMMPIQA 229
Query: 259 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFA 318
MTQQATRHARRVYVGGL PTANEQSVATFFSQVMA +GGNTAGPGDAVVNVYINH+KKFA
Sbjct: 230 MTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFA 289
Query: 319 FVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTP 378
FVEMRSVEEASNAM+LDGIIFEGAPVKVRRP+DYNPSLAATLGPSQP+P+LNL AVGLTP
Sbjct: 290 FVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTP 349
Query: 379 GSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQD 438
G++GGL+GPDRIFVGGLPYYFTE+Q+RELLE+FG L+GFDLVKDRETGNSKGYAFCVYQD
Sbjct: 350 GASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
Query: 439 LAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPA 498
L+VTDIACAALNGIKMGDKTLTVRRANQG Q KPEQE++L+HAQQQIA Q++MLQP
Sbjct: 410 LSVTDIACAALNGIKMGDKTLTVRRANQGTMLQ--KPEQENVLLHAQQQIAFQRVMLQPG 467
Query: 499 LVATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFG 537
VAT VVCLT V+ DEL++DE+Y +I++DMRQE KFG
Sbjct: 468 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFG 506
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 273/338 (80%), Positives = 304/338 (89%), Gaps = 6/338 (1%)
Query: 201 SGFDMAPPASAMLAGASAVTGQIPGANPAIPG--MFPNMFPLATSQMQPFSALPVMPVQA 258
SGFDMAPPASAMLA +AVTGQ+P A P +PG MFPNMFPL T Q F L +MP+QA
Sbjct: 172 SGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQ--SFGGLSMMPIQA 229
Query: 259 MTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFA 318
MTQQATRHARRVYVGGL PTANEQSVATFFSQVMA +GGNTAGPGDAVVNVYINH+KKFA
Sbjct: 230 MTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFA 289
Query: 319 FVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTP 378
FVEMRSVEEASNAM+LDGIIFEGAPVKVRRP+DYNPSLAATLGPSQP+P+LNL AVGLTP
Sbjct: 290 FVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTP 349
Query: 379 GSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQD 438
G++GGL+GPDRIFVGGLPYYFTE+Q+RELLE+FG L+GFDLVKDRETGNSKGYAFCVYQD
Sbjct: 350 GASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQD 409
Query: 439 LAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPA 498
L+VTDIACAALNGIKMGDKTLTVRRANQG Q KPEQE++L+HAQQQIA Q++MLQP
Sbjct: 410 LSVTDIACAALNGIKMGDKTLTVRRANQGTMLQ--KPEQENVLLHAQQQIAFQRVMLQPG 467
Query: 499 LVATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKF 536
VAT VVCLT V+ DEL++DE+Y +I++DMRQE KF
Sbjct: 468 AVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKF 505
>AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22395058-22395603 REVERSE LENGTH=111
Length = 111
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 89/107 (83%)
Query: 494 MLQPALVATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQ 553
MLQP TK+VCLT V+AD+L++D +Y +I++DM QE KFG LVNVVIPRP PD +
Sbjct: 1 MLQPGGTPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDP 60
Query: 554 LPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQG 600
PGVGKVFLEY DVDG++KAR+G+NGRKFGGNQV+AV+Y E+K+AQG
Sbjct: 61 TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQG 107
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 144/382 (37%), Gaps = 86/382 (22%)
Query: 265 RHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRS 324
R R V+ +P A E+ V FFS+ +++ K ++E
Sbjct: 165 RDQRTVFAYQMPLKATERDVYEFFSKA------GKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Query: 325 VEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGL 384
V A+AL G +F G PV V+ PS+ NL + T G G
Sbjct: 219 VMSVPMAIALSGQLFLGQPVMVK--------------PSEAEKNL-AQSNSTTVGGTGPA 263
Query: 385 DGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDI 444
D +++VG L + +E Q+R++ E FGP+ L D ETG KG+ F + L +
Sbjct: 264 D--RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKA 321
Query: 445 ACAALNG-IKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQ---KLMLQPAL- 499
A ALNG +++ +T+ V + Q P+ +AL + ML L
Sbjct: 322 AQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQKLD 381
Query: 500 ---VATKVV---------------------------------------------CLTHAV 511
+AT +V CL
Sbjct: 382 RSGIATSIVGSLGVPGLNGAAFNQPGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKN 441
Query: 512 SADELKEDE-DYE-EILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVFLEYVDVDG 569
D E E +++ EI DD+ ECSK+G + ++ + + G V+L + V+
Sbjct: 442 MFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDK--------NSAGFVYLRFQSVEA 493
