Miyakogusa Predicted Gene

Lj3g3v1981160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1981160.1 tr|A4RTR8|A4RTR8_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,54.65,6e-19,RNA recognition motif,RNA recognition motif domain;
RRM,RNA recognition motif domain; SPLICING FACTO,TC76613.path1.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l...   149   3e-37
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l...   149   3e-37
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l...   149   4e-37
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l...   149   4e-37
AT1G60900.1 | Symbols:  | U2 snRNP auxilliary factor, large subu...   149   5e-37
AT2G33435.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   7e-08

>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
           large subunit, splicing factor | chr4:17294139-17297609
           REVERSE LENGTH=551
          Length = 551

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA +GGNTAGPGDAVVNV INH+  FAFVE
Sbjct: 211 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 270

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAM+LDGIIFEGAPVKVR
Sbjct: 271 MRSVEEASNAMSLDGIIFEGAPVKVR 296


>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
           large subunit, splicing factor | chr4:17294591-17297609
           REVERSE LENGTH=542
          Length = 542

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA +GGNTAGPGDAVVNV INH+  FAFVE
Sbjct: 233 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 292

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAM+LDGIIFEGAPVKVR
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVR 318


>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
           large subunit, splicing factor | chr4:17294139-17297609
           REVERSE LENGTH=573
          Length = 573

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA +GGNTAGPGDAVVNV INH+  FAFVE
Sbjct: 233 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 292

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAM+LDGIIFEGAPVKVR
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVR 318


>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
           large subunit, splicing factor | chr4:17294422-17297609
           REVERSE LENGTH=565
          Length = 565

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 77/86 (89%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  L PTANEQSVATFFSQVMA +GGNTAGPGDAVVNV INH+  FAFVE
Sbjct: 233 QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVE 292

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAM+LDGIIFEGAPVKVR
Sbjct: 293 MRSVEEASNAMSLDGIIFEGAPVKVR 318


>AT1G60900.1 | Symbols:  | U2 snRNP auxilliary factor, large
           subunit, splicing factor | chr1:22424008-22427806
           FORWARD LENGTH=589
          Length = 589

 Score =  149 bits (375), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 76/86 (88%)

Query: 29  HATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVE 88
            ATRHARRV V  LPPTANEQSV+TFFSQVM+ IGGNTAGPGDAVVNV INH+  FAFVE
Sbjct: 249 QATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 308

Query: 89  MRSVEEASNAMALDGIIFEGAPVKVR 114
           MRSVEEASNAMALDGII EG PVKVR
Sbjct: 309 MRSVEEASNAMALDGIILEGVPVKVR 334


>AT2G33435.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:14166037-14169492 FORWARD LENGTH=979
          Length = 979

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 51/85 (60%)

Query: 30  ATRHARRVNVEDLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVCINHDMNFAFVEM 89
           +TR  RR+  E++P +A+E+S+   F+  M + G N     +  ++  IN + + A VE 
Sbjct: 873 STRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVEF 932

Query: 90  RSVEEASNAMALDGIIFEGAPVKVR 114
            + ++AS A++LDG  F G+ +K+R
Sbjct: 933 LTPQDASAALSLDGCSFAGSNLKIR 957