Miyakogusa Predicted Gene
- Lj3g3v1953290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1953290.1 tr|G7J0G1|G7J0G1_MEDTR KH domain-containing
protein OS=Medicago truncatula GN=MTR_3g010220 PE=4
SV=1,84.01,0,RNA-BINDING PROTEIN RELATED,NULL; no description,NULL; K
homology RNA-binding domain,K Homology doma,CUFF.43344.1
(294 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prote... 409 e-115
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prote... 405 e-113
AT3G08620.1 | Symbols: | RNA-binding KH domain-containing prote... 273 1e-73
AT2G38610.2 | Symbols: | RNA-binding KH domain-containing prote... 271 5e-73
AT2G38610.1 | Symbols: | RNA-binding KH domain-containing prote... 271 5e-73
AT1G09660.1 | Symbols: | RNA-binding KH domain-containing prote... 263 1e-70
AT1G09660.2 | Symbols: | RNA-binding KH domain-containing prote... 216 2e-56
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 102 3e-22
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 102 3e-22
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 102 3e-22
>AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725462-22727932 FORWARD LENGTH=315
Length = 315
Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/256 (78%), Positives = 225/256 (87%), Gaps = 3/256 (1%)
Query: 38 EQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEHASPLAT 97
EQ+KYL+ELL ERH L PF+ VLPH +RL+NQEILRVTTLL NA+VL QS L+H SPLA+
Sbjct: 61 EQEKYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLAS 120
Query: 98 GGIFSNGGADVNGWASRFQSEMPSLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYP 157
GGIF N AD+NGWAS+F SE + SS P+WL+ GSSSGL+ K+T+RVDIPV+ YP
Sbjct: 121 GGIFQNARADMNGWASQFPSERS--VPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYP 178
Query: 158 NFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVL 217
NFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP KEEMMRGKPGYEHLNEPLH+L
Sbjct: 179 NFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHIL 238
Query: 218 VEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGS 277
VEAE P EI+DARLMQAREIL+DLL P++E+ D YKKQQLRELALLNGTLREEGSPMSGS
Sbjct: 239 VEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGS 298
Query: 278 VSPFHNSLGMKRAKTR 293
VSP+ NSLGMKRAKTR
Sbjct: 299 VSPY-NSLGMKRAKTR 313
>AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372885-13375793 REVERSE LENGTH=308
Length = 308
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/257 (77%), Positives = 225/257 (87%), Gaps = 5/257 (1%)
Query: 38 EQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEHASPLAT 97
EQ+KYL+ELL ERH L PF+ VLPH RL+NQEILRVTTLL NA L QSR +H SPLA+
Sbjct: 57 EQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENA--LSQSRFDHPSPLAS 114
Query: 98 GGIFSNGGADVNGWASRFQSEMPSLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYP 157
GGIF N AD+NGWAS+F SE + SS P+WL+ GSSSGL+VK+T+RVDIPV+ YP
Sbjct: 115 GGIFQNSRADMNGWASQFPSE--RSVSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYP 172
Query: 158 NFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVL 217
N+NFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP KE+MMRGKPGYEHLNEPLH+L
Sbjct: 173 NYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHIL 232
Query: 218 VEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGS 277
VEAE P EI+DARLMQAREIL+DLL PV+E+ D+YKKQQLRELALLNG+LREEGSPMSGS
Sbjct: 233 VEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGS 292
Query: 278 VSPFHNSLGMKRAKTRG 294
+SP+ NSLGMKRAKTRG
Sbjct: 293 ISPY-NSLGMKRAKTRG 308
>AT3G08620.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:2617925-2620314 FORWARD LENGTH=283
Length = 283
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/254 (56%), Positives = 175/254 (68%), Gaps = 4/254 (1%)
Query: 41 KYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEH--ASPLATG 98
+Y+++LL E LGPFM VLP C RL+NQEI R+T ++ N RL H SP+A+
Sbjct: 30 QYISQLLAEHQKLGPFMQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASP 89
Query: 99 GIFSNGGADVNGWASRFQSEMPSLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYPN 158
+ SN G + E A W S S VK+ +R+D+PV+ YPN
Sbjct: 90 NLMSNVSGGGLGGWNGLPPERIGGPHGMAM-EWQGAPASPSSYPVKRILRLDLPVDTYPN 148
Query: 159 FNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVLV 218
FNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP KEE ++GKPGYEHLNE LH+L+
Sbjct: 149 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILI 208
Query: 219 EAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGSV 278
EA+ P +I+D +L QA+EI+E+L+KPVDESQDY K+QQLRELALLN LRE SGSV
Sbjct: 209 EADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSV 268
Query: 279 SPFHNSLGMKRAKT 292
SPF NS MKR KT
Sbjct: 269 SPF-NSNAMKRPKT 281
>AT2G38610.2 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 181/265 (68%), Gaps = 18/265 (6%)
Query: 38 EQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEH--ASPL 95
+ +YLTELL E L PFM VLP C RL+NQE+ RV+ ++ N RL H SP+
Sbjct: 28 DSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPM 87
Query: 96 ATGGIFSN-GGADVNGWASRFQSEMPSLLQSSATP----SWLSPQGSSSGLVVKKTMRVD 150
A+ + SN + GW Q + S TP W GS S VK+ +R++
Sbjct: 88 ASSNLMSNVSNTGLGGWNGLSQERL------SGTPGMTMDWQGAPGSPSSYTVKRILRLE 141
Query: 151 IPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHL 210