Query: 570 ATKARAGLNGRKFGGNQVIAVF 591
A A+ ++ R F + A F
Sbjct: 494 AAAAQRAMHMRWFAQKMISATF 515
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+FVG +PY TE Q+RE+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 450 NGIKMGDKTLTV 461
++ + L V
Sbjct: 71 QSYEINGRQLRV 82
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 48/203 (23%)
Query: 270 VYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDK------KFAFVEMR 323
VYVGGL +E+ + F Q AGP VVNVY+ D+ + F+E R
Sbjct: 27 VYVGGLDAQLSEELLWELFVQ---------AGP---VVNVYVPKDRVTNLHQNYGFIEYR 74
Query: 324 SVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAG 382
S E+A A+ L+ I G P++V + SQ +L++GA
Sbjct: 75 SEEDADYAIKVLNMIKLHGKPIRVNKA-------------SQDKKSLDVGA--------- 112
Query: 383 GLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGF-DLVKDRETGNSKGYAFCVYQDLAV 441
+F+G L E + + FG + +++D +TGNS+G+ F Y
Sbjct: 113 ------NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEA 166
Query: 442 TDIACAALNGIKMGDKTLTVRRA 464
+D A ++ G + ++ +TV A
Sbjct: 167 SDAAIESMTGQYLSNRQITVSYA 189
>AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14166037-14169492 FORWARD LENGTH=979
Length = 979
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 262 QATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVE 321
++TR RR+Y +P +A+E+S+ F+ M G N + ++ IN +K A VE
Sbjct: 872 ESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVE 931
Query: 322 MRSVEEASNAMALDGIIFEGAPVKVRRPTDY 352
+ ++AS A++LDG F G+ +K+RRP DY
Sbjct: 932 FLTPQDASAALSLDGCSFAGSNLKIRRPKDY 962
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 26/198 (13%)
Query: 269 RVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 328
+++VG LP + Q++A F Q T + + N + + F FV M +VEEA
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQ------AGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 329 SNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPD 388
A+ F V RR T + + QP D
Sbjct: 168 EKAVEK----FNSFEVNGRRLTVNRAAPRGSRPERQPRV----------------YDAAF 207
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
RI+VG LP+ ++ L G + +V DRETG S+G+ F + ++A AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 449 LNGIKMGDKTLTVRRANQ 466
L+G + + + V A +
Sbjct: 268 LDGQNLEGRAIKVNVAEE 285
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 260 TQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDK---- 315
T QA+ R+YVG LP T ++ F G VV+V I +DK
Sbjct: 108 TTQASGEEGRLYVGNLPYTITSSELSQIF------------GEAGTVVDVQIVYDKVTDR 155
Query: 316 --KFAFVEMRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLN-L 371
F FV M S+EEA AM + + G VKV P P N +
Sbjct: 156 SRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFP-------------EVPRGGENEV 202
Query: 372 GAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGY 431
+ + +D P +++ G L + T +++ + G ++ +R TG S+G+
Sbjct: 203 MRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGF 262
Query: 432 AFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQE 478
F ++ A A +NG+++ + L + A++ P P E
Sbjct: 263 GFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVE 309
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 28/199 (14%)
Query: 269 RVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 328
+++VG L N Q++A F Q T + + N + + F FV M SV+EA
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQ------AGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 329 SNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPD 388
A+ K R D N L T+ + P G P A + P
Sbjct: 205 ETAVE-----------KFNR-YDLNGRLL-TVNKAAPR--------GSRPERAPRVYEPA 243
Query: 389 -RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 447
R++VG LP+ ++ +L G + +V DRETG S+G+ F D+ + A +
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 448 ALNGIKMGDKTLTVRRANQ 466
AL+G + + + V A +
Sbjct: 304 ALDGQNLEGRAIRVNVAEE 322
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 60/323 (18%)
Query: 268 RRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEE 327
+ +++G L +E + + F+Q A + N + + F+E S
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQS------GEATSAKVIRNKLTGQSEGYGFIEFVSHSV 113
Query: 328 ASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGP 387
A + + GAP+ PS T LN G +GP
Sbjct: 114 AERVLQ----TYNGAPM---------PSTEQTF-------RLNWAQAGAGEKRFQ-TEGP 152
