Miyakogusa Predicted Gene

Lj3g3v1957990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1957990.1 Non Chatacterized Hit- tr|I1JZC3|I1JZC3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48587 PE,84.45,0,ATPase
domain of HSP90 chaperone/DNA topoisomerase II/histidine
kinase,ATPase-like, ATP-binding doma,CUFF.43439.1
         (728 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:58...  1075   0.0  
AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putat...   148   1e-35
AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | c...   101   2e-21

>AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 |
           chr4:5817107-5821035 REVERSE LENGTH=737
          Length = 737

 Score = 1075 bits (2780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/717 (72%), Positives = 612/717 (85%), Gaps = 5/717 (0%)

Query: 13  EPPKIQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSD 72
           EPPKIQRL ESVVNRIAAGEVIQRPVSAVKEL+ENSLDA S+SI++++KDGGLKLIQVSD
Sbjct: 25  EPPKIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSD 84

Query: 73  DGHGVRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGKL 132
           DGHG+R EDLPILCERHTTSKL+ FEDL S+ SMGFRGEALASMTYV HVTVTTITKG++
Sbjct: 85  DGHGIRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQI 144

Query: 133 HGYRVSYRDGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSSSDDYSKIVDLVSRF 192
           HGYRVSYRDGVMEHEPK CAAVKGTQIMVENLFYNM ARRKTLQ+S+DDY KIVDL+SR 
Sbjct: 145 HGYRVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYGKIVDLLSRM 204

Query: 193 AIHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASDNDPSTSCF 252
           AIH+ NV FSCRKHGAVKADVH+V + SRLD+IRSVYGVSVA+NL+++E S  D S   F
Sbjct: 205 AIHYNNVSFSCRKHGAVKADVHSVVSPSRLDSIRSVYGVSVAKNLMKVEVSSCDSSGCTF 264

Query: 253 EMHGYISNANHAAKKITMVLFINDRLVEWSALKRAVEIVYAATLPKASKPFIYISIVLPP 312
           +M G+ISN+N+ AKK  +VLFINDRLVE SALKRA+EIVYAATLPKASKPF+Y+SI LP 
Sbjct: 265 DMEGFISNSNYVAKKTILVLFINDRLVECSALKRAIEIVYAATLPKASKPFVYMSINLPR 324

Query: 313 ENIDVNVHPTKREVSVLNQEVIIEKIQSVVESTMRSSNEARTFQEQTAGQSSLSLINASK 372
           E++D+N+HPTK+EVS+LNQE+IIE IQS VE  +R++N+ RTFQEQ       +L +   
Sbjct: 325 EHVDINIHPTKKEVSLLNQEIIIEMIQSEVEVKLRNANDTRTFQEQKVEYIQSTLTSQKS 384

Query: 373 EVKHSPTPTGSRSQKVPVHKLVRTDSLDPAGRLHAYMQTMPDSNLEKNINLNAVRSSVRQ 432
           +   S  P+G ++QKVPV+K+VRTDS DPAGRLHA++Q  P S  +K  +L+ VRSSVRQ
Sbjct: 385 DSPVSQKPSGQKTQKVPVNKMVRTDSSDPAGRLHAFLQPKPQSLPDKVSSLSVVRSSVRQ 444

Query: 433 RRNPKDSTKLTSLDQLRDEINSNCDPGMMDIVRHCTYVGMADDIFALLQHNTHLYLANVV 492
           RRNPK++  L+S+ +L   ++S C PGM++ VR+CTYVGMADD+FAL+Q+NTHLYLANVV
Sbjct: 445 RRNPKETADLSSVQELIAGVDSCCHPGMLETVRNCTYVGMADDVFALVQYNTHLYLANVV 504

Query: 493 NLSKELMYQQVLSRFAHFNAIQLSDPVPLKDLIILALKEEDLDSECNDDDEFKEKIAEMN 552
           NLSKELMYQQ L RFAHFNAIQLSDP PL +LI+LALKEEDLD   +  D+ KE+IAEMN
Sbjct: 505 NLSKELMYQQTLRRFAHFNAIQLSDPAPLSELILLALKEEDLDPGNDTKDDLKERIAEMN 564

Query: 553 TELLKQKVEMLEEYFGIHIDEHGNISRLPVILDQYTPDMDRIPEFALSLGNDVDWEDEKN 612
           TELLK+K EMLEEYF +HID   N+SRLPVILDQYTPDMDR+PEF L LGNDV+WEDEK+
Sbjct: 565 TELLKEKAEMLEEYFSVHIDSSANLSRLPVILDQYTPDMDRVPEFLLCLGNDVEWEDEKS 624