IPV+ YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP KE+ +RG+PGYEHL
Sbjct: 142 IPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHL 201
Query: 211 NEPLHVLVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLN-GTLRE 269
NE LH+L+EA+ PA I++ RL QA+EI+E+LLKPVDESQD+ K+QQLRELALLN LRE
Sbjct: 202 NEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLRE 261
Query: 270 E--GSPMSGSVSPFHNSLGMKRAKT 292
E G GSVSPF++S KR KT
Sbjct: 262 ESPGPSGGGSVSPFNSS--GKRPKT 284
>AT2G38610.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 181/265 (68%), Gaps = 18/265 (6%)
Query: 38 EQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEH--ASPL 95
+ +YLTELL E L PFM VLP C RL+NQE+ RV+ ++ N RL H SP+
Sbjct: 28 DSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPM 87
Query: 96 ATGGIFSN-GGADVNGWASRFQSEMPSLLQSSATP----SWLSPQGSSSGLVVKKTMRVD 150
A+ + SN + GW Q + S TP W GS S VK+ +R++
Sbjct: 88 ASSNLMSNVSNTGLGGWNGLSQERL------SGTPGMTMDWQGAPGSPSSYTVKRILRLE 141
Query: 151 IPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHL 210
IPV+ YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP KE+ +RG+PGYEHL
Sbjct: 142 IPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHL 201
Query: 211 NEPLHVLVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLN-GTLRE 269
NE LH+L+EA+ PA I++ RL QA+EI+E+LLKPVDESQD+ K+QQLRELALLN LRE
Sbjct: 202 NEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLRE 261
Query: 270 E--GSPMSGSVSPFHNSLGMKRAKT 292
E G GSVSPF++S KR KT
Sbjct: 262 ESPGPSGGGSVSPFNSS--GKRPKT 284
>AT1G09660.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128032-3130791 REVERSE LENGTH=298
Length = 298
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/263 (53%), Positives = 183/263 (69%), Gaps = 15/263 (5%)
Query: 38 EQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEHASPLAT 97
++++YLTELL ER LGPF+ V+P+C RL+N EI RV+ S R EH SP +
Sbjct: 41 DRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS------SFPDLDRYEHGSPFRS 94
Query: 98 GGIFSNGGADVNGWASRFQSEMPSLLQSSAT---PS---WLSPQGSSSGLVVKKTMRVDI 151
G +NG D+ GW S Q+E LQ ++ PS W+ G + +VKK +R+D+
Sbjct: 95 LGQPTNGKLDLEGW-SMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDV 153
Query: 152 PVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLN 211
PV+ YP++NFVGR+LGPRGNSLKRVE +T CRV IRGRGS+KD KEE ++GKPGYEHL
Sbjct: 154 PVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLC 213
Query: 212 EPLHVLVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREEG 271
EPLHVL+EAE P +II++RL A LE LLKP+DES D+YK++QL+ELA LNGTLREE
Sbjct: 214 EPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREES 273
Query: 272 -SP-MSGSVSPFHNSLGMKRAKT 292
SP +S +SP + KRAKT
Sbjct: 274 PSPSLSPCLSPSMSPFNSKRAKT 296
>AT1G09660.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128205-3130791 REVERSE LENGTH=264
Length = 264
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/226 (51%), Positives = 152/226 (67%), Gaps = 15/226 (6%)
Query: 38 EQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEHASPLAT 97
++++YLTELL ER LGPF+ V+P+C RL+N EI RV+ S R EH SP +
Sbjct: 41 DRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS------SFPDLDRYEHGSPFRS 94
Query: 98 GGIFSNGGADVNGWASRFQSEMPSLLQSSAT---PS---WLSPQGSSSGLVVKKTMRVDI 151
G +NG D+ GW S Q+E LQ ++ PS W+ G + +VKK +R+D+
Sbjct: 95 LGQPTNGKLDLEGW-SMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDV 153
Query: 152 PVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLN 211
PV+ YP++NFVGR+LGPRGNSLKRVE +T CRV IRGRGS+KD KEE ++GKPGYEHL
Sbjct: 154 PVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLC 213
Query: 212 EPLHVLVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQL 257
EPLHVL+EAE P +II++RL A LE LLKP+ S Y+K +
Sbjct: 214 EPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMVHS--YHKSPNM 257
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 80/120 (66%), Gaps = 6/120 (5%)
Query: 151 IPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHL 210
IP++ +P +NF+G ++GPRGN+ KR+E T +++IRG+GS+K+ + + +
Sbjct: 247 IPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE-GRHQQKKDLKYDPSE 305
Query: 211 NEPLHVLVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREE 270
NE LHVLVEAE L A ++E LL+PVDE + +K+QQLRELA LNGT+R+E
Sbjct: 306 NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTIRDE 360
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 80/120 (66%), Gaps = 6/120 (5%)
Query: 151 IPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHL 210
IP++ +P +NF+G ++GPRGN+ KR+E T +++IRG+GS+K+ + + +
Sbjct: 247 IPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE-GRHQQKKDLKYDPSE 305
Query: 211 NEPLHVLVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREE 270
NE LHVLVEAE L A ++E LL+PVDE + +K+QQLRELA LNGT+R+E
Sbjct: 306 NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTIRDE 360
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 80/120 (66%), Gaps = 6/120 (5%)
Query: 151 IPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHL 210
IP++ +P +NF+G ++GPRGN+ KR+E T +++IRG+GS+K+ + + +
Sbjct: 247 IPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE-GRHQQKKDLKYDPSE 305
Query: 211 NEPLHVLVEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREE 270
NE LHVLVEAE L A ++E LL+PVDE + +K+QQLRELA LNGT+R+E
Sbjct: 306 NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGTIRDE 360