Query: 388 DR-IFVGGLPYYFTETQIRELLET-FGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 445
D IFVG L T+ + + + +G ++G +V DR TG SKGY F + D A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 446 CAALNGIKMGDKTLTVR-RANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKV 504
+NG + + + AN+ A P QP Q + +A P V
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDN--------DPNNTTIFV 264
Query: 505 VCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVFLEY 564
L V+ DELK +FG L++V IP PG F++Y
Sbjct: 265 GGLDANVTDDELKSI-------------FGQFGELLHVKIP---------PGKRCGFVQY 302
Query: 565 VDVDGATKARAGLNGRKFGGNQV 587
+ A A + LNG + GG +
Sbjct: 303 ANKASAEHALSVLNGTQLGGQSI 325
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+++G LP + + L +FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 450 NGIKMGDKTLTVRRANQ 466
NG + +TL VR A +
Sbjct: 542 NGYRFEGRTLAVRIAGK 558
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+++G LP + + L +FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 450 NGIKMGDKTLTVRRANQ 466
NG + +TL VR A +
Sbjct: 542 NGYRFEGRTLAVRIAGK 558
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+++G LP + + L +FG + ++KDR TG SKGY F Y D+ + + A A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 450 NGIKMGDKTLTVRRANQ 466
NG + +TL VR A +
Sbjct: 542 NGYRFEGRTLAVRIAGK 558
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 40/246 (16%)
Query: 228 PAIPGMFPNMFPLATSQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPT-ANEQSVAT 286
P++ G F + ++ P++ A ++ ARRVY+G +P T NEQ
Sbjct: 39 PSLAGTFSRS---SRTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQ---- 91
Query: 287 FFSQVMAKIGGNTAGPGDAVVNVYINHDK------KFAFVEMRSVEEASNAMA--LDGII 338
++++ + G AV V + +DK +F F M+SVE+A NA+ L+G
Sbjct: 92 -LTKLVEEHG--------AVEKVQVMYDKYSGRSRRFGFATMKSVEDA-NAVVEKLNGNT 141
Query: 339 FEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYY 398
EG +KV T P +P+L++ L + +D P +++VG L
Sbjct: 142 VEGREIKVN----------ITEKPIASSPDLSV----LQSEDSAFVDSPYKVYVGNLAKT 187
Query: 399 FTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKT 458
T+ + L G + + + T S G+ F + + A ALN + +
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247
Query: 459 LTVRRA 464
+ V +A
Sbjct: 248 IRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 40/246 (16%)
Query: 228 PAIPGMFPNMFPLATSQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPT-ANEQSVAT 286
P++ G F + ++ P++ A ++ ARRVY+G +P T NEQ
Sbjct: 39 PSLAGTFSRS---SRTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQ---- 91
Query: 287 FFSQVMAKIGGNTAGPGDAVVNVYINHDK------KFAFVEMRSVEEASNAMA--LDGII 338
++++ + G AV V + +DK +F F M+SVE+A NA+ L+G
Sbjct: 92 -LTKLVEEHG--------AVEKVQVMYDKYSGRSRRFGFATMKSVEDA-NAVVEKLNGNT 141
Query: 339 FEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYY 398
EG +KV T P +P+L++ L + +D P +++VG L
Sbjct: 142 VEGREIKVN----------ITEKPIASSPDLSV----LQSEDSAFVDSPYKVYVGNLAKT 187
Query: 399 FTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKT 458
T+ + L G + + + T S G+ F + + A ALN + +
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247
Query: 459 LTVRRA 464
+ V +A
Sbjct: 248 IRVNKA 253
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+F+GGLP E +R+L E G + L+KDR++G+SKGYAF ++ V A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 450 NGIKMGDKTL 459
+ + KT+
Sbjct: 178 HSKEFKGKTI 187
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+F+GGLP E +R+L E G + L+KDR++G+SKGYAF ++ V A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 450 NGIKMGDKTL 459
+ + KT+
Sbjct: 178 HSKEFKGKTI 187
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
+F+GGLP E +R+L E G + L+KDR++G+SKGYAF ++ V A L
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 450 NGIKMGDKTL 459
+ + KT+
Sbjct: 158 HSKEFKGKTI 167
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 378 PGSAGGLDGPD----RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAF 433
P AGG D +IFVGG+P TE ++++ +G + +++D ET S+G+ F
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 434 CVYQDLAVTDIACAALNGIKMGDKTLTVRRA 464
++ V D + N I M D + +++A
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQVEIKKA 185
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
+IFVGG+P + + +E FG L+ +++D TG S+G+ F Y+ + D A
