Miyakogusa Predicted Gene

Lj3g3v1933120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1933120.1 CUFF.43372.1
         (162 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55670.1 | Symbols: PSAG | photosystem I subunit G | chr1:208...   217   2e-57

>AT1G55670.1 | Symbols: PSAG | photosystem I subunit G |
           chr1:20802874-20803356 REVERSE LENGTH=160
          Length = 160

 Score =  217 bits (553), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 121/139 (87%), Gaps = 5/139 (3%)

Query: 28  PSNVTFQGLRPL----TRSKVSTLSTPNKRVSRGFVVKAELNTSLVISLSTGLSLFLGRF 83
           P++++F GLRPL    + S +  LST  ++ S   VV+AEL+ S+VISLSTGLSLFLGRF
Sbjct: 23  PNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSA-VVRAELSPSIVISLSTGLSLFLGRF 81

Query: 84  VFFNFQRENVAKQGLPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHI 143
           VFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHI
Sbjct: 82  VFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHI 141

Query: 144 VAYYILATASNGYDPSFFG 162
           VAYYILAT+SNGYDPSFFG
Sbjct: 142 VAYYILATSSNGYDPSFFG 160