Miyakogusa Predicted Gene

Lj3g3v1933050.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1933050.2 tr|A8HSE8|A8HSE8_CHLRE HMGB protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_187927 PE=4
SV=1,41.58,2e-17,FAMILY NOT NAMED,NULL; no description,ARID/BRIGHT
DNA-binding domain; no description,High mobility g,CUFF.43316.2
         (338 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein ...   284   8e-77
AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein ...   236   2e-62
AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein ...   221   6e-58
AT1G55650.1 | Symbols:  | HMG (high mobility group) box protein ...   217   1e-56
AT1G20910.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...    51   1e-06
AT2G17410.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...    50   3e-06
AT2G17410.2 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...    50   3e-06

>AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr3:4335721-4337804 REVERSE LENGTH=319
          Length = 319

 Score =  284 bits (726), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 154/308 (50%), Positives = 193/308 (62%), Gaps = 40/308 (12%)

Query: 38  ALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDR 97
           A Y DL R++ LFWE L++F        KVPT+GG  LDL+RLFIEVTSRGG+E+V+ DR
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 98  KWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSSTPDPGNRSLANSS 157
           KWKEVI AF F  TITSASF++R+YYL  L+  E VYY  K V    + D   +SLAN S
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEKPVSSLQSTDEALKSLANES 153

Query: 158 TPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAXXXXXXXXXXXXXXIDGKFDGGYI 217
               EG    D P QV      G  V G                      IDGKFD GY+
Sbjct: 154 PNPEEGI---DEP-QV------GYEVQG---------------------FIDGKFDSGYL 182

Query: 218 VTVSLGSEQVKGILYHVPDNVSQSSYAEGMPSS---------RKKSKSALRDPSLPKSNR 268
           VT+ LGS+++KG+LYH+P   SQS      PS+         RKKSK A+ D   PK +R
Sbjct: 183 VTMKLGSQELKGVLYHIPQTPSQSQQTMETPSAIVQSSQRRHRKKSKLAVVDTQKPKCHR 242

Query: 269 SGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKALRDKERYQTGMQ 328
           SGYNFFFAE YARL+P + GQE+ I+K+IG +WSNL+E+E+QVYQDK ++D ERY+  M 
Sbjct: 243 SGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEML 302

Query: 329 EYKSNHPA 336
           EYKS+H +
Sbjct: 303 EYKSSHES 310


>AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:1376106-1378264 REVERSE LENGTH=448
          Length = 448

 Score =  236 bits (602), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/325 (40%), Positives = 194/325 (59%), Gaps = 44/325 (13%)

Query: 36  PTALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLD 95
           P A Y+ +  D  LF  +L+  H   GTKF VP IGG+ LDL++LF+EVTSRGG+ K+L+
Sbjct: 21  PEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILN 80

Query: 96  DRKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRK--QVPPSSTPDPGNRS- 152
           +R+WKEV   F F  T T+AS+++R+YY SLL ++EQ+Y+FR   Q+PP S   P  R  
Sbjct: 81  ERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPC 140

Query: 153 -LANSSTPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAXXXXXXXXXXXXXXIDGK 211
            +  +  P +E  A+   P    P       + G++ G+                 IDGK
Sbjct: 141 FIQGAIRPSQELQALTFTP---QPKINTAEFLGGSLAGS------------NVVGVIDGK 185

Query: 212 FDGGYIVTVSLGSEQVKGILYH------------------VPDNVSQSSYAEGMP----- 248
           F+ GY+VTV++GSEQ+KG+LY                   +P+ ++ S+  +G+      
Sbjct: 186 FESGYLVTVTIGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTK 245

Query: 249 --SSRKKSKSALRDPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSE 306
               RKKS+   RDP  PK NRSGYNFFFAE +ARL+P   G++++IS+ IG LW+ L+E
Sbjct: 246 RRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNE 305

Query: 307 AERQVYQDKALRDKERYQTGMQEYK 331
            E+ +YQ KA+ DKERY+T M++Y+
Sbjct: 306 DEKLIYQGKAMEDKERYRTEMEDYR 330


>AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:28555287-28557465 REVERSE LENGTH=338
          Length = 338

 Score =  221 bits (563), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 129/314 (41%), Positives = 177/314 (56%), Gaps = 33/314 (10%)

Query: 33  YPPPTALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEK 92
           YP P AL++ + +D+++FW+ L+ FH    TKF +P IGGK LDL+ L++EVT RGG EK
Sbjct: 27  YPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEK 86