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 449 LNGIKMGDKTLTVRRANQGANPQQP 473
N I++ + +++ A P++P
Sbjct: 191 GNRIELSGTQVEIKK----AEPKKP 211
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 364 QPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDR 423
+P+ ++ P S GG+D +IFVGGL T + + +G + ++KDR
Sbjct: 18 KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDR 77
Query: 424 ETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRA 464
+TG +G+ F Y D +V D N I +G K + ++R
Sbjct: 78 KTGQPRGFGFVTYADSSVVDKVIQD-NHIIIG-KQVEIKRT 116
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 80/207 (38%), Gaps = 22/207 (10%)
Query: 385 DGPD-RIFVGGLPYYFTETQIRELL-ETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVT 442
+GPD +FVG L T+ + E + + ++ +V D TG SKGY F + D
Sbjct: 198 NGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENER 257
Query: 443 DIACAALNGIKMGDKTLTVRRA--NQGANPQQPKPEQESILMHAQQQIALQKLMLQPALV 500
A +NG ++ + V A + QQ Q IL Q
Sbjct: 258 SRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGE 317
Query: 501 ATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKV 560
+T + D + E D+RQ S+FG +V+V IP G G
Sbjct: 318 STNATIFVGGIDPDVIDE---------DLRQPFSQFGEVVSVKIP---------VGKGCG 359
Query: 561 FLEYVDVDGATKARAGLNGRKFGGNQV 587
F+++ D A A LNG G N V
Sbjct: 360 FVQFADRKSAEDAIESLNGTVIGKNTV 386
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
R F+GGL + ++ +R+ E +G L +V D+ +G S+G+ F + + D A AA
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 449 LNGIKMGDKTLTVRRA 464
+NG+ + +T+TV +A
Sbjct: 68 MNGMDLDGRTITVDKA 83
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 390 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 449
++VGG+P+ TE + + +G + +L++D+ TG SKG+AF Y+D T +A L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 450 NGIKMGDKTLTVRRANQGANPQQPKPEQES 479
NG + +T+ V + GA + + ++E+
Sbjct: 98 NGALVLGRTIKV--DHCGAYKKHEEEDEET 125
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 38/201 (18%)
Query: 269 RVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHD----KKFAFVEMRS 324
++Y G LP + S +A+I + A P +V V N D + FAFV M +
Sbjct: 86 KLYFGNLPYNVD--------SATLAQIIQDFANP--ELVEVLYNRDTGQSRGFAFVTMSN 135
Query: 325 VEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGG 383
VE+ + + LDG + G +KV +P PN L P
Sbjct: 136 VEDCNIIIDNLDGTEYLGRALKVNFA-------------DKPKPN----KEPLYP----- 173
Query: 384 LDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 443
+ ++FVG L + T + G + G +V D +TG S+GY F Y A +
Sbjct: 174 -ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 444 IACAALNGIKMGDKTLTVRRA 464
A +L+G ++ + + V A
Sbjct: 233 TALESLDGFELEGRAIRVNLA 253
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 378 PGSAGGLDGPD----RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAF 433
P AGG D +IFVGG+P TE ++++ +G + +++D ET S+G+ F
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 434 CVYQDLAVTDIACAALNGIKMGDKTLTVRR 463
++ V D + N I M D +++ +
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQVSLYK 184
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 319 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLT 377
+V M S+ A A+A LDG G ++VR D NP ++ NP + + T
Sbjct: 154 YVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPG-------TRRNPEV----LNST 202
Query: 378 PGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 437
P + +++VG LP++ +R FG + ++ DR+TG ++ +AF +
Sbjct: 203 PKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 262
Query: 438 DLAVTDIACAALNGIKMGDKTLTVR 462
D A + NG + + + VR
Sbjct: 263 SGEERD-AALSFNGTQYEGRRIIVR 286
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
RIFVGGL + TE Q+ + +G + ++ R+TG +G+ F + D D A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 449 LNGIKMGDKTLTVRRA 464
++G ++G+K ++V +A
Sbjct: 73 MHGRELGNKVISVNKA 88
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
RIFVGGL + TE Q+ + +G + ++ R+TG +G+ F + D D A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 449 LNGIKMGDKTLTVRRA 464
++G ++G+K ++V +A
Sbjct: 73 MHGRELGNKVISVNKA 88
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 319 FVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLT 377
+V M S+ A A+A LDG G ++VR D NP ++ NP + + T
Sbjct: 153 YVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPG-------TRRNPEV----LNST 201
