Miyakogusa Predicted Gene

Lj3g3v1953400.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1953400.1 Non Chatacterized Hit- tr|G7IVD5|G7IVD5_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,91.49,3e-19,
,TC76463.path1.1
         (49 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10170.2 | Symbols:  | SNARE-like superfamily protein | chr4:...    64   2e-11
AT4G10170.1 | Symbols:  | SNARE-like superfamily protein | chr4:...    64   2e-11
AT1G33475.1 | Symbols:  | SNARE-like superfamily protein | chr1:...    62   6e-11

>AT4G10170.2 | Symbols:  | SNARE-like superfamily protein |
           chr4:6344587-6345351 FORWARD LENGTH=254
          Length = 254

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 32/44 (72%)

Query: 6   RSAPQNIRRKWWRQVRIVLAIDAAVCIILFVIWLVICRGISCIR 49
           RS  Q+   KW R V+IVLAIDAA+C+ LF IWL ICRGI C R
Sbjct: 210 RSVTQSFEWKWRRLVQIVLAIDAAICLTLFGIWLAICRGIECTR 253


>AT4G10170.1 | Symbols:  | SNARE-like superfamily protein |
           chr4:6344587-6345351 FORWARD LENGTH=254
          Length = 254

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 32/44 (72%)

Query: 6   RSAPQNIRRKWWRQVRIVLAIDAAVCIILFVIWLVICRGISCIR 49
           RS  Q+   KW R V+IVLAIDAA+C+ LF IWL ICRGI C R
Sbjct: 210 RSVTQSFEWKWRRLVQIVLAIDAAICLTLFGIWLAICRGIECTR 253


>AT1G33475.1 | Symbols:  | SNARE-like superfamily protein |
           chr1:12147423-12148190 REVERSE LENGTH=255
          Length = 255

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   RMRSA-PQNIRRKWWRQVRIVLAIDAAVCIILFVIWLVICRGISCIR 49
           R RS   Q+I RKW RQV+IVLAID A+C+ L  +WL IC GI C R
Sbjct: 208 RGRSGGSQSIERKWRRQVKIVLAIDIAICLTLLGVWLAICHGIECTR 254