Miyakogusa Predicted Gene

Lj3g3v1957980.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1957980.1 Non Chatacterized Hit- tr|A8Q603|A8Q603_BRUMA
Putative LAG1-interacting protein OS=Brugia malayi GN=,28.96,3e-19,no
description,Zinc finger, RING/FYVE/PHD-type; ZF_RING_1,Zinc finger,
RING-type, conserved site; SU,CUFF.43438.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72175.1 | Symbols:  | RING/U-box protein with domain of unkn...   235   1e-62
AT1G22510.1 | Symbols:  | RING/U-box protein with domain of unkn...   218   2e-57
AT1G22510.2 | Symbols:  | RING/U-box protein with domain of unkn...   169   8e-43
AT4G33940.1 | Symbols:  | RING/U-box superfamily protein | chr4:...   134   4e-32

>AT1G72175.1 | Symbols:  | RING/U-box protein with domain of unknown
           function (DUF 1232) | chr1:27157978-27159359 FORWARD
           LENGTH=185
          Length = 185

 Score =  235 bits (599), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 136/185 (73%), Gaps = 1/185 (0%)

Query: 4   EGPPLNDLCSVCHGNFHIPCQANCSHWFCANCIMLVWNHGSAIQPCKCPLCRRPITLLVP 63
             PP NDLCS+CH +F  PCQANCSHWFC NCIMLVW HGS +QPCKCPLCRR I+LLVP
Sbjct: 2   NSPPENDLCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCRRHISLLVP 61

Query: 64  TEQDSASHRQEPEVAHVLSQIQTYNRFFGARSSGPLQRMLDLPFLLRRLAREFLDPQRSL 123
           +E D+   R +  V  VL  ++TYNR FG RSS  +QRM DLPFLLRRL RE +DPQR+L
Sbjct: 62  SE-DTIRDRNDATVKEVLGNLETYNRLFGGRSSSLVQRMQDLPFLLRRLLREMMDPQRTL 120

Query: 124 PLVIRARVYIAMIISAIYVFSPIDIIPEGIWXXXXXXXXXXXXXXXXXHVAALYRSVLYR 183
           PLVIRARVYIAMI+SA+Y+ SPIDIIPEG+                  HVAALYRSVLY 
Sbjct: 121 PLVIRARVYIAMILSAVYIISPIDIIPEGVLGVVGLLDDLLIALICFLHVAALYRSVLYF 180

Query: 184 RHGGS 188
           RH GS
Sbjct: 181 RHAGS 185


>AT1G22510.1 | Symbols:  | RING/U-box protein with domain of unknown
           function (DUF 1232) | chr1:7951003-7952597 REVERSE
           LENGTH=185
          Length = 185

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 142/185 (76%), Gaps = 1/185 (0%)

Query: 4   EGPPLNDLCSVCHGNFHIPCQANCSHWFCANCIMLVWNHGSAIQPCKCPLCRRPITLLVP 63
             PP N+LCS+CHG+F+ PCQ+NCSHWFC NCIMLVW HGS ++PCKCPLCRRPI+LLVP
Sbjct: 2   NAPPENELCSICHGHFNAPCQSNCSHWFCGNCIMLVWRHGSTLRPCKCPLCRRPISLLVP 61

Query: 64  TEQDSASHRQEPEVAHVLSQIQTYNRFFGARSSGPLQRMLDLPFLLRRLAREFLDPQRSL 123
           +E+   S R +  V+ VL  ++TYNR FG +SSG +QRM DLPFLLRRL RE +DPQR+L
Sbjct: 62  SEETVRS-RNDATVSEVLHDVETYNRVFGGQSSGLIQRMQDLPFLLRRLLREMMDPQRTL 120

Query: 124 PLVIRARVYIAMIISAIYVFSPIDIIPEGIWXXXXXXXXXXXXXXXXXHVAALYRSVLYR 183
           PLVIRARVYIA+I+SAIY+ SPIDIIPEG+                  HVAALYRSVLY 
Sbjct: 121 PLVIRARVYIALILSAIYIISPIDIIPEGVLGVIGLLDDLLIALICFLHVAALYRSVLYS 180

Query: 184 RHGGS 188
           RHGGS
Sbjct: 181 RHGGS 185


>AT1G22510.2 | Symbols:  | RING/U-box protein with domain of unknown
           function (DUF 1232) | chr1:7951003-7952593 REVERSE
           LENGTH=203
          Length = 203

 Score =  169 bits (429), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 117/156 (75%), Gaps = 1/156 (0%)

Query: 33  ANCIMLVWNHGSAIQPCKCPLCRRPITLLVPTEQDSASHRQEPEVAHVLSQIQTYNRFFG 92
            NCIMLVW HGS ++PCKCPLCRRPI+LLVP+E+   S R +  V+ VL  ++TYNR FG
Sbjct: 49  GNCIMLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRS-RNDATVSEVLHDVETYNRVFG 107

Query: 93  ARSSGPLQRMLDLPFLLRRLAREFLDPQRSLPLVIRARVYIAMIISAIYVFSPIDIIPEG 152
            +SSG +QRM DLPFLLRRL RE +DPQR+LPLVIRARVYIA+I+SAIY+ SPIDIIPEG
Sbjct: 108 GQSSGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEG 167

Query: 153 IWXXXXXXXXXXXXXXXXXHVAALYRSVLYRRHGGS 188
           +                  HVAALYRSVLY RHGGS
Sbjct: 168 VLGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 203


>AT4G33940.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:16266085-16267612 FORWARD LENGTH=262
          Length = 262

 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 93/152 (61%), Gaps = 3/152 (1%)

Query: 1   MEREGPPLNDLCSVCHGNFHIPCQANCSHWFCANCIMLVWNHGSAIQPCKCPLCRRPITL 60
           +E E PP +D+C +C G+F +PC+ NC HW+C NCI+  WN+ +  +PCKCP+C R IT 
Sbjct: 63  IESESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITK 122

Query: 61  LVPTEQDSASHRQEPEVAHVLSQIQTYNRFFGARSSGPLQRMLDLPFLLRRLAREFLDPQ 120
           L P  + S   RQE EV  VL +++ YNR F    +G +Q++ +LPFL++R+    +D  
Sbjct: 123 LSP--EPSLQERQEQEVKEVLDKVRRYNRLFVGGLTGFVQKVHELPFLVKRMVWHMMDTD 180

Query: 121 RSLPLVIRARVYIAMIISAIYVFSPIDIIPEG 152
            +       R++ AM +S +Y  +  + IP G
Sbjct: 181 VNNLYFHEVRIF-AMFMSTLYTAAEFNFIPTG 211