Query: 93  VLDDRKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSSTPDPGNRS 152
           V+ ++KW+EV   F+F  T TSASF++R++YL+LL+H+EQV+ F  + P      P    
Sbjct: 87  VVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGP---LLHPIATF 143

Query: 153 LANSSTPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAXXXXXXXXXXXXXXIDGKF 212
            AN ST  +E A V   P  +    T     P     +  A              I+GKF
Sbjct: 144 HANPSTS-KEMALVEYTPPSIRYHNTHP---PSQGSSSFTA-----------IGTIEGKF 188

Query: 213 DGGYIVTVSLGSEQVKGILYHVPDNVSQSS-----------YAE----GMPSSRKKSKSA 257
           D GY+V V LGSE + G+LYH       SS           Y E         +++    
Sbjct: 189 DCGYLVKVKLGSEILNGVLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKRRRSRR 248

Query: 258 LRDPSLPKSNRSGYNFFFAENYARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKAL 317
             DP+ PK NRSGYNFFFAE + +L+  +  +E+E +K IG  WSNLS  ER VYQD  L
Sbjct: 249 REDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGL 308

Query: 318 RDKERYQTGMQEYK 331
           +DKERYQ  + EY+
Sbjct: 309 KDKERYQRELNEYR 322


>AT1G55650.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:20796340-20798481 FORWARD LENGTH=337
          Length = 337

 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 177/297 (59%), Gaps = 41/297 (13%)

Query: 37  TALYQDLTRDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDD 96
           + LYQD+ R+  LFWE L+ FH+S   KFK+P +GGK LDL+RLF EVTSRGGLEKV+ D
Sbjct: 27  SMLYQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKD 86

Query: 97  RKWKEVILAFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSSTPDPGNRSLANS 156
           R+ KEVI AF F+ TIT+++F++R+ YL +L+ FE +YYF+    P ST     ++L   
Sbjct: 87  RRCKEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYFQ---APLSTFWEKEKAL--- 140

Query: 157 STPIREGAAVNDIPVQVSPAQTPGSVVPGTIDGNLNAXXXXXXXXXXXXXXIDGKFDGGY 216
              + E +A  D   + S    PG+V+ G                      IDGKF+ GY
Sbjct: 141 -KLLIEKSANRD---KDSQELKPGTVITGI---------------------IDGKFESGY 175

Query: 217 IVTVSLGSEQVKGILYHVPDNVSQSSYAEGMPSSRKKSKSALRDPSL-PKSNRSGYNFFF 275
           +++  +GSE++KG+LYH+     +          +KK+KS+  D    PK  R+GYNFF 
Sbjct: 176 LISTKVGSEKLKGMLYHISPETKR---------GKKKAKSSQGDSHKPPKRQRTGYNFFV 226

Query: 276 AENYARLRPSFQGQEKEISKRIGFLWSNLSEAERQVYQDKALRDKERYQTGMQEYKS 332
           AE   R++    GQ+    K  G +W+NLSE++R+VY +K+  D +RY+  + +Y+S
Sbjct: 227 AEQSVRIKAENAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRS 283


>AT1G20910.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr1:7277209-7280635 REVERSE LENGTH=398
          Length = 398

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%)

Query: 50  FWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVILAFKFR 109
           F   +++F+K    +FK P   G+PL++ +L+  V + GG E V  ++ W++V  +F   
Sbjct: 112 FLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPP 171

Query: 110 DTITSASFMVRRYYLSLLYHFEQV 133
            T T+ S+  R +Y   L  +E+ 
Sbjct: 172 KTCTTVSYTFRNFYEKALLEYEKC 195


>AT2G17410.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr2:7559869-7563474 FORWARD LENGTH=786
          Length = 786

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 45  RDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVIL 104
            D + F + L SF +     FK P   G+ L+  +L+  VT  GG +KV   + W++V  
Sbjct: 495 EDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGE 554

Query: 105 AFKFRDTITSASFMVRRYYLSLLYHFE--QVYYFRKQVP 141
           +F+   T T+ S+  R +Y   L  +E  +V     Q+P
Sbjct: 555 SFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIP 593


>AT2G17410.2 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr2:7559869-7563474 FORWARD LENGTH=780
          Length = 780

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 45  RDANLFWENLQSFHKSFGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVLDDRKWKEVIL 104
            D + F + L SF +     FK P   G+ L+  +L+  VT  GG +KV   + W++V  
Sbjct: 495 EDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGE 554

Query: 105 AFKFRDTITSASFMVRRYYLSLLYHFE--QVYYFRKQVP 141
           +F+   T T+ S+  R +Y   L  +E  +V     Q+P
Sbjct: 555 SFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIP 593