Query: 613 CIQAVSAALGNFYAMHPPMLPNPSGEGLSFYKKRKLIDSCAEENTCDITGN-DVDDQVEH 671
           C Q VSAA+GNFYAMHPP+LPNPSG+G+ FY KR   +S  E++  D+ GN D++D ++ 
Sbjct: 625 CFQGVSAAIGNFYAMHPPLLPNPSGDGIQFYSKRG--ESSQEKS--DLEGNVDMEDNLDQ 680

Query: 672 ELLSEAETAWAQREWSIQHVLFPSMRLFFKPPVSMASNGTIVQVASLDKLYKIFERC 728
           +LLS+AE AWAQREWSIQHVLFPSMRLF KPP SMASNGT V+VASL+KLYKIFERC
Sbjct: 681 DLLSDAENAWAQREWSIQHVLFPSMRLFLKPPASMASNGTFVKVASLEKLYKIFERC 737


>AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putative
           | chr4:1076306-1080510 REVERSE LENGTH=923
          Length = 923

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 17  IQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSDDGHG 76
           I+ ++ +V++RI +G+VI    SAVKEL+ENSLDAG+TSI + ++D G    QV D+G G
Sbjct: 17  IRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCG 76

Query: 77  VRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGKLHGYR 136
           +   +  +L  +H TSKL  F DL ++ + GFRGEAL+S+  +G++TV T TK +     
Sbjct: 77  ISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVATL 136

Query: 137 VSY-RDGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSS-SDDYSKIVDLVSRFAI 194
           +++   G++  E K    + GT + V  LF N+  R K  + +   +Y K+V L++ +A+
Sbjct: 137 LTFDHSGLLTAEKKTARQI-GTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAYAL 195

Query: 195 HHTNVGFSCRKHGAVKADVHTVSTSSR---LDAIRSVYGVSVARNL--VEIEASDNDPST 249
               V F C            ++T  R    D I +V+G+S   +L  V I  S++    
Sbjct: 196 IAKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSICVSEDCRVE 255

Query: 250 SCFEMHGYISNANHAAKKITMVLFINDRLVEWSALKRAVEIVYAATLPKASKPFIYISIV 309
                 G  +  N A ++     FIN R V+   + + V  +Y  T  +   P   +  +
Sbjct: 256 GFLSKPGQGTGRNLADRQ---YFFINGRPVDMPKVSKLVNELYKDTSSR-KYPVTILDFI 311

Query: 310 LPPENIDVNVHPTKREVSVLNQEVIIEKIQSVVESTMRSSN--------EARTFQEQTAG 361
           +P    D+NV P KR+V   ++  +I  ++  +     SSN        E  + Q   AG
Sbjct: 312 VPGGACDLNVTPDKRKVFFSDETSVIGSLREGLNEIYSSSNASYIVNRFEENSEQPDKAG 371

Query: 362 QSSL 365
            SS 
Sbjct: 372 VSSF 375


>AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 |
           chr4:16865488-16871527 FORWARD LENGTH=1169
          Length = 1169

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 14/245 (5%)

Query: 17  IQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKL-IQVSDDGH 75
           I+ L E V + + +G ++      V+EL+ NSLDAG+T +++ +  G +   ++V DDG 
Sbjct: 4   IKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFV--GVVSCSVKVVDDGS 61

Query: 76  GVRFEDLPILCERHTTSKLSAFEDLQSI-KSMGFRGEALASMTYVGHVTVTTITKGKLHG 134
           GV  +DL +L ER+ TSK   F ++++  ++ GFRGEALAS++ +  + V T   G+ +G
Sbjct: 62  GVSRDDLVLLGERYATSKFHDFTNVETASETFGFRGEALASISDISLLEVRTKAIGRPNG 121

Query: 135 YRVSYRDGVMEH-----EPKPCAAVKGTQIMVENLFYNMAARRKTLQSSSDD-YSKIVDL 188
           YR   +     H     + K      GT + V +LFY+   RRK +QSS       I   
Sbjct: 122 YRKVMKGSKCLHLGIDDDRKD----SGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKC 177

Query: 189 VSRFAIHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASDNDPS 248
           V R A+ H+NV FS     + +    T  +SS    +    G     +L ++  +D   +
Sbjct: 178 VFRIALVHSNVSFSVLDIESDEELFQTNPSSSAFSLLMRDAGTEAVNSLCKVNVTDGMLN 237

Query: 249 TSCFE 253
            S FE
Sbjct: 238 VSGFE 242