Query: 378 PGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQ 437
P + +++VG LP++ +R FG + ++ DR+TG ++ +AF +
Sbjct: 202 PKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 261
Query: 438 DLAVTDIACAALNGIKMGDKTLTVR 462
D A + NG + + + VR
Sbjct: 262 SGEERD-AALSFNGTQYEGRRIIVR 285
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 446
+I+VGGLP+ +R E FG + ++V DRETG S+GY F ++D AC
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRAC 110
>AT2G33440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14171619-14173226 FORWARD LENGTH=322
Length = 322
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 16/145 (11%)
Query: 404 IRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRR 463
+ E++ FGPL+ + V + + ++ AF Y D +VT ACA LNG+++G +T
Sbjct: 2 LMEIVSVFGPLKAYRFVSNNDL--NQRCAFLEYTDGSVTLKACAGLNGMRLGGSVITAVC 59
Query: 464 A--NQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELK--ED 519
A + + P I HA+ + K +L+ L + V ++L +
Sbjct: 60 AFPDASSVAVNENPPFYGIPSHAKPLLGKPKNILK----------LKNVVDPEDLTSFSE 109
Query: 520 EDYEEILDDMRQECSKFGTLVNVVI 544
++ +EIL+D+R EC++FG + ++ I
Sbjct: 110 QEVKEILEDVRLECARFGVIKSINI 134
>AT1G30480.1 | Symbols: DRT111 | D111/G-patch domain-containing
protein | chr1:10790315-10792423 FORWARD LENGTH=387
Length = 387
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 502 TKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVF 561
T+V+ L + V ++ + E+ D++ EC K+GT+ V+I + ++F
Sbjct: 282 TRVLLLRNMVGPGQVDD-----ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIF 336
Query: 562 LEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQ 599
+++ + TKA L+GR FGG V A FY E KF++
Sbjct: 337 VQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSK 374
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
++F+GG+ Y E +RE +G + ++ DRETG S+G+ F + A A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 449 LNGIKMGDKTLTVRRAN 465
L+G + + + V AN
Sbjct: 101 LDGRDLHGRVVKVNYAN 117
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 120/322 (37%), Gaps = 60/322 (18%)
Query: 268 RRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEE 327
R +++G L P +E + V G TA + N + + + F+E V
Sbjct: 80 RSLWIGDLQPWMDE----NYLMNVFGLTGEATAA--KVIRNKQNGYSEGYGFIEF--VNH 131
Query: 328 ASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGP 387
A+ L + GAP+ PS LN +G G +GP
Sbjct: 132 ATAERNLQ--TYNGAPM---------PSSEQAF-------RLNWAQLGA--GERRQAEGP 171
Query: 388 DR-IFVGGLPYYFTETQIRELLET-FGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIA 445
+ +FVG L T+ + E + + ++G +V DR TG SKGY F + D + A
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 446 CAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVV 505
+NG + + R AN ++P Q + + Q T
Sbjct: 232 MTEMNGQYCSSRPM---RTGPAAN-KKPLTMQPASYQNTQGNSGESD--------PTNTT 279
Query: 506 CLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVFLEYV 565
AV D DD++ +FG LV+V IP G F++Y
Sbjct: 280 IFVGAV---------DQSVTEDDLKSVFGQFGELVHVKIP---------AGKRCGFVQYA 321
Query: 566 DVDGATKARAGLNGRKFGGNQV 587
+ A +A + LNG + GG +
Sbjct: 322 NRACAEQALSVLNGTQLGGQSI 343
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 389 RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAA 448
RIFVGGL T+ + FG + ++ +R+TG S+G+ F + D D +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 449 LNGIKMGDKTLTVRRANQGANPQQPKPEQES 479
++G GD+ ++V R A P+ + + ES
Sbjct: 68 MHGRDFGDRVISVNR----AEPKLGRDDGES 94
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 355 SLAATLGPSQPNPNLNLGAVGLTPGSAGGLD-GPDR-IFVGGLPYYFTETQIRELLET-F 411
+L G P L + GS +D GPD IFVG L T+ ++E +
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHY 140
Query: 412 GPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQ 471
+RG +V D TG SKGY F + + + + A A +NG+ + + + A P+
Sbjct: 141 SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI----SAATPK 196
Query: 472 QPKPEQESILMHAQQQIALQKLMLQP--ALVA---TKVVCLTHAVSADELKEDEDYEEIL 526
+ Q+ + A + + + P A VA + V C T +S L ++ EE
Sbjct: 197 KNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTT--ISVANLDQNVTEEE-- 252
Query: 527 DDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQ 586
+++ S+ G ++ V IP G ++++ A +A + G+ G Q
Sbjct: 253 --LKKAFSQLGEVIYVKIPATK---------GYGYVQFKTRPSAEEAVQRMQGQVI-GQQ 300
Query: 587 VIAVFYSEN 595
+ + +S+N
Sbjct: 301 AVRISWSKN 309